RNA id: XM_036949800.1


Basic Information

Item Value
RNA id XM_036949800.1
length 3213
RNA type mRNA
GC content 0.49
exon number 23
gene id LOC110493821
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35794345 ~ 35824095 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatgaaccaACTTCGCCGTGGGCTTTGAACGGGACTCCTGGCTCACGCCCGGGAGGCAGTCCTGTTCCAAATCGAATGCAATCCACTTTTAGCCGTCGCAAAACACGCCTGTCCGGGCGGGATTAATCGAACCCCCTCATTTTGATGCTGCTAAACCCCTCCCACCGGAATGGGCTGGGCAAGACACTGCAGTAACAACACTGATTGCATCTTTGTTCTGGCCTTCACTCATATGACATGATAGATATATTTACACATATCGGTTAACAGAGACACTGAACGTCACCTCGGAAAGTGTCTAAAAAGATTCCGGCCTGCTGCCTCCCACACTGAAGGACTGAAGCATGTACCCATTCGGAGGGGTCTCTGCGCGCATCCAGAGGGAGAGACTACACGCCGAGGGAATGGGAACCAACGAGCGGGCGCTGAAGTTCCTCAACCAGGACTACGAGGCCTTGAAGCAGGAGTGCCTGGAGAGCGGCTGCCTGTTCGAGGACTCCTGCTTCCCCCCCGAGCCACCCTCCCTGGGCTTCAAAGAGCTGGCCCCCCACTCATCCAAAACCCAGGGCGTGGAGTGGATGAGGCCCACAGAGTTTTCAGATAACCCTGAGTTCATTTTGGGCGGTGCCACAAGGACTGATATCTGTCAAGGAGCACTGGGTGACTGCTGGCTCCTGGCAGCCATTGCTTCCCTCACCCTTAATGAGAAGCTGCTACACAGGGTGGTCCCTCATGGTCAATCCTTCCAAGACAACTACGCTGGCATCTTCCACTTCCAGTTCTGGCAGTTTGGAGAGTGGGTGGATGTTGTCATTGATGATCGACTGCCTGTCAAAGATGGCGAGCTCATGTTTGTTCACTCTGCTGAGGGTAACGAGTTCTGGAGTGCTCTGATTGAGAAGGCTTATGCCAAACTGAGTGGCTCCTATGAGGCCTTGTCTGGTGGCAGCACCACAGAGGGCTTTGAGGACTTCACCGGTGGCGTGGCAGAGTTTTACGAGCTACGTAAGGCACCTAAGGATCTGTACCGGATCATCGGTAAAGCCCTGGAGAGAGGCTCCCTTCTGGGCTGCTCCATTGACATCACCAGTGCCTTCGACATGGAGGCAGTGACCTTTAAGAAGCTGGTTAAAGGCCATGCCTACTCTGTCACAGGTCTgaagcagGTGGATTTCCGGGGTCGCATGGAGAGGTTGATCCGTATTCGTAACCCCTGGGGTCAGGTGGAGTGGACCGGGGCTTGGAGTGATAATTCGTCTGAGTGGAATGCGATTGatccaacagagagggaggacATGAATTGTCACATGGAGGATGGGGAGTTCTGGATGCCCTTCCAGGAGTTCCTGCGCCAGTTTTCCCGGCTGGAGAtctgtaacctgacagcagatgCTCTGAGTGATGACAGCCAGAGTTTCTGGAACACCATCAAGTTTGACGGAGGCTGGAGGAAGGGCAGCACGGCTGGAGGTTGCCGGAACCACCCAAACACCTTTTGGATCAACCCTCAGTATAAGATTACCCTGCTGGAGGAGGACGACGACcctgaggatgaagaggaggccTGCAGCTTCTTGGTGGCTCTCATGCAGAAGGATAGGCGCCGCTACCGACGCCAGGGGCAGGACATGCACACCATTGGCTTTGCCATCTACGAGATTCCAGAAGAGTTTAAGGGTTGTCAAAGTGTTCATTTGAAGAAAGACTTCTTCTTGAAGCACTCATCATGTGCACGTTCTGAGACCTTTATCAACCTGAGGGAGGTGAGCGCACGGCTGCGCCTGCCACCCGGGGAGTACCTGGTGGTACCCTCCACCTTCGAACCTGGGAAAGAGGCTGACTTTGTCCTCAGAGTCTTCACTGAGAAGCAGTCGGAGACACAAGAACTGGATGATGATGTGGTGGCAAACTTTGAAGATGAGGAGGACATCTCAGAGAGTGACATTGAGGACTCATTCAGGGCCATGTTCGCTCAGTTATCTGGGGagGACATGGAGATCTCTGTCCGTGAGCTCAGGACCATTCTCAATAGGGTGGTGACCAAACACAGGGACCTGAAGACTGATGGGTTCAGCATGGAGTCCTGTAGAGGCATGGTCAGCCTATTAGACAAAGATGGCAGCGCTCGCCTTGGTATAGTTGAGTTTCAGATTCTGTGGAATAAGATCAGGAAGTGGCTGGGAATCTTCCGCCAGTTTGATCTGGACAAGTCTGGATGTATGAGCTCCTATGAGATGCGTCTGGCCTTGGAGTCTGCTGGATTCAAACTGAACAACAGGCTGAACCAGGTGCTTGTGGCCAGATACGCTGAAAACGAGGTCATCGACTTTGATAACTTTGTCTGCTGTCTGGTCAAGCTAGAAGCCATGTTCAAGGCCTTCCAGACGTTGGATAGAGAAGGCGCTGGAACTGCTGAAATGAATGTCACAGAGTGGCTGTATATGACCATGTGTGGTTGAAGTGTATGGTGATCTAGTATCCTGTAGAAGAGGACAACCATAGCCTCAAAGAGTCTCCAAAGCATCTCAGTGCACCCAACTAAGGCTTGCATCATCTCAAACAATCCCAAAGAAAATGCTACTCCCTGCATTTTAATAACCACCACAAATACTTTGCTGCCTCTGCTCAATAACTTGGCAATTGCATTTAACCTGGTCAATTACACGTGATGAAAATGAAATGCTCTACTAAGGGAGTCGCTGCATATAAATCACTGCACGCATTATACAATGGCAAAGTTTTCAGGGCATACCGCTATgcaaaaaatacatgtatttttaaaGTTCCATTTCAAACCTCTTAGGTTTTCCTCTCTTTTGTTTAACCATCAAATTCAGATGTTAGTCTGTCATAAGAGATGATGACATCGTACTCTGACATTATGTATTTTTTGCTACCTTTCACAGGATCTTGGATTCTAGAAAGTATGTATTGCTTTAGGCTGTTAATAAACTGCAAATTGTACTGATGCCTTCGTCTTTAGGATACCTCAGTACAGTAAACTACATCAGTTAAAGACAGAAATATAACTAATCTTTTTCTCAAGATGGCAATTTTAGTCTAAAAATTGGTGAGGGTACTTTCAATTAAAACACTAAATGTAGGAAAGGGATTCCTCAATGTGACAAGGTAAAAAGTAACTTCGATGCATATGCTGAACTGCACATTTTAATTCTACGAATGTCACTGAATAAAAACTGACTGATCATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1652059 lncRNA upstream 154901 35638494 ~ 35639444 (+) True G1443197
TU1652060 lncRNA upstream 157614 35633485 ~ 35636731 (+) True G1443198
TU1652049 lncRNA upstream 171890 35622015 ~ 35622455 (+) True G1443187
TU1652045 lncRNA upstream 178193 35615413 ~ 35616152 (+) True G1443183
TU1651950 lncRNA upstream 274063 35519618 ~ 35520282 (+) True G1443097
TU1652126 lncRNA downstream 133471 35957566 ~ 35957888 (+) True G1443247
TU1652226 lncRNA downstream 134160 35958255 ~ 35958545 (+) True G1443346
TU1652227 lncRNA downstream 134514 35958609 ~ 35958813 (+) True G1443347
TU1652229 lncRNA downstream 138116 35962211 ~ 35962441 (+) True G1443349
TU1652232 lncRNA downstream 145495 35969590 ~ 35969957 (+) True G1443352
NM_001124229.1 mRNA upstream 622 35776496 ~ 35793723 (+) True LOC100135837
XM_021568318.2 mRNA upstream 52750 35716802 ~ 35741595 (+) False aars2
XM_021568320.2 mRNA upstream 52750 35716802 ~ 35741595 (+) True aars2
XR_005036967.1 mRNA upstream 66587 35716802 ~ 35727758 (+) False aars2
XM_021568317.2 mRNA upstream 85828 35689794 ~ 35708517 (+) True cfap58
XM_021568324.2 mRNA downstream 1438 35825533 ~ 35832374 (+) False LOC110493822
XM_021568325.2 mRNA downstream 1438 35825533 ~ 35847460 (+) True LOC110493822
XM_021568326.2 mRNA downstream 14064 35838159 ~ 35847457 (+) True LOC110493823
XM_021568328.2 mRNA downstream 31015 35855110 ~ 35955647 (+) False LOC110493827
XM_021568329.2 mRNA downstream 31015 35855110 ~ 35955647 (+) False LOC110493827
TU1652130 other upstream 42555 35746872 ~ 35751790 (+) True G1443251
TU1652084 other upstream 49703 35673964 ~ 35744642 (+) True G1443221
TU1651374 other upstream 609805 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other upstream 609805 35168898 ~ 35184540 (+) True LOC110493802
TU1650494 other upstream 1491736 34301487 ~ 34302609 (+) False LOC110493778
TU1652322 other downstream 414849 36238944 ~ 36240725 (+) False LOC118940407
TU1652778 other downstream 507140 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 668282 36492377 ~ 36529730 (+) False LOC110493174
TU1652965 other downstream 718924 36543019 ~ 36557771 (+) True LOC110493174
TU1653174 other downstream 1033471 36857566 ~ 36861009 (+) True G1444198

Expression Profile