RNA id: TCONS_00046224



Basic Information


Item Value
RNA id TCONS_00046224
length 2966
RNA type mRNA
GC content 0.47
exon number 22
gene id XLOC_023379
representative False

Chromosome Information


Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17364745 ~ 17400472 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AGTCATCTccagtcaaacacacacagactgagCGCAGGGCCTCGACCTCACACTGCTCGAcgttacaaacacacacagATATTGCACTGAACTGTTTGGACGCCTCTGTAACCCTAGATCAGCCTGCGCCACCATCTGTGAAGTGTAGAGGTACTCTTCCCTGAACCCTTCCTGTCTGAATGCTCTCCAGCATGGTGGACTACATGTGAAGCAGCAGTGTTCTGGAGCAGAACGGGAAGAAGAGAGGATTTATCTGACGCGAGCAGACCGCCACAGAGACAATGTCATCCACCAGGGGCCAGAACACCCACGGGCTCAAACAGATTGGGCTGGAGCAGATCTGGGATGACCTGAGATCAGGAATACAGCAAGTCTATACACGCCAGAGCATGGCTAGGTCTCGCTACATGGAACTCTACACACATGTGTATAACTACTGTACCAGTGTACACCAGGCCAGGCCTACTGGCATCCCCTCGTCCAAACCCTCCAAGAAAACACCCACACCTGGGGGGGCACAGTTTGTTGGACTAGAACTCTACAAAAGACTCAAAGATTTTCTGAGGAGCTACTTGACAAACCTTCTCAAGGATGGAGAGGACCTGATGGATGAGAGCGTGCTAAAGTTCTACACACAGCAGTGGGAGGACTATCGCTTCTCCAGTAAAGTGTTAGATGGGATCTGTGCTTACCTCAACAGACACTGGGTGCGTCGGGAGTGTGATGAGGGACGGAAAGGAATTTATGAAATCTACTCGCTTGCTTTGGTCACTTGGAGAGAATGTTTATTCAGACCTCTAAACAAGCAGGTAACAAATGCAGTTTTAAAGCTTGTTGAGAAGGAGAGAAATGGTGAGACTATTAACACCAGACTCGTCAGTGGAGTTGTTCAGTCCTATGTTGAGTTGGGCTTGAATGAGGACGATGCATTTGTGAAGGGCCCGACATTATCAGTTTACAAGGAGTACTTCGAGGCCCAGTTTTTAGCAGACACCGAACGTTTCTATACACGAGAAAGCACAGAGTTCCTCCAACAAAACCCTGTTACAGAATACATGAAAAAGgCAGAGGCACGATTGCTGGAGGAGCAGCGGCGGGTTCAGGTTTATCTCCACGAGAGCACACAAGACGAGCTGGCTCGCAAGTGTGAGCAGGTCCTCATCGAGAAACACCTGGAGATCTTCCACACAGAGTTCCAGAATCTTCTAGATGCTGATAAGAATGAAGATCTCGGTCGGATGTACAACCTTGTTTCCCGAATCACAGATGGATTGGGAGAGCTAAAGAAACTCTTGGAGTCCCACATTCATAATCAGGGTCTGGCAGCCATCGAGAAGTGTGGAGATTCAGCGCTCAATGATCCTAAAATGTATGTGCAAACTACCTTGGATGTTCACAAGAAATACAATGCTCTTGTCATGTCTGCGTTCAATAATGATGCCGGGTTCGTGGCGGCACTGGATAAGGTTGCCTGTGGAagattcattaataataatgcaGTAACAAGAATGGCACAGTCCTCCAGCAAATCCCCTGAGCTTCTGGCCAGATACTGTGACTCCTTACTGAAGAAGAGTTCAAAGAACCCAGAGGAGGCTGAACTTGAAGATACTCTCAACCAAGTGATGGTGGTTTTCAAGTATATCGAGGATAAAGACGTGTTCCAGAAGTTCTACGCCAAGATGCTGGCCAAAAGACTGGTGCACCAGAACAGTGCCAGCGACGACGCCGAGGCCAGCATGATCTCCAAACTCAAGCAAGCGTGTGGGTTCGAGTACACCTCCAAACTCCAGCGCATGTTCCAGGACATCGGCGTCAGTAAAGACTTGAACGAACAATTCAAAAAGCACCTTTCCAACTCTGAGCCTCTGGACTTGGATTTCAGCATCCAGGTTTTGAGCTCCGGCTCGTGGCCGTTCCAGCAGTCTTGCACATTCGCTTTACCATCTGAGTTGGAGCGCAGTTACCAAAGATTTACAGCTTTTTATGGAAGCAGACACAGCGGACGCAAGTTAACATGGCTTTACCATCTATCCAAAGGAGAGCTGGTCACCAACTGCTTCAAGAACAGATACACTCTGCAGGCCTCCACCTTCCAGATGGCCATCCTGCTGCAGTTCAACACCGAGAACTGCTACTCCGTCCAGCAGCTCGCCGACAGCACACAGATCAAAACCGATATTTTAGTTCAGGTCTTGCAAATCCTGTTGAAATCAAAGTTGCTAGTCTTGGAGGACGAGAATGCAAACATTGACGAAATGGATTTCAAGCCTGATACATTAATAAAACTGTTCTTGGGCTATAAGAAtaAGAAGTTACGGGTGAATATCAATGTGCCAATGAAGACAGAGCAAAAGCAAGAGCAGGAAACAACACACAAGAACATCGAGGAGGACCGAAAGCTTCTGATACAGGCAGCTATTGTGAGGATCATGAAGATGAGGAAGGTTTTAAAACACCAGCAGCTTTTGGCAGAAGTGCTGAACCAGCTTTCTTCACGATTCAAACCTCGTGTACCTGTCATCAAGaaatGCATTGACATTTTGATAGAGAAGGAATACCTGGAACGTGTAGATGGGGAAAAAGACACGTACAGTTACCTGGCATAAAAACAACATCCTCTGGAGTTTGCCGTCCTTCCTGAGATGCATCTTTTTGAGGAGCGTCAAGAGTGGACGCACACAAACCGAGGACTCTCAAGACATTGCTGAGTAAGACACTGGACCTTTTCCCTTTAAACCCAGACTGCTAAAGCGGCCAGTCTTTGTCTTTATGCCCTTAAGCTGCTCAGGATTGCCATTTACTTTTTAAAGATGTAAATAACTGGACATTGAACTAAACTCATAGTGGGACCCAGCGTCAGGGTTGCATGCTATAATGCCTCTCAATATAAAAGGACAAAAACTGATTAATTGTGATTCCGTCTTTTGGGAAACTgacatattgaaaaaaaaaaaaaaaaaaaa

Function


GO:

id name namespace
GO:0038061 NIK/NF-kappaB signaling biological_process
GO:0016567 protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2887 Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to act upstream of or within NIK/NF-kappaB signaling. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human CUL1 (cullin 1).

Ensembl:

ensembl_id ENSDART00000134947

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00047171 lncRNA downstream 128545 17233526 ~ 17236200 (-) True XLOC_023378
TCONS_00047170 lncRNA downstream 237759 17124410 ~ 17126986 (-) True XLOC_023376
TCONS_00046850 lncRNA downstream 1141959 16204788 ~ 16222786 (-) True XLOC_023367
TCONS_00047169 lncRNA downstream 1217227 16146503 ~ 16147518 (-) True XLOC_023366
TCONS_00046849 lncRNA downstream 1615331 15745070 ~ 15749414 (-) True XLOC_023364
TCONS_00047172 lncRNA upstream 3327 17403470 ~ 17406396 (-) False XLOC_023380
TCONS_00046228 lncRNA upstream 3327 17403470 ~ 17406483 (-) True XLOC_023380
TCONS_00046230 lncRNA upstream 9165 17409308 ~ 17413929 (-) False XLOC_023381
TCONS_00046229 lncRNA upstream 9165 17409308 ~ 17413936 (-) False XLOC_023381
TCONS_00047173 lncRNA upstream 9165 17409308 ~ 17413946 (-) True XLOC_023381
TCONS_00046222 mRNA downstream 297461 17048078 ~ 17067284 (-) True XLOC_023375
TCONS_00046220 mRNA downstream 315475 17040211 ~ 17049270 (-) False XLOC_023375
TCONS_00046221 mRNA downstream 316827 17041823 ~ 17047918 (-) False XLOC_023375
TCONS_00046219 mRNA downstream 325107 17031129 ~ 17039638 (-) True XLOC_023374
TCONS_00046218 mRNA downstream 335371 17027310 ~ 17029374 (-) True XLOC_023373
TCONS_00046232 mRNA upstream 17007 17417150 ~ 17892385 (-) False XLOC_023382
TCONS_00046231 mRNA upstream 17007 17417150 ~ 17892385 (-) False XLOC_023382
TCONS_00046233 mRNA upstream 20660 17420803 ~ 17444067 (-) False XLOC_023382
TCONS_00046234 mRNA upstream 21286 17421429 ~ 17892325 (-) False XLOC_023382
TCONS_00046235 mRNA upstream 21579 17421722 ~ 18179535 (-) True XLOC_023382
TCONS_00046223 other downstream 225631 17136749 ~ 17139114 (-) True XLOC_023377
TCONS_00046216 other downstream 385017 16971104 ~ 16979728 (-) True XLOC_023371
TCONS_00046210 other downstream 464621 16896808 ~ 16900124 (-) False XLOC_023369
TCONS_00046204 other downstream 809762 16554869 ~ 16554983 (-) True XLOC_023368
TCONS_00046203 other downstream 1289630 16074089 ~ 16075115 (-) True XLOC_023365
TCONS_00046236 other upstream 146610 17546753 ~ 17546869 (-) True XLOC_023383
TCONS_00046242 other upstream 1053029 18453172 ~ 18456584 (-) False XLOC_023386
TCONS_00046245 other upstream 1070023 18470166 ~ 18485491 (-) False XLOC_023387
TCONS_00046247 other upstream 1073638 18473781 ~ 18485411 (-) True XLOC_023387
TCONS_00046255 other upstream 1160287 18560430 ~ 18598641 (-) True XLOC_023389

Expression Profile


//

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_02356445_02369996.mRNA True 2737 mRNA 0.45 20 CI01000018 2355926 ~ 2370015 (-)