RNA id: XM_021568367.2


Basic Information

Item Value
RNA id XM_021568367.2
length 2855
RNA type mRNA
GC content 0.48
exon number 12
gene id rbpjl
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 36951171 ~ 36978642 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTAATACACTACCATTAGCGCTAACACACAGTATCCATATTAGTGAGTCACAGTGAATTCACAGGCAGAGCTGTATTGAATGGAGCGGAGTGGCTTCTCCGAGGAAGTAAAGCACAGTAGCAGCAGAACCCCTGTTGTTGGGACATGCATGGTGTAGCTACAAAAGGACTTCCTCTTTTCAGGTTTAGCACTGCTACCAGACCATGCAGAGCCTCGTCGGGGAGGCAGAAACTGGGGAAGAGAGGCGAGAAGCATCATTGCAGATAACAGATTCCTTGGACACCGCCCACACGTACCAACCCTGGGATTCGCTAACTCACCTGGCGACGGTGCTGGGTAGGACAGAACCTCGGCCGTCGGAATGGAACAGATTGGACCAAAGTTTCTCTCCACTGCCCAGAGTGACCAGGGAGTCAGTGAGACAGTATCTGCAGTTTCCCCCTGACCAATCTGTGCGAATACTCCATGCAAAGGTCGCCCAGAAATCATACGGCAACGAGAAACGGTTCTTCTGCCCTCCTCCTTGTGTTTACATCAGTGGCTCAGGATGGAAACTGAAACAAGACATTTTGAATGCCACTGGTGCAGGGGACTCCTGTTACAGACTCTATGGTTATATGGGCCTGGATAGCTCCTGTGTGACCCAGGCAGACACCTACAAACTAGCCTTCGAGGACCAGCCTGATGCCAGGATGTTTGCCTGCGCCAAGTCCCTGTACATCTCTGACACAGACAAAAGGAAGCACTTTCGCCTGGTCCTCAAGCTCTTCCTTGGTAACGGGCAGGAGATTGGCTCCTTCCTCAGTAAGCTGATCAAAGTTATCTCCAAACCGTCCCAGAAGAGGCAGTCTATGAAGAACGCTGACTTGTGTATTTCCACGGGGTCGAGGGTGGCTCTATTCAACCGCTTGCGGTCCCAAACGGTCAGCACACGTTACCTGGCCGTAGAACGAGGGGCCTTTGTAGCCAGTGCCAGACAGTGGACTGCATTTACAGTCACTCTAGTGGAGGACCGGCAGGCTGACTCGGAGGAGTTCACGGTGTGTGAGGGATTCATCTGCTACGGCTGTGTGGTTCAGCTGGTCTGCACTGACTCCGGGGTGGCCCTGCCCCCCatgGTGATCCGCAAGGTGAACAAGCAGCACGCCATCCTAGATGTGGACGAGCCCGTCTCCCAGCTTCACAAGTGTGCCTTTCAGTTCAAGGACAACAGCCAGATGTACCTCTGTCTGTCTAATGAGAGAATCATACAGTACCAGGTCTCATCCAGTCTGAGGGACCAGAGCAGAGAGGTGCTGAACGATGGTTCATGTTGGACCATCATCGGTACAGAGGCAGTGGAGTATACGTTCTGTGAGGGCCTGGCCTGCGTTCAGGGCGCCATCAGCCCAATACCTGTCATCACAGGACTGGAGGTGAATGGTGGAGGACACGTAGCCATGCTAGAAGTAAATGGAGAAAACTTTGGCCCCCATCTGAAAGTTTGGTTTGGAAATGTGGAGGCAGAAACTATGTTCAGGTCACCAAAGTCCATGCTGTGTGTGGTTCCAGACGTGTCCGTGTTCAGTGGGGAGTGGAGATGGCTGCGGCACCCCATCACCGTACCTCTGTCCCTCATCCGTCTGGATGGTTTGATCTACAGGAGCACCTTCAGCTTCACCTACACCCCTGAACACAACACCCCCCCGCAGGCCAGAGGGGCACTGCAAAATGCCCCAGAGTCTGACACTCTCATAGACTTCATCCACCAAGAGTTCACACGCACCAACTTCCACTTGTTCATGCAGAACTAGCTAGTAGGGCTGGGCTGCATTAGGATTCTTTACCCTTCTCCTGAGGTGTGCACTCATTCACTCCCCCTCCTGCATTTAAAAGCATTGGATCAGAGCAAGCATGACTGGGGGAAGTTTCCACCATATTCCTGACAGCAGCTCAttcctttttcttcttctttttttagaGTGCTTTTTATGTCCCTCAGGAATGATGTATGTACATGTTGCTAAACACTCAATTGAACAGTTGGATCACATACATACATAGTGCTCCCGAGGCTCCCGTGTGGCGcggctgtctaaggcactgcatctcagtgttagaggtgtcactacagacccttgttcaattccaggctgtatcacaaccggctgtgattgggagtcccatagggcggtgcacaatgtgcccagcgtcatctgggttagggtttagctggggtaggctgtcattgtaaataagaatttgttcttaactgacttgcctagttaaggataaataaatacatctatGCAGTAAAGTTACTAAAGTTATTTGTTTTCTCTGTAAATCCCCATTTTGGCATGTCCCAAGTCATGTACGTCCAACTTCTAGGAAGAatttaacccacttaaccccaagTTTTCACCGAGTTTTCTCTATCATTTtgaagccctagttattttgttgctttgggaAAGAAATTTCAAAAGATTTTTGTGGTTAGTAATTAATATACATGTGTCCCTCAGGTGAgatggttctactctttttggacattttctgGTACACGTCAActctgttacccatagatagaaatgtattaaaaagtaATGTTTTTTGTTAAGGTTGCATAAAACTGCACCCCCCCTGCACACAAAAAGctcccattccccctgtcacaaggggagaTATTGCTGATTTAAGATTAAATCCACAACCCTTTTACGGTCAACCCTGTAGCTGTAATAGACATTTTATAGCAATCTTtctttaaatgtaaccttttgaCAAGGAAAGCATGTTTATTatgacataatataacatctactttgtgcatgacagtgCTCTTTACGACAgtgttaaaattaggtgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1653226 lncRNA upstream 18822 36932061 ~ 36932349 (+) True G1444245
TU1653221 lncRNA upstream 25165 36925727 ~ 36926006 (+) True G1444240
TU1653220 lncRNA upstream 25522 36925267 ~ 36925649 (+) True G1444239
TU1653216 lncRNA upstream 29368 36921591 ~ 36921803 (+) True G1444235
TU1653205 lncRNA upstream 37152 36911630 ~ 36914019 (+) True G1444227
TU1653214 lncRNA downstream 21387 37000029 ~ 37002478 (+) True G1444233
TU1653288 lncRNA downstream 64287 37042929 ~ 37053253 (+) False G1444303
TU1653287 lncRNA downstream 68860 37047502 ~ 37053253 (+) True G1444303
TU1653345 lncRNA downstream 136807 37115449 ~ 37115648 (+) True G1444356
TU1653346 lncRNA downstream 137033 37115675 ~ 37115875 (+) True G1444357
XM_021568359.2 mRNA upstream 148872 36795839 ~ 36802299 (+) True LOC110493846
XM_021568356.2 mRNA upstream 181389 36723934 ~ 36769782 (+) True LOC110493845
XM_021567427.2 mRNA upstream 274425 36670778 ~ 36676746 (+) False if6
XM_021568370.2 mRNA downstream 50939 37029581 ~ 37033137 (+) True LOC110493852
XR_005036975.1 mRNA downstream 132610 37111252 ~ 37112362 (+) True LOC118940422
XR_005036977.1 mRNA downstream 316680 37295322 ~ 37301815 (+) True LOC118940423
XR_005036702.1 mRNA downstream 324240 37302882 ~ 37307944 (+) True LOC118940100
XM_021568382.2 mRNA downstream 331070 37309712 ~ 37317703 (+) False LOC110493859
TU1653174 other upstream 90162 36857566 ~ 36861009 (+) True G1444198
TU1652965 other upstream 393400 36543019 ~ 36557771 (+) True LOC110493174
TU1652966 other upstream 421441 36492377 ~ 36529730 (+) False LOC110493174
TU1652778 other upstream 575797 36331235 ~ 36375374 (+) True G1443844
TU1652322 other upstream 710446 36238944 ~ 36240725 (+) False LOC118940407
TU1653950 other downstream 423555 37402197 ~ 37402492 (+) True G1444933
TU1653937 other downstream 456133 37434775 ~ 37440412 (+) True chd6
TU1654008 other downstream 607238 37585880 ~ 37588727 (+) False rbl1
TU1654009 other downstream 608023 37586665 ~ 37588727 (+) True rbl1
TU1655280 other downstream 1330487 38309129 ~ 38310864 (+) True G1446149

Expression Profile