RNA id: TCONS_00046852


Basic Information

Item Value
RNA id TCONS_00046852
length 554
lncRNA type intronic
GC content 0.35
exon number 2
gene id XLOC_023384
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 18021574 ~ 18022214 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgaaaggtgggtaaaatatttattttgaactactatgcctggcatatccagataaaataaatattacagtgtatttatcaatgatacttttgcagcaaggaaagtgaaacttcagctagaccttgagttcagtttacaacatgaagatcctgctttcaacatctgatcaacacctgattttcatctgaggtaaaaaatagataagtaaatgaaacataataatattaatacattttttctagaattgtatattttgtggtgtgggtttgttttatgaaattctctcttgtttctttttgctgtttgcagagtaccaacatgttacaaatgagaattttccccacaaattctttgcacaactgaaccaccacctatttcatttgatgacaattttaaggcaaacagcatccaaaactggcaagacagcagattccctggctaatcttttaaaggtttatgatgagcaggaactgcatgatgtcaactcatgacggactactgttatcagaggtcttttggtcttgctgcgtgagcgtggcttaagattctttag

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0000154 rRNA modification biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0061061 muscle structure development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047173 lncRNA downstream 607628 17409308 ~ 17413946 (-) True XLOC_023381
TCONS_00046229 lncRNA downstream 607638 17409308 ~ 17413936 (-) False XLOC_023381
TCONS_00046230 lncRNA downstream 607645 17409308 ~ 17413929 (-) False XLOC_023381
TCONS_00046228 lncRNA downstream 615091 17403470 ~ 17406483 (-) True XLOC_023380
TCONS_00047172 lncRNA downstream 615178 17403470 ~ 17406396 (-) False XLOC_023380
TCONS_00046238 lncRNA upstream 421977 18444191 ~ 18445079 (-) False XLOC_023385
TCONS_00046239 lncRNA upstream 421977 18444191 ~ 18446604 (-) False XLOC_023385
TCONS_00046240 lncRNA upstream 423473 18445687 ~ 18446604 (-) True XLOC_023385
TCONS_00046243 lncRNA upstream 438461 18460675 ~ 18467038 (-) True XLOC_023386
TCONS_00046254 lncRNA upstream 538039 18560253 ~ 18568486 (-) False XLOC_023389
TCONS_00046232 mRNA downstream 129189 17417150 ~ 17892385 (-) False XLOC_023382
TCONS_00046231 mRNA downstream 129189 17417150 ~ 17892385 (-) False XLOC_023382
TCONS_00046234 mRNA downstream 129249 17421429 ~ 17892325 (-) False XLOC_023382
TCONS_00046233 mRNA downstream 577507 17420803 ~ 17444067 (-) False XLOC_023382
TCONS_00046226 mRNA downstream 621102 17365102 ~ 17400472 (-) False XLOC_023379
TCONS_00046237 mRNA upstream 421975 18444189 ~ 18446604 (-) False XLOC_023385
TCONS_00046241 mRNA upstream 425894 18448108 ~ 18467064 (-) False XLOC_023386
TCONS_00046244 mRNA upstream 447552 18469766 ~ 18477672 (-) False XLOC_023387
TCONS_00046246 mRNA upstream 447953 18470167 ~ 18477673 (-) False XLOC_023387
TCONS_00046248 mRNA upstream 463652 18485866 ~ 18510631 (-) True XLOC_023388
TCONS_00046236 other downstream 474705 17546753 ~ 17546869 (-) True XLOC_023383
TCONS_00046223 other downstream 882460 17136749 ~ 17139114 (-) True XLOC_023377
TCONS_00046216 other downstream 1041846 16971104 ~ 16979728 (-) True XLOC_023371
TCONS_00046210 other downstream 1121450 16896808 ~ 16900124 (-) False XLOC_023369
TCONS_00046204 other downstream 1466591 16554869 ~ 16554983 (-) True XLOC_023368
TCONS_00046242 other upstream 430958 18453172 ~ 18456584 (-) False XLOC_023386
TCONS_00046245 other upstream 447952 18470166 ~ 18485491 (-) False XLOC_023387
TCONS_00046247 other upstream 451567 18473781 ~ 18485411 (-) True XLOC_023387
TCONS_00046255 other upstream 538216 18560430 ~ 18598641 (-) True XLOC_023389
TCONS_00046256 other upstream 603038 18625252 ~ 18625367 (-) True XLOC_023390

Expression Profile

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