RNA id: XM_036949861.1


Basic Information

Item Value
RNA id XM_036949861.1
length 1636
RNA type mRNA
GC content 0.48
exon number 9
gene id raly
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 38909389 ~ 39081461 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAATCAATGGACGATTTGCAATGACATCTCAGTAGGAAACCTCCCTAAAAGGGCCCCATGAAGAGAGgggaaacaaaaaacaaatattcTTTCAGCTCCAACGTGATAATGGCGAGCGCCAGCGAGATAAAGAGAAGCAAATTTGAAGATGCACTGACGTCTTTCAAGTCCGCCGTGTGGGAACATTTTGGATTCAGAGTTCAATATGATGACGAGGATATTTTGAGGTTCCTAACCAAGATGTCTCTGAAGGTTCAGACCAGCAACGTCACGAACAAGAACGACCCCAAGTCCATCAACTCACGCGTGTTCATCGGTAACCTCAACACAGCGGTGGTGAAGAAGATGGATGTGGAGACCATCTTCTCGAAATATGGCCGCATGCTGGGCTGCTCTGTGCACAAGGGCTACGCCTTTGTCCAGTACGCCAGCGAGAGGCATGCCAGTGGGGCTGTTATTGGGGAAAATGGACGAATGCTGGCGGGACAGACTTTGGACATCAACATGGCGGGGGAACCCAAGCCCAACAGACCCAAAGGGCTGAAGAGGTCTGTCACTGCTCTCTACAGTGGGTACGACTTTGATTATCACTACTACAGAAATGAATTATATGGCAGGCTGTTTGAGTACCGGGGCAGAGTGTCGCCAGTGCCTCGAGTGGTGCCAGTTAAGCGGCCTCGCATGGCCATGCCCCTGGTGCGCCGGGTCAACTCTTTGCCCGTCAAGCTGTTGGCACGCGCTTCAGTCCTCCCCGGCAGCACCATCAAGCAGAAGTTGAACTCCAACGAGCTACAGGATATCAAATCAGAGCTGACTCAGATCAAGTTCAACATTGATGCGCTGCTCGGCCGACTGGAAAGGATCACAGAGGACAAACACATCGCTGCTGagctaCGGAAGTCGGAGGACAACAAGAGTGAGGCGTTTCAGGACGAGTCATGCTCAGACACAGAGGAGCTGGTAGACGAGCCCCATAACAGTGAtgtggaggatggggaggaggacgTCACACAGAATGAGTGTGAAGATGACGACATGGAAAACAACCACCTATCAGAAATGGACTCCAACCTGCAATAAAAGTCAgcggggagaaaaaaaaagattgtCGACTGGAAACTGTTTTAGTACCACAGACTCCACAGGAAGACACTCAAACCATAGGGTGCCGTCAAAACCCGCAACACCGGCCACAGATGAGACGGACAGACTCACAGCTCCACTGTTAAGCAGAGAGGGGGAGCCTCTCTCTTCAAACTGAGAACTCACAGAACGCCACTACACCTCCAAATGACACCACCAGACAATTAATACAGGAATCAAGGACCTGTAAAATTGTTCTATAACTGTCCAAAACAAACGGAACAGGTCAAACTGAGGAATGCTACTAGCTAAGGAAAGGAATTACGTTTTTATACTGTATGCTACAGAACCTTCGAATCACTCCTTGTCCAGTCTCCATCCTGCCCCTGTTCTTCCTTCCTCAGTCTTTTCACAATGTTCCTGTTGTCTTATTTATACGCTGATCTCAAATAGATCAAACTTATTTTTAATGACTGTGCATATTCTTCTGCTTGCATTCTAGAGGCTGCAAGAGATCTTTACAGATGTAAATAAACTATGTTAACTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1655731 lncRNA upstream 221267 38724062 ~ 38724352 (+) True G1446570
TU1655708 lncRNA upstream 243789 38691326 ~ 38701830 (+) True G1446547
TU1655706 lncRNA upstream 244569 38688427 ~ 38701050 (+) False G1446547
TU1655459 lncRNA upstream 268141 38675958 ~ 38677478 (+) True romo1
TU1655434 lncRNA upstream 296583 38648464 ~ 38649036 (+) True G1446302
TU1656047 lncRNA downstream 343 39081804 ~ 39083346 (+) False G1446874
TU1656046 lncRNA downstream 569 39082030 ~ 39083444 (+) True G1446874
TU1656165 lncRNA downstream 5047 39086508 ~ 39086726 (+) True G1446991
TU1656168 lncRNA downstream 7808 39089269 ~ 39089478 (+) True G1446994
TU1656166 lncRNA downstream 8444 39089905 ~ 39091148 (+) True G1446992
NM_001160686.2 mRNA upstream 268138 38676064 ~ 38677481 (+) False romo1
XM_036949855.1 mRNA upstream 398836 38428173 ~ 38546783 (+) False mtss1
XM_036949856.1 mRNA upstream 398836 38428174 ~ 38546783 (+) True mtss1
XM_021568419.2 mRNA upstream 539666 38390184 ~ 38405953 (+) False osgn1
NM_001184778.1 mRNA downstream 97256 39178717 ~ 39183960 (+) True asip1
XR_005036979.1 mRNA downstream 138802 39220263 ~ 39225724 (+) True LOC110493876
XM_021568436.2 mRNA downstream 261530 39342991 ~ 39419811 (+) False pmepa1
XM_021568437.2 mRNA downstream 314579 39396040 ~ 39419811 (+) False pmepa1
XM_036949863.1 mRNA downstream 314725 39396186 ~ 39419811 (+) False pmepa1
TU1655280 other upstream 634755 38309129 ~ 38310864 (+) True G1446149
TU1654008 other upstream 1356892 37585880 ~ 37588727 (+) False rbl1
TU1654009 other upstream 1356892 37586665 ~ 37588727 (+) True rbl1
TU1653937 other upstream 1505207 37434775 ~ 37440412 (+) True chd6
TU1653950 other upstream 1543127 37402197 ~ 37402492 (+) True G1444933
TU1656618 other downstream 261566 39343027 ~ 39426900 (+) True pmepa1
TU1657230 other downstream 718475 39799936 ~ 39800236 (+) True G1447998
TU1658524 other downstream 1868081 40949542 ~ 40968066 (+) True LOC110493893
TU1659644 other downstream 2560662 41642123 ~ 41693718 (+) True LOC110493897
TU1659721 other downstream 2711422 41792883 ~ 41890515 (+) True G1450387

Expression Profile