RNA id: XM_021568523.2


Basic Information

Item Value
RNA id XM_021568523.2
length 1428
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110493924
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 42950528 ~ 42952198 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGTTTCTCACTTCAGTCTTTCATCACACTTATCTTCACAGATGGTGTTAAAGCACTCCGTACCAGGGATCGTGGTCCAACGCCACTGCTCCTGTGTTGCAGAAAGTGCTGTGTGCAATCATCTGGTGGCCCTTCTTTACCAGACAGCGCACTACTCTCAACTAAACATTCCTGCTGCACCACCAGTTCACAGCTGCACAGACACAGAACAGCGTTGGCACGAGCCATGAACACTTGGTGTGAAGCCAGGTCCGGTTGATGGGATAGTTCCGTAAACCTACTAACTCGTGTGCTGATGGAATAAGAAGTTCTCTCTACAAAGCACTCCATGGATATATGCCTGACATGGACCTTCTCCGCGTCTCAGAAACGTATGCCAACTTTTCTCCACTTACTGCCCCTCTGgtgacaacaatggaaatgtcagCTGATGTGCCCCTGGTTGAGTCCGCCTTTGGGCCAGTGCAAGCTGGCAGTGTGCTGTCCTATCAACTTCCACAGCCAAAGACccgtgaaattgtgaaaattgcCGATGCCCCTTCTCCACTAATACTTCCGTTAGATGGCAACAGGCTTCAGTCTTCCCAGTGTGCTTACGTCCTTAGCCATCAGGGGCAGTTCCAGGTCAAGGCATTAGAGACAACCTACGAGAAGTCACACAAAGTCGAGTTTGCTACAAGGGAGCAGAGCAGCAGCCCGGAATGGCATCAGCTCAGGAAAATGAGAATAACATCGTCTCGTTTCCGAGAGATTTGCCATGTCCGGGGAGAGACCTCAGCGGACCGCCTAGCTGAGCGGATGTTCAAGGGATCTGGTGTGCAGACCGTGGAGATGAAGAGGGGGCTAGCCATGGAGCCAGTGGCAGTACAGGAGTACTGCACACTGAAGAATGTTAACTTCTTTCCATGTGGCTTCGTAGTGCACCCAGATGCTCCGTGGTTAGGATCCTCTCCAGATGGCATCATATTTGATCCCAGTGTGAGACCACACTTTGGACTCTTAGAGGTCAAGTGCCCAAATGTACCAAGTTAGGTTGACTGCCTTTACCTGAGGATACAGAATGGAGAGCTGAAGTTAAAGAGATTTCATGCTTACTACTGGCAGGTGCAAGGTCAAATTCTTCTCACAGGTTGTAGCTGGTGTGACTTTGTCATCTGTGCACAGGAGGACATCCTAGTTGAAAGGATATCTAAAGATCTACAGGTTTCAAAAACTATAAGAGAGAAGgttgaacacttttatttttacCACTACTTGCAGAAGTGTCTCTCGcacctgaatggatcccctgcatGGGTGCAAAGTTTAGTGGTTTCATGAAAAATAACTATTGATGTTCTTGTGAAGAAAACTGCAGTAGAATATATTTGtttaaaataatgtatttcaGCAAATGTTCATCAGTTCAGTTAATCAATTACACATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1661294 lncRNA upstream 61694 42883680 ~ 42888834 (+) True G1451880
TU1661241 lncRNA upstream 83767 42838673 ~ 42866761 (+) True G1451832
TU1661263 lncRNA upstream 119132 42831196 ~ 42831396 (+) True G1451851
TU1661254 lncRNA upstream 127415 42822872 ~ 42823113 (+) True G1451842
TU1661250 lncRNA upstream 133783 42816545 ~ 42816745 (+) True G1451838
TU1661398 lncRNA downstream 37439 42989637 ~ 42989896 (+) True G1451971
TU1661429 lncRNA downstream 72946 43025144 ~ 43025387 (+) True G1452000
TU1661435 lncRNA downstream 87454 43039652 ~ 43040023 (+) True G1452006
TU1661436 lncRNA downstream 89848 43042046 ~ 43042283 (+) True G1452007
TU1661439 lncRNA downstream 95070 43047268 ~ 43047948 (+) True G1452010
XM_021568513.2 mRNA upstream 174233 42770305 ~ 42776295 (+) False LOC110493915
XM_036949906.1 mRNA upstream 174233 42770305 ~ 42776295 (+) False LOC110493915
XM_036949905.1 mRNA upstream 174233 42770359 ~ 42776295 (+) True LOC110493915
XM_021568511.2 mRNA upstream 188419 42740378 ~ 42762109 (+) True LOC110493912
XM_021568510.2 mRNA upstream 318163 42599720 ~ 42632365 (+) False LOC110493911
XM_021568344.2 mRNA downstream 307968 43260166 ~ 43270260 (+) True LOC110493836
LOC118940459 mRNA downstream 367599 43319797 ~ 43330019 (+) True LOC118940459
LOC118940518 mRNA downstream 371330 43323528 ~ 43323647 (+) True LOC118940518
LOC110493832 mRNA downstream 378231 43330429 ~ 43330803 (+) True LOC110493832
XM_036948407.1 mRNA downstream 380117 43332315 ~ 43332962 (+) False LOC118940144
TU1659721 other upstream 1060013 41792883 ~ 41890515 (+) True G1450387
TU1659644 other upstream 1256810 41642123 ~ 41693718 (+) True LOC110493897
TU1658524 other upstream 1982462 40949542 ~ 40968066 (+) True LOC110493893
TU1657230 other upstream 3150292 39799936 ~ 39800236 (+) True G1447998
TU1656618 other upstream 3523628 39343027 ~ 39426900 (+) True pmepa1
TU1661375 other downstream 376388 43328586 ~ 43459832 (+) False G1451948
TU1661383 other downstream 376901 43329099 ~ 43409816 (+) True G1451956
TU1661373 other downstream 381317 43333515 ~ 43428562 (+) False G1451948
TU1661374 other downstream 381317 43333515 ~ 43436740 (+) True G1451948
TU1661834 other downstream 530062 43482260 ~ 43483693 (+) True G1452359

Expression Profile