RNA id: XM_036949897.1


Basic Information

Item Value
RNA id XM_036949897.1
length 6493
RNA type mRNA
GC content 0.54
exon number 30
gene id LOC110493907
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 42329565 ~ 42407845 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTATAGCGTCTGTGACAGCACGGGCAGTGCCATTGAGACTATCTCTGctcccaactcataggaatccccacccagttgactactttaaaatgattGAAGCCCGCAATGGCAATTTTCATCCTAAAATGTGTTTTATCCAAGGATGattcctctatctatctatctctatgttcAGTTGCCAGTAGCTACTGAGGCTAGCCGTCAACCGGATGACGATTCGACGATTGACGTCGAATGTATGCTTGTCATTGGATATGAATTTTCTTCAAAGATGGTTCTGTAATATCCTCGTTAGTGTACAGTTTGCTGAGAAACGGACGGTTGATATGACAGTATTTCTTTCCGACACAGGTAACAATTGGACCCAGTAGAAGCAAAAGCCACCGCCATGTATTCGGAATGGAGGTCTCTGCACCTGGTGGTGCAGAGCGACCTAGGCCATCTGAGTGTCCTTCACTCGTACCCTCCGGTGGTGGGGCGTGACGTGGCCAATGCAGTGGTTAGACCTCTGGGGGTGACCCTGGGCACCCCGTCCACCGATAGCCTGCTCAAGACCGACAAAGAGGTGAAGTGGACAATGGAGGTGCTGTGCTACGGCCTGACCCTGCCTTTGGACGGGGACACGGTTAAGCTGTGCGTGGACGTCTACACGGACTGGATCATGGCGCTGGTCGCTCCGCGTGACTCCATCCCCCAGCCAATCGCCAAGGAGCCCAACCTCTACGTGCAGACCATCCTCAAACACCTCCACAACCTCTTCCTGCCCAGgCCGGAGCATTACAGCCCCATGCACTTCCGGCTGTGCCAACAGGTGCTGACGGCGGTGCAAAAGCTGGCCAGAGAATCGGGCGGCGGCATGGCCCGGGAGACCTGGGAGGTGCTGCTGCTCTTCCTGCTGCGAATCAACGACACCCTGCTGGCCCCGCCCACAGTTGGAGgtgggATAGCGGAGAAGCTGGCTGAGAAGCTGATCAGCGTGCTGTTTGAGGTGTGGTTCCTGGCCTGCATGCGCTGCTTCCCCACACCGCCCTACTGGAAGACGGCCAGGGAGATGCTGGCCAACTGGAGGCACCACCCCCCCGTGGTGGAGCAGTGGAGCAAGGTCATCGCCGCCCTCACCTCCAGACTGTTGCGGTTCACCTACGGTCCATCCTTCCCTCCGTTCAAAGTCCCAGATGAGGACGCCAACATGATCCCTACTGAGATGGACAACGACTGTGTGGCTCAGACCTGGTTCCGTTTTCTTCACATGCTGAGTAACCCGGTGGACCTTAGCAACCCGCTGACGGTCAGCTCTACGCCAAAGTTCCAGGAGCAGCTGCTGGGGGTGAGCGGCGTGCCCCAGGAGGTGATCCAGCAGCATCCCTGTCTCAATCAGCTGCCCCAGATCTTCTTCAGGGCCATGCGGGGGGTCAGCTGCCTGGTGGATGCCTTCCTGGgtgTCTCCCGTCCCCGGTCGGACAGTGCCCCGCCCACccctgtcaacagactgagcatGCCGCCGCCCACCACTAACACCACACCCCCTCACAGCCGTCGCCACAAACCCACAGGGGTCACAAAGACGGCCAGTAAAACCTCAACGGCAAGCATAACACACCAACCCAAAGTGTCCCACCAGCCGTCCTCCACCTCCCCCCTGTCCAGCCCCAACCAGACCAGCTCGGAGCCCCGGCCGCTGCCTGCCCCCACCAGGCCCAAGGTCAACAGTGTCCTCAACCTTTTTGGCCAGTGGCTTTTTGACGCCGCGCTGGTGCACTGCAAGCTCCACGCAGGCCTGAGCCGGGACAACAGCATGACTGcccTGGCCACTCAGACAGGTGTGGAGCTGAGGAGGAAGGGCTCCCAGATGTCCACAGATACCATGGTGTCCAATCCCATGTTCGACGCCAACGAGTTCCCCGACAACTACGAGTCGGGCCGGGCCGAGGCCTGTGGAACCCTCTGTAGGATCTTCTGCAGCAAGAAGACTGGCGAGGAGATACTGCCCGTTTATCTGTCAAGGTTCTACATGGTTCTGATCCAGGGCCTCCAGATCTCCGACTACATCTGCCGACCGGTGCTGGCCAGCATCATCCTCAACTCCTCAGCCCTCTTTTGCTCCGATATTAAGGGCATCAATGTGGTGGTCCCCTACTTCATCTCAGCCCTGGAGAACGTCCTCCCTGACCGAGAGCTGTCAAAGTTTAAGACCTACGTGAACCCCACTGACCTAAGGAGAGCCTCCATTAACATCCTGTTGTCCATGCTGCCTCTGCCACACCACTTTGGCAAGGTCAAGTCAGAGGTGCTCTTGGAGGGCAAGTTTAGCAATGATGACAACTCGCTGCACGACAAGGCCGTCACCTTCCTCTCCTTCAAGCTGCGATTGGTCAACATCCTAATAGGAGCGCTACAGACGGAGACTGACCCCACCAATACGCAGATGATCCTGGGTGCCATGCTCAACATTGTCCAAGACTCTGCTCTCCTGGAGTCCATCGGTGCCCAAGCGGAGGTGGGCAGTGTGGATGGCAGCCATGCGCTGGCTAAAAGCCACAGCAGGAACAACAGTGGCATCAGCAACGCCAGCGGGGGCAGCTCTGAGGCCACCACCCCCGACAGCGAGAGGCCCGCCCAGGCCCTCCTCAGAGACTACGATACAGCCGCCGGCCTACTGATCCGCAGCATCCACCTGGTCACCCAGAGGCTCAACTCCCAGTGGAGGCCCGACATGAGCATCTCCCTGGCCGCCCTGGAGCTGCTGGCCGGCTTAGCCAAGGTGAGGGCGAGTGTGGAGTCTGCGGACCGTAAACGTGCAGTAAGCTCGGTGTGCAGTTATATCGTGTATCAGTGCAGCCGGCCGGCCCCCCTCCACTCCCGAGACCTGCACTCTATGATCGTGGCGGCCTTccagtgcctgtgtgtgtggctgacagAGCACCCCGACATGCTCAATGAAAAGGACTGTTTGATAGAGGTGCTGGAGATCGTGGAGCTGGGAATATCGGGCAGCAAGTCTAAGACCAGTGACCAGGAAGTGCGGTACAAAGGGGACAAGGAGCACAATCCGGCCTCCATGAGGGTGAAGGATGCTGCCGAGGCCACCCTGTCATGCATAATGCAGGTCCTGGGGGCGTTCCCGTCGCCCAGTGGCCCCGCCTCCCCCTGCAGCCTGCTGAACGAGGACACCCTGATCAAGTACTCCAGGCTGACCTCTACCAGCTGCAAGAACTTCCGCTACTTTGTCCTAGACAACTCTGTCATCCTGGCCATGCTGGAGCAGCCGCTGGGCAACGAACAGAatccCTGTCCATCCGTGACCATGTTGATAAGGGGGATGTCTGGGAGACACGCCTGGACCATGCAGCTCTTCCACCAACCCAGGGGGGCCCGTGCCAGCCAGAAGGTGTTTATCCCAGAGAGTCGGCCCACTCCCAAAAATGATGTGGGGATCCGGTTGAACGTCAAACACAGACCCTTCCCAGAAGAAGTGGACAAAATTCCATTTGTGAAAGCAGACCTGAGCATTCCGGACCTACACGATATCGTAGATAAGGAGCTGGAGATGCAGCACGACAAGCTGCGAGGTGTGATGGCCAAGCAGATCGAGTACGAGACGATGCTGGAGCACGGCAGCGAGGAGCGCTGGAGCAGCAAGAGCTTCCCAGACGTGCTGACGGACTGCAAGCCCCCGACTCCCTCGCAGGAGTTCCAGACGGCCCGCCTCTTCCTGTCGCACTTTGGCTTCCTGTCACTGGAGGCACTCAAGGAGCCCGGCAACAGTCGCCTACCTCCCCACCTGATTGCACTGGACTCTGGGTTGCCGGGCTTCTTTGACGACATGAGCTACCTGGACCTGCTGCCCTGCCGGCCCTGCGACACAGTCTTCCTCTTCTACATGAAGGCCGGCCAGAAGAGCAGCCATGAGATCCTGAGAAATGTGGAGTCGAGCGCCAACGTGCAGCATCACTTTCTGGAGTTCCTGATGTCGCTGGGCTGGCCCGTGGAGGTGGGGCAGCACCCGGGCTGGACAGGCAGCGTCTACACTAGCTGGTCcatcaacaaccacaacaacaatgGAGACAGCATCCAaccagATGATACTATCACCCTGGGAGACACGGGCGGGGGCGTGTTCAATGGAGAGAAGCGGGTGCTGTACTACGCCGACGCCCTGACCGAGATCGCCTTTGTCGTTCCCTCGCTCACAGACTCCTCCGCTGAGTCATCGGAAAGCAGTTTCCCCACAGTGGACTCTGACTCTCAGATGGAACTGCTACCCAACCTGCTGAAACAGTCCAACCTCACACTGGAGCTCTTCCCCAACCACTCTGACAACGTGGCCCCTGCACAGAGGAGTCCTACGGTGAAGTCTAAGAAGATGCCTCCCGGCAGGACCATCCCTCCAATGGGACCAGAGACCAAAGTACTGGTGGTCTGGGTGGAGCGCTACGATGATATCGAGAACTTTCCCCTGGCTGACCTGCTAGTAGAGACGAGCACTGGAGTGGAAACCACGGCCAACAGTAGCACCTCAACAAGACCCACGACGTCCGGTCAGGATGTGCAGGTGATCTTCATCCACCCTCTGAAGACGGGCCTGTTCCGGATCCGCCTGCATGGGGCCCTGGGAAAGTTCAGCATGGTCGTCCCCCTGGTGGATGGCATGGTAGTCAGCAGGAGGTCACTAGGGTTCCTGGTAAGGCAGACGGTGATCAACGCGTGCCGGCGGAAGCGGCTGGAGAGTGACTCGTACAACCCTCCACACGTGCGTCGGAAACAGAAGATCGCCGAGGTGGTGAACCGCTACCGCAACAAGCAGCTGGAGCCCGAGTTCTATACCGCGCTCTTCCAGGAGGTCGGCGTGAGCAGCCTCGACCGTGACCCCACCCCCGATGAACTTTGAACTTTCACCTCCCTCCCCACAAGGACTGCAAAGATTCTTTATATTTATAAaatgtttctcttcttctttactTTGTTTATTTATATTATCAGCACTTGGTGGCCACGTTCCAAGTCGACAATTTAGTTTTTTCCCACCCCGCGCTGCAACACTGCTCATCTGCAACTTACTCTAGTTCTACCCAAGCCTTGTAGGACTCTTTGATGGTGTCTGGTTGTGGCACTAACCTCACCTGGCTGCGAGGCGTCAGGCTTGGGCAAAGGAAGCACCTTTAGCTGTGAGGAGAGGGTATATGCTTAAACAGCTGACTATAAACTTGTGACACGGCACGTGGCAAAGTGATTGCTGTCGGCGCTCAATTCAAAATGGCTTCCACTCTGTGGCTGTGACTAGTTCCCACAGCCGTCTCACTGTGGTTTTTCAAGTCCGATTCTTCTGTTTGCTTTTCTATGAAATGCATCAGTCTGTCCATTTCCCATATTTAACAGTTTTTTTGTTCATTATGTTGGTCTGGAATGGAAAAGAGAGGTCAAAACATCCAACTTTTTCATTGATGAAAGAACGTCACTACAAAAACTAATATTGACAAAACTCAAATCTCACTTCAGTAAATTGTCATTTTTTACTTTTGGTTCTCTCTTCCCACATACATAATTGTACCAGTTAGCGAAAATGTATAGTTCTGCTTTTACTTTAAATCTCAGGTAGTTTGAGTTTTTTATATTCATTGGTATCTGGGTTGTTTTCTTTAGGCacgaaaatgaaaaaaaatatatactaaaaTAGGGAGAGACTAGCGGAACTTGTATGTTTTTCCATTGCAAACCATTTTGCTACTGTGCCCTAATGAATGCGACCTTGGTAATGCACTCAATGCACTCCCAACCAACTGTGACTAGAGTCTGGTTTCAATAATGGACTTTTTTGGCATAGAGAAAATACGCCACTGCCTACGCCACTACTTTATCTGcttgaataaaatacaaaatattagCTAGCAAGATGAAGATCACAGAGGTCATTTTTATGAGTGCATTTCGCAAGTGGCTAGTTTGCATCAACTACCTTAATTGAAACCCCTGCAAAGGTGTTGCCTGCCAACTGGTTTTGAATTGCAACGTTCTGGCATGTCTGTCTCGTCATTTTTTGGGAGAGTCCCCAGATATGGTTTATTTTACTTATCGACGTAAGCAGTGACGTACAGTAGTTATTCTATCCCAAAATATTCCGTAATTTAAAACCAGACCCTAGTCACTGTGTCGCCACGGATCGGTTTTTCGAGACTAACAAACTGACCTTGTTTTGGGCTTTTAGTGCACTCTAAAACGTGTGGCATTTCACATTCACTGAAGCTGATGGTCGTCTGGATATGGAACTGCAGGAAGTCAAAATCACTGATGGATTATACTTTTTTTGGTATGGATTTGAAAATGAAATCCTTTATCGGTTTGTTTCTTCCCGTGTCAGATAAACATGCAAAATATGTAtacatataaaatacattttgattggtGATATAAAAGGTGAGTTTCAGTTGATTGTTTGTTATTCACAGTTGGAAATATGATGATCTTGGATGATTGATAAAAATGATTTGTCACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1660397 lncRNA upstream 190724 42137457 ~ 42138842 (+) True G1451028
TU1660365 lncRNA upstream 216616 42112724 ~ 42112950 (+) True G1450997
TU1660233 lncRNA upstream 301477 42027717 ~ 42028089 (+) True G1450872
TU1660219 lncRNA upstream 311331 42018016 ~ 42018235 (+) True G1450858
TU1660218 lncRNA upstream 312117 42017212 ~ 42017449 (+) True G1450857
TU1660551 lncRNA downstream 2885 42410730 ~ 42411333 (+) True G1451179
TU1660574 lncRNA downstream 6231 42414076 ~ 42414286 (+) True G1451200
TU1660575 lncRNA downstream 7083 42414928 ~ 42415255 (+) True G1451201
TU1660584 lncRNA downstream 17788 42425633 ~ 42425865 (+) True G1451210
TU1660929 lncRNA downstream 134244 42542089 ~ 42542319 (+) True G1451534
XM_021568493.2 mRNA upstream 220824 42029990 ~ 42108742 (+) False LOC110493904
XM_021568494.2 mRNA upstream 220825 42029991 ~ 42108741 (+) True LOC110493904
XM_036949891.1 mRNA upstream 441885 41822362 ~ 41887681 (+) True LOC110493901
XM_021568477.2 mRNA upstream 623386 41641874 ~ 41706180 (+) False LOC110493897
XM_021568463.2 mRNA upstream 781852 41530177 ~ 41547714 (+) False LOC110493894
XM_036949899.1 mRNA downstream 27483 42435328 ~ 42516956 (+) False LOC110493908
XM_036949900.1 mRNA downstream 27483 42435328 ~ 42516956 (+) False LOC110493908
XM_036949901.1 mRNA downstream 27483 42435328 ~ 42516956 (+) False LOC110493908
XM_036949902.1 mRNA downstream 27483 42435328 ~ 42516956 (+) True LOC110493908
XM_036949903.1 mRNA downstream 120904 42528749 ~ 42532546 (+) False LOC110493909
TU1659721 other upstream 439051 41792883 ~ 41890515 (+) True G1450387
TU1659644 other upstream 635848 41642123 ~ 41693718 (+) True LOC110493897
TU1658524 other upstream 1361500 40949542 ~ 40968066 (+) True LOC110493893
TU1657230 other upstream 2529330 39799936 ~ 39800236 (+) True G1447998
TU1656618 other upstream 2902666 39343027 ~ 39426900 (+) True pmepa1
TU1661375 other downstream 920741 43328586 ~ 43459832 (+) False G1451948
TU1661383 other downstream 921254 43329099 ~ 43409816 (+) True G1451956
TU1661373 other downstream 925670 43333515 ~ 43428562 (+) False G1451948
TU1661374 other downstream 925670 43333515 ~ 43436740 (+) True G1451948
TU1661834 other downstream 1074415 43482260 ~ 43483693 (+) True G1452359

Expression Profile