RNA id: TU1652322


Basic Information

Item Value
RNA id TU1652322
length 1782
RNA type TUCP
GC content 0.48
exon number 1
gene id LOC118940407
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 36234292 ~ 36242642 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGGAAAGAGATATTTGCTAGTAATGGTAGACAGATTCTCTAAGTGGGTAGAGGCCATTCCTACAGCAAAGGAGGATGCGAAGTCAGTCATTAAGTGGCTACAAAAGGAACTTATACCCAGGTATGGGGTTCCTCGACAAATCAGGTCCGACAATGGGTCCCACTTCTCAAATCAGCACCtaagacaggtggaggagaggtttgGCATTACACACAAGTTTGGCTCTGTGTATAGGCCGCAATCGCAGGGCCTTGTGGAACGCTGTAATCAAAATCTGAAAGCTAAAATAGCTAAAGTATGTGCAGGAACCAAATTGACCTGGGTGGAAGCCCTGCCCCTGGCACTGATGGCCATGAGGTCCTCACCAGGTGCAGGGACACATCTCTCACCCCATGAAATAATGACAGGTAGAGTAATGCCAGGGCCACCAAgagagggaggtcatatgcccccTCTTGATGTGCACCAGATAGGGATGTCTGACTATGTGAAGAAATTGACGGAATTGTCTGCAGCTCTCTCCAAACAGATACACCGTGTCGCAGAGAGGGAGCTGACTGACGTCCCGGAACAACCAAGGGTAAAAGTTGGGGACTGGGTAAGGATCaaggtccacaagagaaagtgggctgatcccaggtggactggaccgtacgaagtgaaggaggttacttcacactcagtccaggtcaaaggtaaattaGGCGCACCTTGGCACCACCTGACACATTGTACACCAGCCCCAACCCCTGCCAGAACTCTGGCTGAAGTAAGAAGTGATTTACTCACATCCAATTCGAATTCAAATTCTGACATCCCTCCCGTCTGATCATGTGGAGGAGACTCCCATCCtcagatgatagggacactagagTAGCACCATGGGCTAGAAGGGCTAGGAGACCATGGGAAAGACTGGGTTGTTCTGGCCCATTGTTTGTCCTAATTATAGTCAATGTTGTTTTGACATTGGGAGTAATGATATGGGCAGCCCAGCGTATAATCACTGACCAGGAACAGACTACCCAGCTAAACATCACCAATGCTTCAATATTCTCGGATACGCATGTTCTGTCTAAACGTCAAGTTCAGAATAATGACTTTGAGTGTACTGCAGAATTGATTAGGTCAGCTACTCTGTGTATCCCGCCTAACGCTACTACCACTGTTATACTTACCTGGGGTGTTATTGGAAGCCCAGGTGGCGGTTATGGTACTCATGCAATCAGTTGGTCTAGATCAGTGTGGTACATGACAGAAGGGGGGTATAATAAATGGACGTGGAAGAATTTAGTGGCAGAGACTGGTCCTGACTGGTCTAGCTGGACAGTGCATCAGATGGCACTCCTGTGGCGGAGCAGGTTGACGTTAACTAAAGTTACAACTGGTTTGAAATTGGTAATCAAACACAGGGAAGGTGGTATCGGCTGTACCCCCTTCTTATTGGCACCATGGGAAGAGCAGAGAGTCTATTGGCATCTTAAGATTTGTTTTACTAACATAACCACCCCTCAAGCTGTTCTTTCTAAGCGACAGGTGGTATCCACTTCGGATCCTAGATTGGGGCCTATTATCATCTCGTCCGGATTGAATCCGCCTACAGTAGATGATTCCATCCTTATGACGTCTGGAGTCTCAGGTTTCTCCAATAATTGGTTACTACTGACTGAAGAAGCTGGAAAGGCGGCCCGTACTGACTGTGTGGTATGTATGGGAGCTAGGCCTCTCCTTCGCATTGTGCCTGCAGCCTTACCTGACAATTGTGTTTTCCCTGTTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1652323 lncRNA upstream 13414 36224669 ~ 36225530 (+) True G1443429
TU1652318 lncRNA upstream 25910 36193204 ~ 36213034 (+) False G1443424
TU1652317 lncRNA upstream 25910 36203019 ~ 36213034 (+) True G1443424
TU1652314 lncRNA upstream 59073 36179503 ~ 36179871 (+) True G1443421
TU1652313 lncRNA upstream 60734 36177995 ~ 36178210 (+) True G1443420
TU1652320 lncRNA downstream 1285 36242010 ~ 36242642 (+) True LOC118940407
TU1652763 lncRNA downstream 62434 36303159 ~ 36303360 (+) True G1443842
TU1652816 lncRNA downstream 145149 36385874 ~ 36386365 (+) True G1443875
TU1652948 lncRNA downstream 242412 36483137 ~ 36483371 (+) True G1444006
TU1653076 lncRNA downstream 410786 36651511 ~ 36651713 (+) True G1444105
XM_021568328.2 mRNA upstream 283297 35855110 ~ 35955647 (+) False LOC110493827
XM_021568329.2 mRNA upstream 283297 35855110 ~ 35955647 (+) False LOC110493827
XM_021568331.2 mRNA upstream 283297 35855110 ~ 35955647 (+) False LOC110493827
XM_036949803.1 mRNA upstream 283297 35855130 ~ 35955647 (+) True LOC110493827
XM_021568325.2 mRNA upstream 391484 35825533 ~ 35847460 (+) True LOC110493822
XM_021568352.2 mRNA downstream 169478 36410203 ~ 36417254 (+) True LOC110493841
XM_036949841.1 mRNA downstream 251557 36492282 ~ 36541078 (+) False LOC110493174
XR_005036969.1 mRNA downstream 251558 36492283 ~ 36513694 (+) False LOC110493174
XR_005036970.1 mRNA downstream 251558 36492283 ~ 36514362 (+) False LOC110493174
XM_036949840.1 mRNA downstream 251572 36492297 ~ 36541078 (+) False LOC110493174
TU1652130 other upstream 487154 35746872 ~ 35751790 (+) True G1443251
TU1652084 other upstream 494302 35673964 ~ 35744642 (+) True G1443221
TU1651374 other upstream 1054404 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other upstream 1054404 35168898 ~ 35184540 (+) True LOC110493802
TU1650494 other upstream 1936335 34301487 ~ 34302609 (+) False LOC110493778
TU1652778 other downstream 90510 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 251652 36492377 ~ 36529730 (+) False LOC110493174
TU1652965 other downstream 302294 36543019 ~ 36557771 (+) True LOC110493174
TU1653174 other downstream 616841 36857566 ~ 36861009 (+) True G1444198
TU1653950 other downstream 1161472 37402197 ~ 37402492 (+) True G1444933

Expression Profile