RNA id: TCONS_00046234


Basic Information

Item Value
RNA id TCONS_00046234
length 4147
RNA type mRNA
GC content 0.50
exon number 23
gene id XLOC_023382
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17417150 ~ 18179535 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaaatGTGATGAAGCTCTGGTCACACAACTACTCCACAATGCCTTCACAAGCTCTTCTGTGTTCGCTAGTAGCTATGTTCCAGGATACGCCAAACTTAACAAAAGAGGAGGTGCTGGGGGCTGGTCTCCGCTGGACAGTGATCATTACCAGTGGCTGCAGGTCGACCTGGGAAGCAGAAAACAGGTCACAGCCGTCGCCACACAGGGTCGATATAGCAGTTCTGATTGGACAACACGATACCGGCTGCTCTATAGTGACACAGGAAGAAACTGGAAACCATACCATCAAGATGGCAACATCTGGGCATTTGCAGGGAACTCCAATACAGAGAGTGTGGTTCGGCATGACCTGCAAAACCCGGTTGTGGCCCGTTATTTGCGCATCATTCCTTTAGACTGGAGTGAAGAGGGACGAATTGGCCTCAGGTTCGAGATCTACGGCTGCCCGTACTGGGCAGATGTGATTAATTTTGATGGGCAGGGGGTGATCTCTTACCGCTTCAAAATGAAGAAGATGAAGATTCTGAAGGACGTGATAGCCCTGAAGTTTAAAACATCTGAGAGTGAAGGGGTGATTCTGCACGGAGAGGGTCAACAGGGAGACTACATCACCTTGGAGTTGAGAAGAGGCCGACTTCTGCTGCAGATAAACCTCGGAAGCAATCAGCACGGCTCCATCCTGGGCCATACATCAGTGACCAGCGGCAGTCTGCTGGACGATCATCATTGGCATTCTGTAGTAATTGAGCGCTACAGGAGAAATGTCAATTTCACCCTTGATCAGCACACTCAGCACTTCCGCACCAACGGGGAGTTTGACCACCTTGACCTGGACTATGAGCTGACTTTTGGAGGAATGCCGTATTCCGGAAAGCCAGTCATAGGAGGAAGAAGAAATTTCAAAGGCTGCATGGAAAGCATTAACTACAATGGAGAAAACATCACTGACTTggccagaagaaagaaactggacACGTCTAGCTTTCGCAACTTGACTTTCTCCTGCGTGGACACACACACGTTCCCCGTCTTCTTCAATGGCACCAGCTTTCTTCAGCTGCCAGGGAGGAGGGACCACAATATGGTTTCTGTTGGATTCCAGTTTCGTTCCTGGAACCCCAGCGGCCTGCTCCTGTTTAGCTCCTTGGCAGATGGAATGCTGGAATTGGCTCTAAACGATGGAAAAGTCACAGCACACATTAACGTCACCCAGCAGAAAAACATGCGTGTGGACATTGCGTCAGGTTCTGGTCTGAATGATGGTGAATGGCATGATGTCCGCTTCCTGGCCAAAGAGAACTTTGCCATGCTGACCATTGATGGGGATGAAGCATCAGCTGTGAGAACCAACTCTCCGGTCCTGATCACCACTGGGAGCACGTACCACTTTGGAGGCAAAACCAGAGCATCCCCCATCCAGCGCTCGTTCCAGGGCTGCATGCAACTTATTCAGGTGGATGATCAGCTGGCAGACCTGACCGCAGTAGAGCAGGGAAGAATCGGAGCCTTCGAAAACGTCAGCCTGGACATGTGTGCCATCATTGACAGATGTATGCCAAACCACTGTGAACACGGAGGTCGATGCAGTCAGACATGGGACAGTTTCACATGCACCTGTGATGGCACAGGGTACACCGGAGCCACCTGTCACACATCTGTCTATGAGCAATCATGTGAGGCCTACAAGCATTTAGGAAGATCATCTGATGCCTACTGGATTGACCCAGATGGAAGTGGACCATTAGGCCCTTTTAAAGTCATCTGCAACATGACAGagGACAAGGTTTGGACGACAGTGGTGAATAACCTACCGGCACAGACAGCAGTAACTGGCTCCAGCCGGGAGAGACGGACAGTTTTACAGCTGAACTACAGTGCGTCTATGGAGCAGGTCACAGCAATAACCAACAGCGCTGAGCACTGCGAGCAGCACGTCTCCTACGCCTGCCGAATGTCACGTCTACTCAACACTCCAGaTGGGACGCCCTACACATGGTGGGTGGGCCGCGGTAACGAGAAGCACTTCTACTGGGGCGGATCTGCTCCTGGCATTCAGAAGTGTGCTTGTGGCATCGAGCGCAACTGCAGCGACTCCAAATACTACTGCAACTGTGACGCGGACCAGAAGCAGTGGAGGGATGATTCCGGACTTCTGGTGTATAAAGACCATTTACCGGTCAGTCAAGTGGCTGTCGGGGACACAAATCGACCCGGTTCGGAAGCCAAGTTGACCGTGGGACCTCTTCGTTGCCATGGAGACCGAAGCTACTGGAACGCAGCGTCCTTCAACACGCCATCTTCGTACCTGCACTTTTCCACTTTTCAAGGTGAAACAAGTGCTGATATCTCCTTTTACTTCAAGACCTCCGCTCCCTATGGCGTCTTCCTGGAAAACCTTGGAAACACCGATTTCATCCGTCTGGAACTGAAATCACCTATGGTGGTGTCGTTTTCTTTCGATGTCGGAAACGGACCAGTGGAGCTGAACGTCCACTCTCCTACCCCATTGAATGATGACCAGTGGCACCGGGTCAGTGCTGAGAGAAACACTAAAGAGGCTATTCTTCAACTAGACCAGAAATACAAGGAGATCAGACCTGCACCTACACAGGGCCACACGCGCCTGGAGCTCTACAGCCAGCTGTATGTGGGTGCAGCAGGAGGTCAGAGAGGATTTTTGGGATGCATTCGCTCTCTGAAGATGAACGGCGTGACCCTTGACTTAGAAGAGAGGGCGAAAGTCACTCCTGGTGTAAAGCCTGGCTGTTCGGGTCACTGCACCAGTTTTGGGATGTATTGTCGTAATGGTGGCAAATGTGTGGAGAAATACAACGGCTATTCCTGCGACTGCACCACCACCGCTTATGATGGGCCTTTCTGTTCAAAAGATGTTGGTGGTTTCTTTGAAGCAGGAACACTGGTTAAGTATAATCTGGTGCCTGAAGTGCTGGCTGCAGCTTCCAGCCTGGATGAAAAGAGCATAATCCACAACCTTCCAGTCGAAACAAACCTGACACATGAAGACCTGACCTTCAGCTTCAGCACCTCCACCTCTCCCAGTCTTCTGGTGTACGTCAGCTCAAAGACCCAGGATTACATGGCTGTGGTGCTCCGTCACAATGGGACCCTGCAGCTGCGGTACAGCTTGGGCGGCCTCAGAGAGCCCTTCACCATTGATATTGACCAGAGGAACTTGGCCAACGGGCAGCCACACACCGTCAACATCTCTCGCGTGGAGAGAGACATAGAAGTACAGTTGGATCATTATCCCGCCGTCACCTACAGCCTGCCCGAAGCCTCAGACACTCAGTTTACCCTGGTCAAGTCACTCTTCCTGGGTAAAGTCTTTGAAACCGGTTACATTGATCCAGTGCTTATAGAAAAATACAACACCCCGGGGTTTGTGGGTTGCCTGTCCAGAGTCCAGTTCAACAGCATCGCTCCTCTGAAAGCGGCACTCAGGTCCCGCGGTTCAGTGTCCGTCTCGCACCAGGGGAAACTGGTGGAATCAAACTGCGGAGCTTCACCCCTCACCATCCCACCCATGTCTGCAGCAACCGATCCATGGCACCTGGATGCAGGTGCTGATTTCCCCTTCAATGAGGAAAGAGTCATACCAGATGGAGTTAACAGAAATTCAGCTATAATAGGAGGCATCATTGCGGTGGTGATCTTCACTATTCTGTGCACTCTGGTGTTTCTGATCCGGTACATGTTTCGCCATAAAGGCACATACCACACCAATGAAGCCAAGGGGGGAGAGTCGTCCGAATCAGCCGACGCCGCCATTATTGGCACCGAGGCCAATTTCACAGAGACCATCGACGAAAGCAAGAAGGAATGGTTCATCTAGGGGTGCACAGACTCTTTcagaatcagtttttttttcagtatcagAACTAATGTTTTGGGATCAAGCCCATCACCGGTTTGAGAAACTGTACTGTACATAGTGACCGGCTTGTCTCTTTCTATTGTGTTTTGGCAGAAGTCTTTTAAGTGTGTAATATCTGCATCACGTTATTGAATCACGTCACCAcgtgttccttttttttttacatgaaataaTAATTTTGCCAAAATCCTTTCTTTTACGAAAAGTCGAATCATGTTCTTCTTGTGTTCTTCTGATTATACAAAAAGTCC

Function

GO:

id name namespace
GO:0071205 protein localization to juxtaparanode region of axon biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120328-3 Predicted to act upstream of or within protein localization to juxtaparanode region of axon. Predicted to be located in membrane and paranodal junction. Predicted to be integral component of membrane. Is expressed in anterior lateral line ganglion and posterior lateral line ganglion. Human ortholog(s) of this gene implicated in several diseases, including Pitt-Hopkins syndrome; autism spectrum disorder (multiple); communication disorder (multiple); cortical dysplasia-focal epilepsy syndrome; and social phobia. Orthologous to human CNTNAP2 (contactin associated protein 2).

Ensembl:

ensembl_id ENSDART00000154039

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047173 lncRNA downstream 7483 17409308 ~ 17413946 (-) True XLOC_023381
TCONS_00046229 lncRNA downstream 7493 17409308 ~ 17413936 (-) False XLOC_023381
TCONS_00046230 lncRNA downstream 7500 17409308 ~ 17413929 (-) False XLOC_023381
TCONS_00046228 lncRNA downstream 14946 17403470 ~ 17406483 (-) True XLOC_023380
TCONS_00047172 lncRNA downstream 15033 17403470 ~ 17406396 (-) False XLOC_023380
TCONS_00046852 lncRNA upstream 129249 18021574 ~ 18022214 (-) False XLOC_023384
TCONS_00046851 lncRNA upstream 129249 18021574 ~ 18022214 (-) True XLOC_023384
TCONS_00046238 lncRNA upstream 551866 18444191 ~ 18445079 (-) False XLOC_023385
TCONS_00046239 lncRNA upstream 551866 18444191 ~ 18446604 (-) False XLOC_023385
TCONS_00046240 lncRNA upstream 553362 18445687 ~ 18446604 (-) True XLOC_023385
TCONS_00046226 mRNA downstream 20957 17365102 ~ 17400472 (-) False XLOC_023379
TCONS_00046224 mRNA downstream 21286 17364745 ~ 17400143 (-) False XLOC_023379
TCONS_00046225 mRNA downstream 32166 17365102 ~ 17389263 (-) False XLOC_023379
TCONS_00046222 mRNA downstream 354145 17048078 ~ 17067284 (-) True XLOC_023375
TCONS_00046221 mRNA downstream 373511 17041823 ~ 17047918 (-) False XLOC_023375
TCONS_00046237 mRNA upstream 551864 18444189 ~ 18446604 (-) False XLOC_023385
TCONS_00046241 mRNA upstream 555783 18448108 ~ 18467064 (-) False XLOC_023386
TCONS_00046244 mRNA upstream 577441 18469766 ~ 18477672 (-) False XLOC_023387
TCONS_00046246 mRNA upstream 577842 18470167 ~ 18477673 (-) False XLOC_023387
TCONS_00046248 mRNA upstream 593541 18485866 ~ 18510631 (-) True XLOC_023388
TCONS_00046223 other downstream 282315 17136749 ~ 17139114 (-) True XLOC_023377
TCONS_00046216 other downstream 441701 16971104 ~ 16979728 (-) True XLOC_023371
TCONS_00046210 other downstream 521305 16896808 ~ 16900124 (-) False XLOC_023369
TCONS_00046204 other downstream 866446 16554869 ~ 16554983 (-) True XLOC_023368
TCONS_00046203 other downstream 1346314 16074089 ~ 16075115 (-) True XLOC_023365
TCONS_00046242 other upstream 560847 18453172 ~ 18456584 (-) False XLOC_023386
TCONS_00046245 other upstream 577841 18470166 ~ 18485491 (-) False XLOC_023387
TCONS_00046247 other upstream 581456 18473781 ~ 18485411 (-) True XLOC_023387
TCONS_00046255 other upstream 668105 18560430 ~ 18598641 (-) True XLOC_023389
TCONS_00046256 other upstream 732927 18625252 ~ 18625367 (-) True XLOC_023390

Expression Profile

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