RNA id: NM_001124229.1


Basic Information

Item Value
RNA id NM_001124229.1
length 2497
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC100135837
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35776496 ~ 35793723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACGACGTTGTACAGCATCTCACTGATAATGTCTGGAATGGCGTCTAACCTAGCTAAAAAGCGGGCATTGGCTGCAGGGTTTGGCACTAATGCTAATGCGGTGAAATATCTCAATCAGGATTTTGAAGCGCTTAGGGCGCAATGTTTAAATCGAGGAGGGCTATTCTCGGATCCAACTTTCCCAGCCGCACCCGAATCTTTGGGCTTTAATGAACTCGGACCAGGCTCGTACAAAACTAGAGCAGTGCAATGGAAAAGGCCAGGAGAGTTGTGCTCAAGTCCAGAGTTCATTGTTGGAGGAGCCACCAGAACAGACATCTGTCAAGGAGCTCTAGGTGACTGTTGGCTTTTAGCTGCCATTGCCTCTTTGACACTCAATGAAGATGTCATGGCTAGAGTGGTCCCCGTTGGACAGAGCTTTGGGGAAAGTTACGCTGGCATTTTTCATTTTCAGTTTTGGCAGTTTGGGGAGTGGGTGGATGTTGTCATTGATGACAGGCTGCCCACAAAAGATGGAGAGCTGCTGTTTGTTCACTCAGCTGAGGGCTCAGAGTTCTGGAGTGCACTGCTGGAGAAGGCCTACGCCAAGGTGAATGGCTGCTACGAGGCCCTGTCTGGGGGCTCCACCACTGAGGGCTTTGAGGACTTCACTGGGGGCATTGCAGAGAACTACGACCTGAGGAAACCCCCTCCGAACATGTTCCAGATTATTAAGAAGGCAATTGAGTCAGGGGCTCTGCTTGGCTGCTCCATTGACATAACCAGCGCCGCTGATTCTGAGGCAGTCACACGACAGAAGCTGGTGAAAGGGCATGCCTACTCCCTAACAGGGGCAGTTGAGGTGACCTATCGTGGCCGTAAGGAGAAGCTGATCAGGATACGTAACCCTTGGGGTCAAGTGGAGTGGACAGGGGCTTGGAGTGACAGCTCCTCAGAGTGGAACTCCGTTGATGATTCAGAGCGCCAGAACGTCAAAGCTGATGATGGAGAATTCTGGATGTCATTTACAGAGTTCCTGCGGCATTACTCTCGCATAGAGATTTGCACTCTGACCCCAGATACACTAACGGATGACTCTGTGAAGCACTGGAGTGTGTGTAACTATGATGGTAGCTGGAGGAAGGGTTCTACTGCTGGGGGGTGCAGGAACCACGCCTACACCTTCTGGATGAACCCCCAGTTTGTGATCAGGCTGGATGAGGAGGACGATGACCCTGATGATAACGAGGTGGGCTGCAGCTTCGTGGTGGGCCTGATCCAGAAGAACCGGCGCCGGCTGAGGAAAGTAGGCGAAGACATGCACACCATTGGCTTCGCCATCTATGAGGTTCCATCACAGTTTCATGGTCAGAGGGAGGTTCACCTGGACAAGAATTATTTCCTGACACATGCTCAAAAGGCCCGGTCTGAGACCTTCGTCAACCTTCGGGAGGTTAGCACCCGCTTCAAAATGCCCCCCGGGGAGTACCTCATTGTGCCCTCCACCTTCGAGCCGCACCTAAATGGTGACTTCTGCATCCGTGTTTTCTCAGAGAAGCAGACTGAGACTCGACCATGTGACGATCCTGTCAAGGCAGACTTAGATGATgaGACTGTATCTGATGCTGAAGTCGACGCAGGATTTAGAGGCTTGTTTACAAAGCTTGCAGGAGATGACATGGAGATCTCTGCAGCAGAGCTGAAAACCATCATGAATAAGATTGTCTCCAAACGAACTGACATCAAAACAGATGGCTTCAGTCTTGAAACCTGTAGAATCATGGTCAACCTCATGGATgACAGTGGGAATGGAAAATTGGGCCTTGGGGAATTCGCTACTCTGTGGAAGAAAGTGCAGAAATACCTGGGTATCTATAAGAAGAATGACATGGACAATTCAGGCACCATGAGTACTCCAGAGATGCGTATGGCCCTGAAAGAAGCAGGCTTCACTTTGAACAATGGCATTTATCAGATCCTCGTGGCTCGCTACGCTGAGCCAGACATGACCATCGACTTTGATAACTTTGTGGCCTGCCTTATGCGTCTGGATATGATGTTCAGAGTCTTTATGAAGATTGATGCTCATGACAGTGGCTCCATTGAGCTCGACTTCCATCAGTGGCTAACATTTACGATGATCTAGAAGACCCCTGTTCATTCCGAAGAAAAATGTGCAAGTTAAAAAAACAAGTATTAAATTCATTATTTAATGGAATTTTTTAGATTTTTATGTCACATTTTTGTATGTATTTTATTCACTGCTGCATGATATTGTGTATTCGGTTAGACATTACTAGCTGTGGTATGGTATTACTGTGGTAGATTTCATGTGAATGTCATTCTGTAAGAGGAACAAGGATATATTTGTTCGCAAACCACTGCAATCTGTTTACTTTTTGTATTAGAAAATATGCCTTGTAGAGATTGTGAAATTGCTTTTTATTTTGGCCTGTTTTATGGAATGTCCACATGGAATTCCATGCAATGCTCAAATAAAGATTTCTTATATTCTAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K03853 CAPN2; calpain-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1652059 lncRNA upstream 137052 35638494 ~ 35639444 (+) True G1443197
TU1652060 lncRNA upstream 139765 35633485 ~ 35636731 (+) True G1443198
TU1652049 lncRNA upstream 154041 35622015 ~ 35622455 (+) True G1443187
TU1652045 lncRNA upstream 160344 35615413 ~ 35616152 (+) True G1443183
TU1651950 lncRNA upstream 256214 35519618 ~ 35520282 (+) True G1443097
TU1652126 lncRNA downstream 163843 35957566 ~ 35957888 (+) True G1443247
TU1652226 lncRNA downstream 164532 35958255 ~ 35958545 (+) True G1443346
TU1652227 lncRNA downstream 164886 35958609 ~ 35958813 (+) True G1443347
TU1652229 lncRNA downstream 168488 35962211 ~ 35962441 (+) True G1443349
TU1652232 lncRNA downstream 175867 35969590 ~ 35969957 (+) True G1443352
XM_021568318.2 mRNA upstream 34901 35716802 ~ 35741595 (+) False aars2
XM_021568320.2 mRNA upstream 34901 35716802 ~ 35741595 (+) True aars2
XR_005036967.1 mRNA upstream 48738 35716802 ~ 35727758 (+) False aars2
XM_021568317.2 mRNA upstream 67979 35689794 ~ 35708517 (+) True cfap58
XM_021568316.2 mRNA upstream 99232 35655475 ~ 35677264 (+) False bdh2
XM_021568323.2 mRNA downstream 622 35794345 ~ 35824095 (+) False LOC110493821
XM_036949800.1 mRNA downstream 622 35794345 ~ 35824095 (+) False LOC110493821
XM_036949801.1 mRNA downstream 622 35794345 ~ 35824095 (+) False LOC110493821
XM_021568322.2 mRNA downstream 624 35794347 ~ 35824095 (+) True LOC110493821
XM_021568324.2 mRNA downstream 31810 35825533 ~ 35832374 (+) False LOC110493822
TU1652130 other upstream 24706 35746872 ~ 35751790 (+) True G1443251
TU1652084 other upstream 31854 35673964 ~ 35744642 (+) True G1443221
TU1651374 other upstream 591956 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other upstream 591956 35168898 ~ 35184540 (+) True LOC110493802
TU1650494 other upstream 1473887 34301487 ~ 34302609 (+) False LOC110493778
TU1652322 other downstream 445221 36238944 ~ 36240725 (+) False LOC118940407
TU1652778 other downstream 537512 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 698654 36492377 ~ 36529730 (+) False LOC110493174
TU1652965 other downstream 749296 36543019 ~ 36557771 (+) True LOC110493174
TU1653174 other downstream 1063843 36857566 ~ 36861009 (+) True G1444198

Expression Profile