RNA id: XM_036949824.1


Basic Information

Item Value
RNA id XM_036949824.1
length 3403
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC118940407
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 36234292 ~ 36242642 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttatctgcgcttcttttctgctggttccttaagaaccgaatgaaatggcccgtatacgttgtaccagatatctttactcataattaaactgtcacttgtcatacaatagaccaccttgtctgaatcgatccttgaccggctcaccctcctacatatcccattattaaCAGAAACTTGGTAGCAGAGGGATGGTTTACTAACGACCCAGTCCAGAGTGGTTGATGTGGGTGTGAGGGGGCGAGTTGGTGAAAGGACGGTTCCCGGAGGACAGGTGAAAACCATTCGGGGGTGGACAACAATTCTGCTCAACTCGGGAAACTGATCTCTGGTCGACCACAAAATAAGCTCTCTCCAAACAGATACACCGTGTCGCAGAGAGGGAGCTGACTGACGTCCCGGAACAACCAAGGGTAAAAGTTGGGGACTGGGTAAGGATCaaggtccacaagagaaagtgggctgatcccaggtggactggaccgtacgaagtgaaggaggttacttcacactcagtccaggtcaaaggtaaattaGGCGCACCTTGGCACCACCTGACACATTGTACACCAGCCCCAACCCCTGCCAGAACTCTGGCTGAAGTAAGAAGTGATTTACTCACATCCAATTCGAATTCAAATTCTGACATCCCTCCCGTCTGATCATGTGGAGGAGACTCCCATCCtcagatgatagggacactagagTAGCACCATGGGCTAGAAGGGCTAGGAGACCATGGGAAAGACTGGGTTGTTCTGGCCCATTGTTTGTCCTAATTATAGTCAATGTTGTTTTGACATTGGGAGTAATGATATGGGCAGCCCAGCGTATAATCACTGACCAGGAACAGACTACCCAGCTAAACATCACCAATGCTTCAATATTCTCGGATACGCATGTTCTGTCTAAACGTCAAGTTCAGAATAATGACTTTGAGTGTACTGCAGAATTGATTAGGTCAGCTACTCTGTGTATCCCGCCTAACGCTACTACCACTGTTATACTTACCTGGGGTGTTATTGGAAGCCCAGGTGGCGGTTATGGTACTCATGCAATCAGTTGGTCTAGATCAGTGTGGTACATGACAGAAGGGGGGTATAATAAATGGACGTGGAAGAATTTAGTGGCAGAGACTGGTCCTGACTGGTCTAGCTGGACAGTGCATCAGATGGCACTCCTGTGGCGGAGCAGGTTGACGTTAACTAAAGTTACAACTGGTTTGAAATTGGTAATCAAACACAGGGAAGGTGGTATCGGCTGTACCCCCTTCTTATTGGCACCATGGGAAGAGCAGAGAGTCTATTGGCATCTTAAGATTTGTTTTACTAACATAACCACCCCTCAAGCTGTTCTTTCTAAGCGACAGGTGGTATCCACTTCGGATCCTAGATTGGGGCCTATTATCATCTCGTCCGGATTGAATCCGCCTACAGTAGATGATTCCATCCTTATGACGTCTGGAGTCTCAGGTTTCTCCAATAATTGGTTACTACTGACTGAAGAAGCTGGAAAGGCGGCCCGTACTGACTGTGTGGTATGTATGGGAGCTAGGCCTCTCCTTCGCATTGTGCCTGCAGCCTTACCTGACAATTGTGTTTTCCCTGTTATGAGATTTAATAACCCACCCCAGAACTGTTCTTCCTGGGACAAGGTTTATCCACTAGTCAAGGGCAGACAGGCACCGATTTTCTCCTCAGATGTTGCTGAAGGGAATTTCACATGTGTGGACATGACCCGAGGACCTCCAGATTTAGGTACTGTCCCACCCCACTGGTGTAATGCTACTTACTTTCCTAATTCTCCCCTTACAGTTGTCACCAGAGCAGATGTCTGGTGGTGGTGCGGTGGTAAGCGGCTGTTTGGGCGTTTCCCTAAAAATTCTACTGGTCTTTGTGctcttgtctctctgcttctTCCCATTTCAGTATACCCAATAGGTGTGACTGAGTTGGTGGCCCAAATTGAAAAGGATGCCTTCCCGTCCAAGAAAAAGAGGATGGCTGGATCTGATGGTGGTGACCCTACGTATATAGACGCCATAGGAGTTCCCAGAGGGGTCCCGGATGAGTATAAACTTGCTAACCAGATTTCTGCTGGGATTGAATCTTCTATTTGCTGGTGGTGTACCAtcaacaaaaatgtagatcgaaTTAACTATATCCATTTTAATGTTCAGAAATTGGGCAACTGGACACAGCAAGGTTTTGAAGCCGTCCATGGTCAACTGGCTGCAACCAGCCTTATGGCCTTCCAGAATCGTATCGCAGTTGACATGCTCCTAGCTGAGAAAGGAGGTGTCTGTTCTATGTTTGGGGAACAATGCTGTACTTTTATCCCTAATAACACTGCTAGTGATGGTAGCTTGACCGTAGCCCTAGAAGGTTTGAGGACTCTTAATGGTAAAATGAAATCTCATTCTGGGATTGATACCTCAATGTGGGACTCCTGGATGAGTGCCTTTGGTAAATATAAAACCCTGGTCTCCTCCATTTTGGTCTCCATTTCGGTGTTCGCGGCCATTTTGGTTCTCTGTGGATGCTGTTGCATTCCATGTATCCGTTCCCTCACCACTAGGGTTATCTCTAGAGCTATTGACCCTTCCCCCCTTTCCCAGATGTTTCCTCTGCTTGCTAATGACCTGCCCGAATTTGAGGATGAGGTTGAGAGTGCCTACTAGGTTTTGTTTTTTCTTTTCATGAAATGCTATGACTGCTGAAATAAGGGATAATGAGTGACACCCTAGTGGGTGTCAAAAAGGGGGGCTTAAATTTCACATCATTttcttttgttctgtttttcaATGAGTTGTTGTTCTCTTTTGACATGAGGGTTGCAAGTTCCTAGGTGGCTGGTAGCCAATCTAGTACATAGTGGGATCGAATGGAGAACATGGAGGTATTTTAAACTTTGTAATTGTTAGCCTAGTTTATGTCACATCTCTTAGGAGATGTGAAGAGAGGGAATCACAAAACTTTTCCTTCTGGGAAAAGTTTTCTTTTTGTGTCTGGATATAGTTAGGTTGTGTCACGTCTCTGGGGAGACGTGAAGAGAGGGAtttgtaaggaagtgctatttcttatgcaggtgaccagcctactgctattacattgctataactgagacaacgtattttcacagtaaaacatgttaggtcccatacaggatagctcccacacccacacacacagcacacacacattacacacactaactgccgaggacacacagataagacatacacccacacattgggaggaagagacagccttgacttgcagaaaccagcgcacacacctaatctcctttctagccgaacattgtgtgactgaggacagcgcacacacctaatctcctttttagctgaacattgtgtgacaaagaacaagactcagagggatgacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1652323 lncRNA upstream 8762 36224669 ~ 36225530 (+) True G1443429
TU1652318 lncRNA upstream 21258 36193204 ~ 36213034 (+) False G1443424
TU1652317 lncRNA upstream 21258 36203019 ~ 36213034 (+) True G1443424
TU1652314 lncRNA upstream 54421 36179503 ~ 36179871 (+) True G1443421
TU1652313 lncRNA upstream 56082 36177995 ~ 36178210 (+) True G1443420
TU1652763 lncRNA downstream 60642 36303159 ~ 36303360 (+) True G1443842
TU1652816 lncRNA downstream 143357 36385874 ~ 36386365 (+) True G1443875
TU1652948 lncRNA downstream 240620 36483137 ~ 36483371 (+) True G1444006
TU1653076 lncRNA downstream 408994 36651511 ~ 36651713 (+) True G1444105
TU1653083 lncRNA downstream 437760 36680277 ~ 36680877 (+) True G1444112
XM_021568328.2 mRNA upstream 278645 35855110 ~ 35955647 (+) False LOC110493827
XM_021568329.2 mRNA upstream 278645 35855110 ~ 35955647 (+) False LOC110493827
XM_021568331.2 mRNA upstream 278645 35855110 ~ 35955647 (+) False LOC110493827
XM_036949803.1 mRNA upstream 278645 35855130 ~ 35955647 (+) True LOC110493827
XM_021568325.2 mRNA upstream 386832 35825533 ~ 35847460 (+) True LOC110493822
XM_021568352.2 mRNA downstream 167686 36410203 ~ 36417254 (+) True LOC110493841
XM_036949841.1 mRNA downstream 249765 36492282 ~ 36541078 (+) False LOC110493174
XR_005036969.1 mRNA downstream 249766 36492283 ~ 36513694 (+) False LOC110493174
XR_005036970.1 mRNA downstream 249766 36492283 ~ 36514362 (+) False LOC110493174
XM_036949840.1 mRNA downstream 249780 36492297 ~ 36541078 (+) False LOC110493174
TU1652130 other upstream 482502 35746872 ~ 35751790 (+) True G1443251
TU1652084 other upstream 489650 35673964 ~ 35744642 (+) True G1443221
TU1651374 other upstream 1049752 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other upstream 1049752 35168898 ~ 35184540 (+) True LOC110493802
TU1650494 other upstream 1931683 34301487 ~ 34302609 (+) False LOC110493778
TU1652778 other downstream 88718 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 249860 36492377 ~ 36529730 (+) False LOC110493174
TU1652965 other downstream 300502 36543019 ~ 36557771 (+) True LOC110493174
TU1653174 other downstream 615049 36857566 ~ 36861009 (+) True G1444198
TU1653950 other downstream 1159680 37402197 ~ 37402492 (+) True G1444933

Expression Profile