RNA id: XM_036949876.1


Basic Information

Item Value
RNA id XM_036949876.1
length 2592
RNA type mRNA
GC content 0.52
exon number 17
gene id LOC110493889
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 40312876 ~ 40367740 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTATTAGTCTTATTAATTTATTAGTCATCATAAAGACATGAGTACATACATCTGGTTGACATGGTATCATCACATAGGCATAATGCAACATCTTCTAATAACATTATAATAAATACATTGACTACTGAGCATGTCACTAATAATGAGTTGTATCAATTGAAAATGTAGACACTGCACAAAACAAAACTACACAAAAGTGAATATAATTCGATATTATTTCGTAATCCCAAACATGCCATCGGAGTATTACTGGTTAAATAGTTCAGACGAGTTCGCAAATGTGTTTTGGCCTGACTACTTTCACAAGCAAAGTTCTGAAGAGCTAGCTACTAAGATTCTGCAGTATGTCAACGTTTACAAATGCCCTTCCACATATGGCTACTTCTCAATGACAAACATTGCCTAGAACAACAACTAAACTGGCGCGTGCGCAATACCAAGGCCCGCGTCCCCGAAACAAGATGGCGGAGAATTTGGGGAGGAAGAGGCGGAGGCAGGTCCGGATTGAATAGAGCAAAGGCTATACAAGGTTCCCAACAAACCTCTATAAGGACAggacagatgaggagagatgtCAAGTGAGAATCACGGAACAGTGAAGGGGGACACTGCTTTGGTGATGTCTCCAACAGGCTCTGCCACACAGGGGTCTCCGGTCTCACCTTCAACTAGCAAGCCCATGACAGAGTTGCCAAACGAGCTCGTCCAGGCCGGCTGGTCGAAATGCTGGAGCAAGCGGGAGAATCGGCCCTACTGGTTCAACCGCTGCACCAATCAGTCGATGTGGGAGATGCCAGTCCTGGGGCAACATGATGTCATTTCCGACCCGCTAGGTTTGAATGCTGCCTCGGTGGAGGGGGCAGGTGATGACGGTGTGGGCAACAGGCAGCGCAAGAGACGCCTGTCGGAGGATGCCGCCCAGGGTGGTCTTAACAGCTTCAAGAGGCCCAAGATTGAGATTGGTATACCTGTAACCCCAACAACCCCCACAGTGCCCATCTCACCCGTTACCCCCAGGGCAAAGCCGTGGAACTCTACCACAGGCACAGAGGACAAGCCAGGTCAGCCGGCATCGGCCCTATACCGTCCCACCATAATATACTGGGACCTGGACATTCAGACTAACGCAGTGATCAGAGAGCGAGCCCCCGCCAACCATCTACCTCCCCACCCGGAGATTGAGCTCCAACGCGCCCAGCTCACCACCAAGCTACGGCAGCACTACCAAGAGCTCTGCTACCAACGAGAAGGTATCGAGCCCCCACGGGAGTCTTTCAACCGCTGGCTGCTGGAGCGCAAGGTGCTGGACAAAGGGCCTGACCACCTACTGCCCAGCGATTGTGACCCCATCATCTCCCGGTCCATGTTCAGAGAGGTCATGAACGACATCCCCATCAGGTTGTCCCGCATCAAGTACAAAGAGGAGGCCCGAAAGCTCTTATTCAAATACGCTGAAGCTGCCAAGAAAATGATTGACTCGAGAAACGCCACACCAGACAGCCGGAAGGTTGTGAAATGGAATGCGGAGGACACCATAAACTGGCTACGGAGAGACCACTCAGCCAGCAAAGAAGACTACAtggtatatGATCGTCTGGAGCACTTGCGGAAACAGTGTGGTCCCCATGTAACGGCAGTAGCCAAAGACTCCGTGGAGGGAATTTGTACAAAGATCTACCACATCTCAGTAGAGTACGTGCGACGTATTCGCCAGGCCCACCAGACCCTGCTGAAGGACTGCAACTTCATGGAGGCAGCCGAGGTGCAGGACAGGCTGGTATACTGCTACCCCGTCCGGCTGGCTCTGCCCTCACCGAACCAGCCCCGCGTTGAGCTGCACTTTGAGAATGACATCTCCTGCCTACGCTACAAGGGAGAGATGGTCAAGGTCAACCGCGGCTACTTCGCCAAGCTGGAGCTCTTATACCGATACAGCTGCATCGATGATCCCAGGTTTGAAAAGTTCCTGTCACGAATATGGTGCCTTATCAAGAGATACCAGGTGATGTTTGGCGCTGGGGTGAATGAGGGGATGGGCTTACAGGGGGCCCTCCCTGTGCCTGTCTTCGAGGTACTCAACAAACAGTTTGGGGTGAGCTTTGAGTGTTTCGCCTCGCCGCTCAACTCCTACTTCAAGCAGTTCTGCTCGGCTTTCCCTGACACCGACGGCTTCTTTGGGTCCAGGGGGCCCTTTCTGAACTTCTCACCGGCTAGTGGCTCCTTCGAGGCCAACCCTCCCTTCTGTGAGGAGCTGATGGATGCCATGGTGACACACTTTGAGGAACTACTGGAGAAGTCCAGTGAGCTCCTATCCTTCATCATATTTGTCCCGGAGTGGCGAGATCCGCTGACCCCGGCCCTCAACCGCATGGAGACCAGCGCCTTCCTCCGCCATCATATGTCGGTGCCCGCCTTTGAGCACGAGTACCGCAGCGGCTCGCAGCACATCTGCAAGAATGCTCACTGATCCAGGTCTTAAGGATTCGACGGGTTTCCCCTATGTAACACAGACCGCGGGGACATTTCAACATGTAAAGAACATTGGTGGACATGCAGGGAGGAGATGTACTACAAGGCAGTTCACGGCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1657609 lncRNA upstream 9572 40302956 ~ 40303304 (+) True G1448349
TU1657588 lncRNA upstream 32715 40279944 ~ 40280161 (+) True G1448330
TU1657587 lncRNA upstream 33028 40279508 ~ 40279848 (+) True G1448329
TU1657586 lncRNA upstream 33424 40279242 ~ 40279452 (+) True G1448328
TU1657585 lncRNA upstream 34192 40278165 ~ 40278684 (+) True G1448327
TU1657671 lncRNA downstream 67854 40429569 ~ 40429816 (+) True G1448405
TU1657672 lncRNA downstream 69052 40430767 ~ 40430995 (+) True G1448406
TU1657574 lncRNA downstream 86885 40448600 ~ 40448927 (+) True LOC110493184
TU1657712 lncRNA downstream 153979 40515694 ~ 40522238 (+) True G1448441
TU1658204 lncRNA downstream 193510 40555225 ~ 40555937 (+) True G1448906
XM_036949870.1 mRNA upstream 43041 39948626 ~ 40269835 (+) False LOC110493888
XM_021568451.2 mRNA upstream 43041 39948627 ~ 40269835 (+) False LOC110493888
XM_036949871.1 mRNA upstream 47621 40086374 ~ 40265255 (+) True LOC110493888
XM_021568449.2 mRNA upstream 395079 39906273 ~ 39917797 (+) True LOC110493887
XM_021568444.2 mRNA upstream 616850 39651864 ~ 39696026 (+) True LOC110493884
XM_036949878.1 mRNA downstream 6042 40367757 ~ 40378949 (+) True LOC118940425
XM_036949880.1 mRNA downstream 21470 40383185 ~ 40385420 (+) False LOC118940426
XM_036949881.1 mRNA downstream 21498 40383213 ~ 40385420 (+) False LOC118940426
XM_036949879.1 mRNA downstream 21726 40383441 ~ 40385420 (+) True LOC118940426
XM_036949883.1 mRNA downstream 86812 40448527 ~ 40474689 (+) False LOC110493184
TU1657230 other upstream 512640 39799936 ~ 39800236 (+) True G1447998
TU1656618 other upstream 885976 39343027 ~ 39426900 (+) True pmepa1
TU1655280 other upstream 2002012 38309129 ~ 38310864 (+) True G1446149
TU1654008 other upstream 2724149 37585880 ~ 37588727 (+) False rbl1
TU1658524 other downstream 587827 40949542 ~ 40968066 (+) True LOC110493893
TU1659644 other downstream 1280408 41642123 ~ 41693718 (+) True LOC110493897
TU1659721 other downstream 1431168 41792883 ~ 41890515 (+) True G1450387
TU1661375 other downstream 2966871 43328586 ~ 43459832 (+) False G1451948
TU1661383 other downstream 2967384 43329099 ~ 43409816 (+) True G1451956

Expression Profile