RNA id: XM_021568326.2


Basic Information

Item Value
RNA id XM_021568326.2
length 2096
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110493823
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35838159 ~ 35847457 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGTAAATATCCGGTAGTAACTCGACAAAGTATCCTTACATTTCTGTTCTCTCTTTGGCAACATCATGGAGTTGTTTCTTTCTGGTCCACTTCTTCATTTTTGCAACGCTTCTTTTCCTACTGGAGCATCTGTTCGTGATCTAGTTGATATTTTTACGGAAGAAAAGGGAATCCCGTCATCGGATCTCTATGTCAAGAATAATGGACGACTATCAGAGCTTGATGAGAAATTGCAGGCTGGAGCGGTGTATCGACTGGAGCCTCGTCTCTGTGGAGGGAAAGGAGGCTTTGGGTCTATGCTTAGGGCTCTTGGGGCACAAATTGAGAAGACCACAAACCGCGAAGCCTGCAGAGACCTAAGCGGAAGGAGACTAAGAGATGTCAACCATGAGAAAGAgaTGGCAGAGTGGCTTAAGAAGCAGGCAGAACGCGAGGCAGAGAAAGAGCAAAGGCGTCTGGAGAGACTGCAGAGGAAGCTGGCCGAGCCCAAGCATCACTTTACAGACCCGGAGTACGAGAAGCAGTGCCACGATCTCTCAGAACGCCTGGAGGACTCCGTTTTAAAAGGAATGCAAGCCTCTTCCAGCGGACTAGTGAAAGTAGACGAGGCACCGAAACGCAAAAAGTCACCTCCAAACAAAGGTCAAGGGAAAATCAAGAAGAAATGCTTTTGGACAGGTGTTGGTGGCCTGGATGACCTCGACAGCTCTGAGGATGACGATGATTCAAGCGACAGCGGGAACTCTCCCTCCACATCTGCTTCCGGTTCAGGGGTACCCGATTGTCCCGTAACGGGAGCAACGTCAGCTCACACATCAGCCTCTCAGAGCAGAGCGGAACAAACGGCAACTCCGGAAGCTCCTAGGGCAAGCAGCAGCTCCATCTCAGGACCCAGCTCTCCAGAGAGCCCAGTCGAGGTGCAGACACAATCTCAAGCAGAGGCAGCAGCTTTTGCTACCAGTGGTAGTGGGGAGCAGAAGGAGGTGGTCCCCACAGAAGAAACATTCCCAAAGACCGACAATctaagcgcagctcagagtagcGTCAACCAAGCCGCTTGTGAAGATGGGCCCTTAGACCTCCAGGCAGTGCACTCAGACAAGGAGTTGGAGACTTTGGGGTTGGACAGGCTAAAGGCGGAACTGATTGCACGGGGGATGAAGTGTGGGGGAACCCTGTCTGAGCGCGCTGCTCGCCTTTTCTCCACCGTAGGGCTTTCTGCAGAGGACATCGATCCTGCCCTATTGGCCAAACCCAGCAAGAAGCAATGACTGCCTAGTGCCTATTACAGCACCGTATAATAATGAGTCTTATGCTAAGTGTACTCCTGATAAATCTGTTGCCTTATAATTGTCACCAAGTTAACTATGCCATGTGCCCCAGATTCAAAGTGTCTGATTATTTTTGTTTTCCCCAAATAGTGGACACATTTAAACTATTTAACAGCTATTGGATATATCCCAGAATTCTCCTGTTCTCAATGCATTTCTGACATTTTTTCTAGAGTAGATTTTACTTTTTGAAATTCTTAAGTCAGTGTACTGTCCCTCATGTTAGATGAAATGTCAAATTAAATTAAGTTTCTCTTTATCACAGTAGCTAGGTTTttatccaattggtgacagattttcatgcaaatattctaaaacgaATCGCGCATTTTCCAACTAGAGATGTTaccatcacgtgactccaagttcaCTTTGCTATGTTGGTTATTataatcaacattttaaagtaTGAAGGTCtttccactgccatttctcaTGTAATTAATTTTCCAGAAACACAAAGTTCCCACCTTGTCTAGCCTTTtgtgttttgttgacatttggaaagtttaccgactcttatttgctgtttccatcaggactgttgtaaaaaaatgtttttatccaACGTACTTTACTCAGGTAAAAAGGTTGGATGGCAACCTGGTTAGTGAGTGGTTGTTCTCACAACCAATATCCTTTTAGGACAGTAATTCTTTGCCTTAAAAATTAGGTTCCTAACACTGGAAATGgggtttcttgttttttttgtggTCTTATGTTCCTTATTTGGATATATGATTGAATAAAAGGCCTTTCTCAAA

Function

GO: NA

KEGG:

id description
K25059 SDE2; replication stress response regulator SDE2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1652059 lncRNA upstream 198715 35638494 ~ 35639444 (+) True G1443197
TU1652060 lncRNA upstream 201428 35633485 ~ 35636731 (+) True G1443198
TU1652049 lncRNA upstream 215704 35622015 ~ 35622455 (+) True G1443187
TU1652045 lncRNA upstream 222007 35615413 ~ 35616152 (+) True G1443183
TU1651950 lncRNA upstream 317877 35519618 ~ 35520282 (+) True G1443097
TU1652126 lncRNA downstream 110109 35957566 ~ 35957888 (+) True G1443247
TU1652226 lncRNA downstream 110798 35958255 ~ 35958545 (+) True G1443346
TU1652227 lncRNA downstream 111152 35958609 ~ 35958813 (+) True G1443347
TU1652229 lncRNA downstream 114754 35962211 ~ 35962441 (+) True G1443349
TU1652232 lncRNA downstream 122133 35969590 ~ 35969957 (+) True G1443352
XM_021568324.2 mRNA upstream 5785 35825533 ~ 35832374 (+) False LOC110493822
XM_021568323.2 mRNA upstream 14064 35794345 ~ 35824095 (+) False LOC110493821
XM_036949800.1 mRNA upstream 14064 35794345 ~ 35824095 (+) False LOC110493821
XM_036949801.1 mRNA upstream 14064 35794345 ~ 35824095 (+) False LOC110493821
XM_021568322.2 mRNA upstream 14064 35794347 ~ 35824095 (+) True LOC110493821
XM_021568328.2 mRNA downstream 7653 35855110 ~ 35955647 (+) False LOC110493827
XM_021568329.2 mRNA downstream 7653 35855110 ~ 35955647 (+) False LOC110493827
XM_021568331.2 mRNA downstream 7653 35855110 ~ 35955647 (+) False LOC110493827
XM_036949803.1 mRNA downstream 7673 35855130 ~ 35955647 (+) True LOC110493827
XM_036949824.1 mRNA downstream 386835 36234292 ~ 36242517 (+) False LOC118940407
TU1652130 other upstream 86369 35746872 ~ 35751790 (+) True G1443251
TU1652084 other upstream 93517 35673964 ~ 35744642 (+) True G1443221
TU1651374 other upstream 653619 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other upstream 653619 35168898 ~ 35184540 (+) True LOC110493802
TU1650494 other upstream 1535550 34301487 ~ 34302609 (+) False LOC110493778
TU1652322 other downstream 391487 36238944 ~ 36240725 (+) False LOC118940407
TU1652778 other downstream 483778 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 644920 36492377 ~ 36529730 (+) False LOC110493174
TU1652965 other downstream 695562 36543019 ~ 36557771 (+) True LOC110493174
TU1653174 other downstream 1010109 36857566 ~ 36861009 (+) True G1444198

Expression Profile