RNA id: TU1661378


Basic Information

Item Value
RNA id TU1661378
length 490
lncRNA type read_through
GC content 0.58
exon number 2
gene id LOC118940144
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43332315 ~ 43341386 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGTCCAGACCAAGGGCACCGGTGCCTCCGGCTCCTTCAAGCTCAACAAGAAGGCCGTCGAGGCAAAGAAGCCCGCCAAGAAAGCCGCAGCCCCCAAAGCTAAGAAGGTGGCCGCCAAGAAGCCCGCCGCCGCCAAGAAGCCCAAGAAGGTAGCAGCCAAGAAGGCCGTGGCCGCAAAGAAGTCCCCCAAGAAGGCCAAGAAGCCCGCTACACCCAAAAAGGCCGCCAAGAGCCCAAAGAAGGTGAAGAAGCCCGCCGCAGCGGCCAAGAAAGCGGCCAAGAGCCCCAAGAAGGCTACCAAGGCAGCGAAGCCCAAAGCCGCCAAGCCCAAGGCGGCCAAGGCCAAGAAGGCAGCCCCCAAGAAGAAGTAAACCTATTACAAACAGTGTTCTTTCTACTCGACACATGTTGTTACCacaaaaggctcttttaagagccacccacctctttccataaaagcgcatgtcattccattccacctacctaccc

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0042742 defense response to bacterium biological_process
GO:0000786 nucleosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1661522 lncRNA upstream 5635 43326718 ~ 43326932 (+) True G1452090
TU1661521 lncRNA upstream 5869 43326395 ~ 43326698 (+) True G1452089
TU1661519 lncRNA upstream 11545 43320785 ~ 43321022 (+) True G1452087
TU1661505 lncRNA upstream 13737 43315934 ~ 43318830 (+) True G1452073
TU1661504 lncRNA upstream 14918 43315934 ~ 43317649 (+) False G1452073
TU1661839 lncRNA downstream 156150 43497536 ~ 43497760 (+) True G1452364
TU1661842 lncRNA downstream 158508 43499894 ~ 43505382 (+) False G1452366
TU1661841 lncRNA downstream 163091 43504477 ~ 43517376 (+) True G1452366
TU1661848 lncRNA downstream 167333 43508719 ~ 43552834 (+) False G1452369
TU1661859 lncRNA downstream 167333 43508719 ~ 43562011 (+) False G1452369
LOC110493832 mRNA upstream 1764 43330429 ~ 43330803 (+) True LOC110493832
LOC118940459 mRNA upstream 2548 43319797 ~ 43330019 (+) True LOC118940459
LOC118940518 mRNA upstream 8920 43323528 ~ 43323647 (+) True LOC118940518
XM_021568344.2 mRNA upstream 62307 43260166 ~ 43270260 (+) True LOC110493836
XM_021568523.2 mRNA upstream 380369 42950528 ~ 42952198 (+) True LOC110493924
XM_036949936.1 mRNA downstream 10 43341396 ~ 43342673 (+) True LOC118940452
XM_036949935.1 mRNA downstream 1368 43342754 ~ 43343223 (+) True LOC118940450
XM_036949940.1 mRNA downstream 6004 43347390 ~ 43348641 (+) True LOC118940456
XM_036949937.1 mRNA downstream 7677 43349063 ~ 43349732 (+) True LOC118940453
XM_021568346.2 mRNA downstream 28004 43369390 ~ 43395004 (+) True LOC110493838
TU1659721 other upstream 1442052 41792883 ~ 41890515 (+) True G1450387
TU1659644 other upstream 1638849 41642123 ~ 41693718 (+) True LOC110493897
TU1658524 other upstream 2364501 40949542 ~ 40968066 (+) True LOC110493893
TU1657230 other upstream 3532331 39799936 ~ 39800236 (+) True G1447998
TU1656618 other upstream 3905667 39343027 ~ 39426900 (+) True pmepa1
TU1661834 other downstream 140874 43482260 ~ 43483693 (+) True G1452359
TU1661837 other downstream 149788 43491174 ~ 43492068 (+) True G1452362
TU1661856 other downstream 200278 43541664 ~ 43563701 (+) False G1452369
TU1661935 other downstream 264927 43606313 ~ 43606781 (+) True G1452399
TU1662359 other downstream 1171683 44513069 ~ 44520477 (+) True G1452804

Expression Profile