RNA id: XM_021568436.2


Basic Information

Item Value
RNA id XM_021568436.2
length 2341
RNA type mRNA
GC content 0.51
exon number 4
gene id pmepa1
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 39342991 ~ 39426900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGAATGAGGTGAGCTCAGAAGCCCGTCAGACAGACGGATACAAAGTAGCACAAGCTGTTCACAAACATCGGAGATACTGGAGTACCGACGGCAGGCTGCGGCCCGGGGAGGGGGGGAGGACGAAGGCAACTGTGACCCCAGACCCCTGACTTCCACCCGCAAAGAATTTACCAAGAAAGAAAATATCGTTTTTATGTGATTTCTGCACCGTCGCGCGCTAGAGAAGTGAACTGGAGAGAGATCTTCGAAACGTTTTTCTCCTACATTTCCAGATTTAAATGTTCAACTTCATGGGTCTAATAAACGGTACAGCGGCCATCCAGACCAATGTATCCTGTACATGTAACTGCAAACGCTCGACTTCATTCCAAAGCATGGAGATCAcCCAGTTGGAGTTTGTGCAGATCCTGGTGAtcgtggtggtgatgatggtgatggtggtggtgatcaCATGCCTGCTCAACCACTACCGGCTGTCAGCACGCTCCTTCATCTCCAGGCACAGCCAGGCTCGCAGGCGCCAACTACCGCTGGCCTCAGATGGGAGTCTGTGGTCCTCAGATGGCCCAGGGTCCACCAGTGGAATGAGCGAGCAGCAGGTGTACACCCCCCGGCCCCCGGACCGCGGCCCTTCCTACCTGCAGAGGGAGCGTCTGGCCCGCTTCCAGCCCACCTACCCCTACCTGCCCCATGCCATCATTGACCTGCCGCCCACCATATCGCTGTCGGACGGCGAGGAGCCCCCGCCCTACCAGGGCCCCTGCACCCTGCAGCTTCGCGACCCCGAGCAGCAGCTGGAGCTTAACAGGGAGTCGGTGCGCGCGCCCCCCAACCGCACTGTCTACGACAGCCACCTCCTCGATACCTCCCTGTGCCCGCCGCCCAGCCTCAATGCAGGAGTCAGTGCTACCACTGTAGCCACATCCGCACAGGCCTACTCCAGCCGAGTGGAAGGGGCGCCGCCGACTTATAGTGAGGTTATAGGGCACTACTACCACCCCTCTTCCCTGCCCAGGCACCACCACCAGACTTCCAGTGGCAGTGGGGGCATGGGGGGCGGAGGCGGGTTAGGAAGCCCGGCTCCCTCGCTGCTCCATGGGATACTCCAGCAGGCCCACCTGGGCAGCTTGGAGAGCAGGAACGCACGCAACAAAAAGGAGAAGCAGAAGCCTCGGCAAGTGTGACGGCAGTGTTGGTGTCGGCTGTTTTATTTCTTTCTCTGCACTTCAGCTGAACTGTTGGTGTCAGGCAGGGTTGGGGAGGGGAGGTCGACATGGGGTGGCAGGGGGAGGCAGACACAAAAAAAAGAAATGCCTCCCCTCTGAACTTTACCCCCCCGGTCACCGTCATAACTGACAACCGTCGCCGCTGACTTACTTTGTATAAATATTTACTTGTTCTTTGTTGTCTCCGTGCTTACAGCTTTTTTTCTATACTGACAAATGCGAAAACAAAAAAAGagttacattttttaattttatttttaggtttattttgtttttgtatcCCTTTTGCATCATTTCTAGTCACTTATCTCCTTGTAGTTTATCCTTAGTTGCTCCCAGAGTCTTTTAGAATGACCAGGTCTTCCTTTTTTAGATGTAGATGGCTCTTTTAGTGATCCGCCACCTAACCCCGTCTAGCTTTGTGTGCTGTCCGTGTACAGGCTTGTACAGTGCATTGATAGCAATCTTGTATCAGGTTGCCAGATTCAGGCTCTCACGGGTTGCCAGATCGAAGCTCATATGTTAGCCCTAGTTAGCCTCAGCTCATGACCCAGTTGGCCACAGTGTAGACACCCCCGTCGCTCATCAATCCACATCAAAGGGTGAGTAAGCTTAGCGGTGTGGTGGTCAGCGTTGGCATCCATGGAAACACATGATTGACAGCTGACTGGGTCTGTGTATCAACATGTGCACTGGAATAGAGAGTCCTTTGAGGTCAATTGAGTACAGTACTTTGCCCACTGTAGTGCTTTATGGCTATCTTGCTGTACTATCTGGACCCATCTGAGTTTAGTACTGTACTTTGGGTCTTGTCCAGTCGATTTTAGTACTGTCTTTGGGTCTTTGGACAGACAAGTTCAGGAGTTCCCGTGTGCAAATGCTCTTCATTTTTTTCTGGATCTTTTTTAAAGAGATGTTTGCACAAGATTCAAGACTGTTTATCTGGAGAAAAAGAAAAGAAGTCTGCAATATGTATCAtaagagaggagagtgtgagcaGGGGTATTTTTGTAAACATGGATTCtaaagagaaaaatacatttttttgttttattttttgtctGCTCTAGAAATAAAAGTGAAAACGGTCATCTGTTGGGGTGCCAACTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1656196 lncRNA upstream 220023 39122767 ~ 39122968 (+) True G1447017
TU1656166 lncRNA upstream 251843 39089905 ~ 39091148 (+) True G1446992
TU1656168 lncRNA upstream 253513 39089269 ~ 39089478 (+) True G1446994
TU1656165 lncRNA upstream 256265 39086508 ~ 39086726 (+) True G1446991
TU1656046 lncRNA upstream 259547 39082030 ~ 39083444 (+) True G1446874
TU1656671 lncRNA downstream 10165 39429976 ~ 39434546 (+) True G1447480
TU1656761 lncRNA downstream 187158 39606969 ~ 39607548 (+) True G1447563
TU1656753 lncRNA downstream 277407 39697218 ~ 39717880 (+) False G1447558
TU1656754 lncRNA downstream 277407 39697218 ~ 39717880 (+) False G1447558
TU1656755 lncRNA downstream 277407 39697218 ~ 39717880 (+) False G1447558
XR_005036979.1 mRNA upstream 117267 39220263 ~ 39225724 (+) True LOC110493876
NM_001184778.1 mRNA upstream 159031 39178717 ~ 39183960 (+) True asip1
XM_036949860.1 mRNA upstream 261530 38945618 ~ 39081461 (+) False raly
XM_036949864.1 mRNA downstream 80885 39500696 ~ 39518437 (+) False ccndbp1
XM_021568442.2 mRNA downstream 80885 39500696 ~ 39521498 (+) True ccndbp1
XM_021568444.2 mRNA downstream 232053 39651864 ~ 39696026 (+) True LOC110493884
XM_021568449.2 mRNA downstream 486462 39906273 ~ 39917797 (+) True LOC110493887
XM_036949870.1 mRNA downstream 528815 39948626 ~ 40269835 (+) False LOC110493888
TU1655280 other upstream 1032127 38309129 ~ 38310864 (+) True G1446149
TU1654008 other upstream 1754264 37585880 ~ 37588727 (+) False rbl1
TU1654009 other upstream 1754264 37586665 ~ 37588727 (+) True rbl1
TU1653937 other upstream 1902579 37434775 ~ 37440412 (+) True chd6
TU1653950 other upstream 1940499 37402197 ~ 37402492 (+) True G1444933
TU1657230 other downstream 380125 39799936 ~ 39800236 (+) True G1447998
TU1658524 other downstream 1529731 40949542 ~ 40968066 (+) True LOC110493893
TU1659644 other downstream 2222312 41642123 ~ 41693718 (+) True LOC110493897
TU1659721 other downstream 2373072 41792883 ~ 41890515 (+) True G1450387
TU1661375 other downstream 3908775 43328586 ~ 43459832 (+) False G1451948

Expression Profile