RNA id: XM_036949900.1


Basic Information

Item Value
RNA id XM_036949900.1
length 5682
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC110493908
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 42435328 ~ 42516956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaggcagggtagcctcAGCAACGTGCACAGTCAGGGTCTCCGGCGCTCTACGAATCATTATATACGCCCAGCACTGCGATGATGTTACCTGGTAAAGGGCGGAAAAAATCTCCAAGCTCCACATGACAGTATTTCGGCAGAATGGTCAAGAAATCCGGCAACGGTGGTGTTTACCCGGGTCCAGCTGCGGAGAAAAAACTAAAAGTAGGCTTTGTCGGGATAGAACCTGGGGCTACGGACTCAAACAAAGATGCGGCGCTGCTCATAGCAGGTGCGGACGCCAAGGCAACAGCACGGGGCAGCATCCTTAGCAAACCGAGATCCAGCCTCTCCGGCAAACCCAAGCCTCCAAAGAGAACTGTATTCTACAGAAGACTGCAGAATTTTCTTTACAATGTTTTGGAGAGACCAAGAGGATGGGCATTCATTTACCACGCATACGTTTTTCTGCTGGTCTTCTcctgtctggtcctctctgtGTTTTCCACCATTAAGGAGTATGAGAAGAGCTCTGAAGATGCCTTGTACATACTGGAAATAGTCACCATCGTAGTGTTTGGTGTGGAGTACATAGTGAGGATATGGGCCGCCGGATGCTGCTGCAGATACAGAGGATGGAGTGGCCGTCTGAAATTTTCCCGCAAGCCCTTCTGTGTGATCGACGTCATGGTTCTGATTGCGTCCATCTCTGTGCTGGCGGCTGGAACCCAGGGGAATGTCTTTGCTACTTCTGCCATCAGGAGTTTGAGGTTCCTGCAGATCTTGCGCATGATCCGGATGGACCGCCGTGGAGGCACCTGGAAACTCCTGGGATCTGTTGTTTACGCTCACAGCAAGGAGCTGATCACAGCGTGGTACATTGGCTTCCTCTGCCTCATCCTGGCGTCCTTCCTGGTTTATCTGGCAGAGAAAGAGGACAACGACCAGTTTGAGACCTACGCAGACGCGCTGTGGTGGGGCCTGATCACCCTGACTACCATTGGGTATGGAGACAAGTTTCCCATAACGTGGAACGGGCGTCTTCTGGCCGCAACCTTCACCTTGATTGGAGTGTCTTTCTTTGCACTTCCAGCAGGGATCTTGGGCTCCGGCTTTGCCTTGAAGGTCCAGGAGCAACATCGACAAAAACACTTTGAGAAGCGTCGGAATCCTGCGGCAGGGCTTATTCAGgccGCGTGGCGCTTCTACGCCACCAATCTCACCCGGCCAGACCTGGAGTCGACGTGGGATTATTACGAGCGCACCGTGTCCGTGCCGATGTACAGACTGATCCCGCCACTAAATCAACTGGATCTACTAAGAAATCTGAAGAGCAAGTCGGGACTGTCATTCAGGAAGGAACCCCAACCGGAGTCCTCCCCAAGTCAGAAGGTCAGCCTGAAGGAGCGTGTTTTCTCCAGTCCCCGGAGCTCAGGGACCAAAGGGAAAGGTTCACCCCAGGGCCCCAGTGGACAAGGCAGCCAGGGTCAAGGCCAAGGCCAACCCATTCACAGGTCCCCCAGCGTCGACAACAGCAATGAAGACAGCCCCAACAAAGTGCCCAAGAGCTGGAGTTTCGGAGAACGCAGCCGGGCACGTCAAGCCTTCCGCATTAAGGGCGCCGCCTCGCGCCAAAACTCGGAAGTGCTGATTGAGATGCAGGATGAAGAATTCAGACAGAAGAGCTCACCAGAAGCCAGCCTCCCTGGAGAGGACATAGCAGACGACAATAAGAGCTGCCACTGTGAGTTTGTCCCTCAGGACCTAACTCCCGGACTCAAGGTCACTATCAGGTCCATTTGCATTATGAGGTTCATGGTCTCCAAGAGGAAGTTCAAAGAGAGCCTGCGGCCGTATGACGTGATGGATGTCATAGAGCAGTATTCAGCCGGCCACTTGGACATGCTGGCCCGCATCAAAAATCTCCAGTCCAGAGTTGACCAGATTGTTGGTCGAGGTACTCCGATCACAGATAAAGACCGTCCCAAAGGAACCACAGACGGGGGGGTTGAGGAGGACCCAAGCATGATGGGGCGTTTGGGGAAAGTGGAGAAAAAGGTCATGTCAATGGAAAGAAAGCTGGACTTCTTGGTGAACATCTACATCCAGCGCATGGGCATCCCCCAGTCGGAGACTGACGCCTACTTTGGGTCCAAAGAGCCCGACCCGGCACCGCCCTACCACAGCCCAGTGGACCACATGGCGAAGAGTGGCTCCATCACCAAAATTATCCGCTCCAACAGCTCGGCCGGACAGAAGAACTTTGACCCCCCACCAGCCTGTTCCGGCCTAGGGGGACACtgccccccctccacctcctggcAGCAGCACCCCGTCAGCGAGGTACACCAGCGCAGCCAGGACAACTCCCCCTCCCCCGTAGGCGATCCCTCCCTGGTCCGCATCCCTCCTCCACCGGCCCATGAGCGCTCATCTGGAGGCCACAGTGGGAGCAATCGGGGGTCCCACCGCAACAGCGGTGGTGGCAGTggtgaggggtatagagagggcaAGGCAGACAGCGACACGTCCATCTCCATCCCCTCGGTGGACCACGAGGAACTCGAGCGCTCGTTCAGCGGCTTCAGCATCTCCCAGTCCAAGGAAAATCTGGACTTCCTGAACAACAGCTACTTCAGTGTTGTAGCCCGCTGCGCCAAAGTAAGGCCCTACATCGCAGAAGGTGAATCCGACACTGACTCTGACCTCTGTGCCCCCTCGCCCCACTCTGCCACCGGGGAAGGCGCTTacgggggcagagggtggtcagGATCCAAGTAGGCCGAAACTGGAACTGCTCATATAAATGGTCACTCTGCCTTAGAATTCAGAGTTGACTGCCCACAATGCTAGGTGTTACCACCATTGGTACTTGTGAGAACTGAAAAACCTGGCTCCTCTTGAATGACGGCAGCAGAGAGTGAGAAAAAAGGTTATCAGACCACGCTCCAACGGTTTTTGCTGAGAAAGCGCCTGTAGTTTTTCATGCTGGGAATGTTTGTGGCAACTTGACTTAAAGCACATACATTTGTTCTCAAGTATTCGCACACTCATTAACTCAAGGTTAAGTCTGTCAGTGATTGTTTTGATCTTTTACTCGGGAACGGAATGCATATTAATTGCCAACCTTATATTATCATTGAGATGGTTACAGATTTAAAGAAGGCActtgaatttgttcaaaactatgACATCCATATTCTTTTGTTGCATTTGATAGTTTTTTGTGGCATAAGAGATTCCCAATTTCATCTAACTTGTCATGTATTGTATTTACATCCCAAATTACTTAGTTATTTACATTGGATAACAGATTACATGTTTTGCTTTATGGTTGATCAGCTAAATATGTTTATTTCAAAGGAATGTAATATGATAGTCAACATTATGGCTCGTGTCCATAAACCCTATTGGATATAGGGACATGTGATAACcagttctatgtgcactattttaGCAGTAATTGTGGTACACAACCCTTTAAGGCTTCTTTGCATAAATGTGCACAAGGCACAAACGCAATGACGATGTTCACATTACACTACTCACTATAGAGATTGTACATATTCGATACCCACAATATTATATTTGTGATATCCACAGAGATGCTTTCTTTGGCAAGTGGTGGAGTACAACCAATATTGGGACATTTTGTTTGGTCTTTATGATCTGTAAAGATGTattttattgattttttttatatcacataattgtaattatatttatttgtttattcatTTGCTGTAAGACAAATGTGTGAGGTTTTTGGAAAACAAGCTGCATTTGCAAGCACAAACACCTTGCAGCTGTTTGCCAAATAGTATTCAAATGCACTATTTGCCAACTACATCCATAATATGACACAACTGGAAACATTAACAGAATTCACTAACATAAAATTACAACAGCTATAGTTAGATGAACGCTTTATATTTTGTTGATTGCATCACATTTTTATGAAAGTATATAATATCATTTCATGATGATAGAAATGTTAACAAAATATTCAGGCATGTTATTTAATTAACATTTCATATTTTTTGCAAAAGCCTTACTCACAGGCTTTGACATGATATTTGATTTAAGCCAAATGGGGGCATTTAACAAACTGTTTTATCCTTTGAAAAGCCCCTTTATCCATTGATATTTCaacatataatttaaaaaaataataattgtgttcCGTTATTGTCCTTTCCAAGGCAAAAACATTTAAgaatgtatgtgtaatgttttacttttactttaTGATTATTTTAGTCAAACTTCGCTCTGCCAATATTTTTGCTGCTGTTTTCCCTCCATTTTCTCCAGTGCCGATCAGAATATCTAGACAAATATTGATGGCAAAGGTACACACGTATGAATTACTGACAGCAGACATTTTGTATTCACACTCTGTATTGTGGATACACAATGATTGAACAGATACATTCTGCAACTGGATCTAAATAGGTTTATCCAGAGATTAAATTACTCCATAAATTATTAAATGAATCATCAAATAGAGAGCTACCTTCAAACCCTTTTAAAATGCAGACTTGCGTGAGATAAAATGATCTTTTCAGCAACTGCCTTGtaaatgtcctggtgacatatCTTCACTCCTGTCATTCTAAACGAAAAGACCCAGAAGACGCAAAGCAATTATATTTCCTAGGTTCAACTGGCAACACAATTTACTGCAGGGAAGAATACACATTTTCAACAATTATCATCTCCACAAAAATATCAAGAAAtatcctgtttgttttgtttgttacaTATTTTCACATCTACGCTGCCTTGCTTGCTTATTTACATTAAATTATTTTCCAAAGAGTATACTTCTCAAATGCCTTGGATGtcttttatggattttttttacaACCTTTGTTACAGGCCACGTTTGAAAGAGCTATTCTGAACACAAAATATGCTTGTGAATGTATTTTTGAATGTTGTCTCACTCAAGGTATTACCATCACTGTTAGCGCACAGCATGCTTAAACATAGTTATTTGGAGCAAAACAGAAACAAATAAGTATTAGAAAGAGTTCTGAAAAATGACTACAGACAGAGCGATACTTCATGGCACTTGTATTTTGCAACCCATGCAAGCTTAAATTTTttttgagaggggggggggggacttataTGTGTTTACAGGATATATTAATTTTATTTTACTGAAAGTATCAATTTCACAGTCACATGGATTTTGTGACATGCTGTAAGCAATCAAGCAGCCCCCaaatgtttttatgtttttttgaCACACCAAAGTTTTTAGAAAAAAAAGACGAagaattcagcaaaaaaaaaatatagaatCTGTATTTCTACAAATAAAAAAAGAGGCATGTGattgtgtctcaatgtaatcaagctatgaaattattgttattttgaAATGCAATGTATTTTTGGGCTTAGtagtggtcaatttgcagtgcaagttattattattttcctTCCCCCCCGACCATTCACTCTGACAAAAATCGGGccacagctgaatctagttgcctaacACTGCTGTAAGCATTTCAAAGCTGTTATGAAAATGTTGACTCTATGATTTCAGTCATTATTGTTTTAGTTTTTTAACTGAAATACTCCATCTTTTGGAATCAATGCTTgctaaactgggtggttcgagccctgaatgcagtttggctgacagccgtggtatatcaggtatgacaaaacatagattttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1660584 lncRNA upstream 9463 42425633 ~ 42425865 (+) True G1451210
TU1660575 lncRNA upstream 20073 42414928 ~ 42415255 (+) True G1451201
TU1660574 lncRNA upstream 21042 42414076 ~ 42414286 (+) True G1451200
TU1660551 lncRNA upstream 23995 42410730 ~ 42411333 (+) True G1451179
TU1660550 lncRNA upstream 27566 42406598 ~ 42407762 (+) True LOC110493907
TU1660929 lncRNA downstream 25133 42542089 ~ 42542319 (+) True G1451534
TU1660947 lncRNA downstream 46989 42563945 ~ 42588386 (+) True G1451551
TU1660960 lncRNA downstream 74760 42591716 ~ 42591935 (+) True G1451562
TU1660944 lncRNA downstream 115712 42632668 ~ 42636308 (+) True G1451549
TU1660977 lncRNA downstream 120267 42637223 ~ 42697720 (+) True G1451578
XM_036949895.1 mRNA upstream 27483 42329566 ~ 42407845 (+) False LOC110493907
XM_036949903.1 mRNA downstream 11793 42528749 ~ 42532546 (+) False LOC110493909
XM_021568505.2 mRNA downstream 11794 42528750 ~ 42532546 (+) False LOC110493909
XM_021568506.2 mRNA downstream 11794 42528750 ~ 42532546 (+) False LOC110493909
XM_021568507.2 mRNA downstream 11797 42528753 ~ 42532546 (+) True LOC110493909
XM_021568510.2 mRNA downstream 82764 42599720 ~ 42632365 (+) False LOC110493911
TU1659721 other upstream 544813 41792883 ~ 41890515 (+) True G1450387
TU1659644 other upstream 741610 41642123 ~ 41693718 (+) True LOC110493897
TU1658524 other upstream 1467262 40949542 ~ 40968066 (+) True LOC110493893
TU1657230 other upstream 2635092 39799936 ~ 39800236 (+) True G1447998
TU1656618 other upstream 3008428 39343027 ~ 39426900 (+) True pmepa1
TU1661375 other downstream 811630 43328586 ~ 43459832 (+) False G1451948
TU1661383 other downstream 812143 43329099 ~ 43409816 (+) True G1451956
TU1661373 other downstream 816559 43333515 ~ 43428562 (+) False G1451948
TU1661374 other downstream 816559 43333515 ~ 43436740 (+) True G1451948
TU1661834 other downstream 965304 43482260 ~ 43483693 (+) True G1452359

Expression Profile