RNA id: LOC118940459


Basic Information

Item Value
RNA id LOC118940459
length 1774
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC118940459
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43319797 ~ 43330019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGAACAATAGGCCATATACAAACTGTGTTTCACGTAGGTTTACCTGGCGGGACGTTTTGATAaacgtgtaaatctctctaggtaggacaaggtgacttttatcaacaTATTCGCCTGTATTTACTCCCGAAAAATGAAACGCTagttagctgctaatgtggctatcataaagagtTACAAATGctatgatctggacgagactgccgaaccgaggcaaagCTTGCAGAGGTATCACCACTCTTCCCATGGCCACCTGGATCCTGTCtagggaagaaaaagaagaatgaTGTTATTACATGGCCTTCAAGAGCTACATGACTGCTGAGGTGACATTATGGACCCCTTAGGATTTGTGGCATTCCTTGTGTATTTGTTTCCCGTTTGTGCCACTTCGTTTCTCCTTTGTACTTGTGACACTATTTGAGGTTTTAACGCCTATCTCTATTAGGTGTGACTGGCAACTGCAGTGGGTTGAATCCTACtagttcagtgtttcccaactccaggcaggggtagagtagccatttttgttgtagccctggagaggcacagctgattgaaagagttgaatcaggtgcaacaacaacaacaagaagaacaacaccaatcaatgtgaagagtgggacatcacagttgggccttgtgttcaacatagctcagtatttgagtgTGTTTCCCGCGCATGCAAGTAGCTTTGATTTCTTCTTCCTCCATAGTTCCCTAGAACGAACGCCCTCCCCTTTGCAGCAGAAGTTAGGCAAAAGTGTGCGCTTTCTGTGCCACTGGCTTCAATCAGGTCCACCAAACGCAGATAATAAGAGCACCAAGCACCGAAAATTACGTCATTAATTCACTTGAACTCAGCTAGCGAACACACGATGTCTGGAAGAGGTAAAGGCGGCAAGGGACTCGGAAAAGGAGGCGCCAAGCGTCACCGTAAGGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCATTCGCAGTCTGGCTCGCCGTGGCGGCGTGAAGCGTATCTCCGGGCTGATCAACGAGGAGACCCGCGGTGTCCTGAAGGTGTTCCTTCACCTACACCGAGCACGCCAAGAGGAAGACCGTTACGGCCATGGACGCTCTGAAACGCCAGGGACGGTGCGTCCCTGTACGGTTTCGGCGGTTAAACGCACTCTTCTCGGAACGTCAACATCCCGACTtgaacccaaaggctcttttaagagtgttatataaatattcatacacatagctcatatattatACAGCGCTAAGCTAAACCGCCTGACTCAAGTCATCTTACGTACCCTTGCTAAAACAGGAACTAGCTCACACAGTCAGCAATAAAACTACCCCCCTAACACTATCCCCTCAGCTTTGTTGCCTCCCGACCCCAGGAAACAAAGACACTCCATCGCATGAACACATACACCCACCCATAAAAACTGCCCCTCTACCTCACGAACCCCTGACACAAACATCTCCTAGTATAAACACATCTCACCCCCCCTACTGGTCGGGTGCCAAGAGCAAAGgactttgctgtgcaccaatggggcccgctctggctagagcaaggcccgcctccaaccctttgtgaccagtcagaagaccaaaacgacaagactccacctactttattttatgtataaaaatgaatgtaaccgttgtataaggcctctttttcacctgactcCTTGCTGAGTTATATGAACTagatccgtgcacgtaaaactgcgggacaagatatctttgactcattaaaactgtcttttgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1661505 lncRNA upstream 967 43315934 ~ 43318830 (+) True G1452073
TU1661504 lncRNA upstream 2148 43315934 ~ 43317649 (+) False G1452073
TU1661380 lncRNA upstream 46626 43272151 ~ 43273171 (+) True G1451953
TU1661385 lncRNA upstream 47740 43271313 ~ 43272057 (+) True G1451958
TU1661478 lncRNA upstream 67123 43250676 ~ 43252674 (+) True G1452048
TU1661378 lncRNA downstream 2548 43332567 ~ 43341386 (+) True LOC118940144
TU1661839 lncRNA downstream 167517 43497536 ~ 43497760 (+) True G1452364
TU1661842 lncRNA downstream 169875 43499894 ~ 43505382 (+) False G1452366
TU1661841 lncRNA downstream 174458 43504477 ~ 43517376 (+) True G1452366
TU1661848 lncRNA downstream 178700 43508719 ~ 43552834 (+) False G1452369
XM_021568344.2 mRNA upstream 49537 43260166 ~ 43270260 (+) True LOC110493836
XM_021568523.2 mRNA upstream 367599 42950528 ~ 42952198 (+) True LOC110493924
XM_021568513.2 mRNA upstream 543502 42770305 ~ 42776295 (+) False LOC110493915
XM_036949906.1 mRNA upstream 543502 42770305 ~ 42776295 (+) False LOC110493915
XM_036949905.1 mRNA upstream 543502 42770359 ~ 42776295 (+) True LOC110493915
LOC110493832 mRNA downstream 410 43330429 ~ 43330803 (+) True LOC110493832
XM_036948407.1 mRNA downstream 2296 43332315 ~ 43332962 (+) False LOC118940144
LOC118940451 mRNA downstream 3411 43333430 ~ 43334041 (+) True LOC118940451
XM_036949936.1 mRNA downstream 11377 43341396 ~ 43342673 (+) True LOC118940452
XM_036949935.1 mRNA downstream 12735 43342754 ~ 43343223 (+) True LOC118940450
TU1659721 other upstream 1429282 41792883 ~ 41890515 (+) True G1450387
TU1659644 other upstream 1626079 41642123 ~ 41693718 (+) True LOC110493897
TU1658524 other upstream 2351731 40949542 ~ 40968066 (+) True LOC110493893
TU1657230 other upstream 3519561 39799936 ~ 39800236 (+) True G1447998
TU1656618 other upstream 3892897 39343027 ~ 39426900 (+) True pmepa1
TU1661373 other downstream 3496 43333515 ~ 43428562 (+) False G1451948
TU1661374 other downstream 3496 43333515 ~ 43436740 (+) True G1451948
TU1661834 other downstream 152241 43482260 ~ 43483693 (+) True G1452359
TU1661837 other downstream 161155 43491174 ~ 43492068 (+) True G1452362
TU1661856 other downstream 211645 43541664 ~ 43563701 (+) False G1452369

Expression Profile