RNA id: XM_021568513.2


Basic Information

Item Value
RNA id XM_021568513.2
length 2486
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110493915
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 42770305 ~ 42776295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGCAATTTGAGACTTGCAATTTGAGACGCTTTTCTCTGCCACGTAGCTTCAACTTCCTGATGTAAAGTCATACATTGTGTTGCTCCGAAGTTAACCAAATGCATCTTCACCAGAAACATTGTAAGAACATGAGTCGAGAAATGCCAACATGGACTGAGCCTTGCTTgaactgaaatgtgtttttagtTGAAGGAATAGCAACTCAATATTATGGGTTGCTCCACCCTGGCCCTCTCCAGTGTGGTGTCCACGCTTGGTGGCCTGGTCTTTGGTTACGAGCTGGGGATTATCTCCGGGGCTCTCCTCCAGCTCCAGGCCGAGTTCCGACTCACTTGTGTCCAGCAGGAGGCTGTGGTCAGTGCCCTTCTGATCGGGGCCTTGCTGGCCTCCCTGGTTGGTGGTTGGCTGATTGACCGCTACGGCCGGAGGAACTCCATCCTCCACAGCAACGTCCTCATCCTGGCCGGGAGTTTGATTCTGGTCAGCAACTCTTACTTGGCACTGGTGGTGGGCAGAATCACGGTGGGCTTCGCCATGTGCATCTCCTCCATGTCCTGCTGTATCTTTGTATCGGAGATGGTCACCCCCAAGCACAGAGGTTTTTTGGTGACTCTGTACGAAGTTGGTATCACCGTGGGCATCCTGGGAGCTTACGCCATAAACTATATCCTGTCCGATGCCAGGCAGGGATGGAAGTATATGTTTGGGTTAGCCATCGTGCCTACTTTGGCTCAGTTTGTCTCCATTTGGTTTCTCCCGTCCAATGCCGGAACACCTGCAGCAGGCCAAAGGGCAGGTGCTCAAAGCCAAAGAGGTCTTATTCATTCCCTTGAGAATCCCAAAGTGGAGAATTCGGCACATGTTTCCAACATACTTGATAACCCACAGTACAGCTTTCTGCACCTCTTTCAACAGAAGGACAACATGAGGACCAGGACTACCATTGCACTAGGCTTGGTGATCTTTCAACAGTTCACAGGTCAGCCCAATGTGCTCTTCTACTCCTCAACCATCTTTCAGTCAGTGGGCTTCAAGAGCAATGCCTCGGCAGTGCTGGCGTCCTTGGGCTTGGGGGTAGTCAAGGTGATCGCCACCTTGGTCTCCATGGTGTTTGCTGATAGGGTTGGCAGGAGGCCTCTGCTCATTGGTGGATGTATAGTAATGTCCGTGTGTTTGATGACCATAGGACTTTTGAGCGGGCGTTCAGTGGTCAACACCAACACACCCTGTAATGCTGGGGATTATGTCAATAACAGCACACCCCTATCGCAGCTAACGGTAGAAAATCAATCAAGCTTTGACATTTCTGTCAGTCAACGCCTTGGACGTCACGATAGGACCGAAGTAACGGATATCGCTTACGATGCTGAGAGATCGTTTGGTACTTTGATGCCAGTGGCTTCTCCAGCTGTCCACAATGGAGTGGTGAACTGGATAATTTTATTCTGTATGATGGCAGTCGTCAGTGCATACTCAGTTGGATTTGGACCAATGACCTGGCTCATTTTGAGTGAAATATTTCCTGCTGCGGTCAGAGGGAGAGCGTTTGCCTTCACAAACTGCTTCAACTGGGCTGCCAACTTAATTGTCACATTCTCCTTCTTGAATGTCATCAATGTGATTGGTTTGTCTGGGACATTCCTTTCTTATGGGCTGATTGGAGTGGGAGCGGTGGTGTTCTTTTACTTCATGTTACCAGAGACCAAAGGGAAATCACTGGAGCAAATAGACAGGGAGCTCTGTTTGAAAAGGGTCCACAACAGTGAAGAATGCTGTAACATCCTTAGCAGGAGAATCACTTCCCCCGGGTATCAAAGAGTGCACATTGTTAGCTCAGCAACCCAATGTTGAGCAAGTCTACCCAAGTGTTACATtctaagtatatatatatatatttttacactcTTTTAACCTGACTGAAACAACGGACTGATGCGAATGGCGGTACTGAAAAGTTGAGCGTAGTGATCCGTCCAGCTACCATAGCAGAGCTTACGACATGACTGAACAATGTTTTTATTGCACTGGTATTTCAAACTTATTTTTCCCGAATGCTTGTGAACAATTCTGTCACTTGTTTTCACAAATGAAAAACAATGTTTTTGCATGTCACTTTGCTCTTTCTACTACTTTTCAAGTCTGCAAGAAAAATAACAGCAGTTTTCCATTTCCATCAAGAGTCAACCTGTACGGGGGTCATCATCTGGCATCACCATCATCAGTTTAGGAGTCTGAGATCGCTGATCCACTGAGGGAGTCTTGCTCTAACCAATGACAATGTTGTCCTATCCTTCACTTTGTTCTATGTATAACCCAAGGGTGCCTAGCCTACAATGTTTATGTTTGTAAAATGTTTAACCATTTAGAGAACCATAATGGAAATACGTTTTCAAACTTTTGTGTCATCCTCAAAGATTTTAAATGCATTATCCAcgtgtggttgtattgtgtttGAAATCAAATAAATCTATAACCTCGACTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1661212 lncRNA upstream 6079 42753082 ~ 42764226 (+) True G1451805
TU1661191 lncRNA upstream 40503 42729602 ~ 42729802 (+) True G1451784
TU1661184 lncRNA upstream 45849 42724219 ~ 42724456 (+) True G1451777
TU1661183 lncRNA upstream 46090 42724011 ~ 42724215 (+) True G1451776
TU1660977 lncRNA upstream 72585 42637223 ~ 42697720 (+) True G1451578
TU1661226 lncRNA downstream 13341 42789636 ~ 42790325 (+) True G1451817
TU1661250 lncRNA downstream 40250 42816545 ~ 42816745 (+) True G1451838
TU1661254 lncRNA downstream 46577 42822872 ~ 42823113 (+) True G1451842
TU1661263 lncRNA downstream 54901 42831196 ~ 42831396 (+) True G1451851
TU1661241 lncRNA downstream 62378 42838673 ~ 42866761 (+) True G1451832
XM_021568511.2 mRNA upstream 8196 42740378 ~ 42762109 (+) True LOC110493912
XM_021568510.2 mRNA upstream 137940 42599720 ~ 42632365 (+) False LOC110493911
XM_036949904.1 mRNA upstream 137943 42599873 ~ 42632362 (+) True LOC110493911
XM_036949903.1 mRNA upstream 237759 42528749 ~ 42532546 (+) False LOC110493909
XM_021568523.2 mRNA downstream 174233 42950528 ~ 42952198 (+) True LOC110493924
XM_021568344.2 mRNA downstream 483871 43260166 ~ 43270260 (+) True LOC110493836
LOC118940459 mRNA downstream 543502 43319797 ~ 43330019 (+) True LOC118940459
LOC118940518 mRNA downstream 547233 43323528 ~ 43323647 (+) True LOC118940518
LOC110493832 mRNA downstream 554134 43330429 ~ 43330803 (+) True LOC110493832
TU1659721 other upstream 879790 41792883 ~ 41890515 (+) True G1450387
TU1659644 other upstream 1076587 41642123 ~ 41693718 (+) True LOC110493897
TU1658524 other upstream 1802239 40949542 ~ 40968066 (+) True LOC110493893
TU1657230 other upstream 2970069 39799936 ~ 39800236 (+) True G1447998
TU1656618 other upstream 3343405 39343027 ~ 39426900 (+) True pmepa1
TU1661375 other downstream 552291 43328586 ~ 43459832 (+) False G1451948
TU1661383 other downstream 552804 43329099 ~ 43409816 (+) True G1451956
TU1661373 other downstream 557220 43333515 ~ 43428562 (+) False G1451948
TU1661374 other downstream 557220 43333515 ~ 43436740 (+) True G1451948
TU1661834 other downstream 705965 43482260 ~ 43483693 (+) True G1452359

Expression Profile