RNA id: TCONS_00046258


Basic Information

Item Value
RNA id TCONS_00046258
length 5604
RNA type mRNA
GC content 0.50
exon number 40
gene id XLOC_023391
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 18736916 ~ 18877118 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTATGAAGGCAAAAAGAcgaaaaacatgtttttaaccaGAGCTTTGGAGAAGATCTTGGCCGACAAGGAGGTGAAAAAGGCTCATCACTCGCAGCTGCGCAAAGCCTGTGAGGTGGCATTAGAGGAAATCAAGCAGGAATCGGAGAAATTAAGctCACCGGTCGGCGACAACAAGTCGAGTTCCAGCACTTTGCCACCAATCAAGTCGAAGAGCAGCTTCATTGAAGCAGATAAATACTTCCTGCCATTTGAGTTGGCCTGTCAGTCCAAATGTCCTCGCATCGTCATCACCTCTCTAGACTGTTTACAGAAACTCATAGCGTATGGTCACCTGACGGGCAGCGCTCCAGACAACACCACACCAGGGAAGAAACTCATCGACAGGATCATAGAGACTATATGTGGCTGCTTTCAGGGCCCGCAGACAGACGAAGGAGTCCAGCTACAGATTATAAAGGCCTTGCTGACAGCGGTGACATCCCAGCAAATAGAGATCCATGAGGGCACAGTCTTACAGGCCGTCAGAACATGCTACAACATCTATCTGGCCAGTAAAAACCTCATCAACCAGACCACGGCCAAAGCCACCCTCACCCAGATGCTGAATGTCATATTCGCCCGCATGGAGAACCAAGCACTTACAAATCACAAGATCAGTTGGTCTTTGGCATCAAGAAAGCGAGATCGTCAGCTGCAGGAAGCCAAGCAGATGGAGAGAGAGCGCCACAGACAGCATTCTCCTGTCAGTCAGCAAGAGCCTGAATCTCCTGGACAGAGGCACACCGAGACCCCTGGCAAAACCCTGCCAGCTGAGGGCAACGGTGGACCTGGACATCAGGGTGGTAAAGTGGAGCAGGGTTCCCCACCGTATGAGAGTCCCGAGCCAGAGAATGGAAGTGACTTCTGTCCTGCGGAGAATGAGCAGACCGAGGCTGACCAGGCCACCGCTGCAGCACAAAGTGCAGCAGAGCATGCCACTGAAGCCAGCGAGGAGGATGAAAGGCAGAACTATGAAGAGAAGGCGCAGGAGATTGTGGAGAGCGTTTTGCTAGAAGTGGTGAACACAGTGGCTACAGgaaaCATGTATGTTACAGAAATGAAGGCAAGCCATGAGGGTGAGGCTGAGTCTGCGGAGGTCAGTCCAAACTCTCTGGAAGAGGAGGGAGGCTTGGGCAGCGACAACGAAAATGTTCACGCTAACGGCATCCCTGGCACTCCCATCTCCGCAAGCTTCACCCCATCCCTGCCCGACGACAGGCTGTCTGTCTCTTCTAATGACACTCAGGAATCGGTAGCCACCTCTGGTCAAGCACCAGGCGCAAAGTTTTCTCACATTCTCCAGAAAGATGCCTTCCTGGTGTTTCGTTCCCTCTGCAAACTCTCCATGAAGCCTCTTTCGGATGGACCGCCTGATCCCAAATCCCATGAGCTGCGGTCCAAGGTCCTCTCTCTGCAGCTCCTCCTGTCCATTCTGCAGAACGCTGGACCCATCTTCAAGACCAACGAGATGTTCATCAACGCCATCAAGCAGTACCTGTGCGTAGCGCTGTCTAAAAACGGCGTCTCCTCCGTCCCCGAGGTGTTCGAGCTGTCTCTGTCCATCTTCCTCACCCTCCTGTCCAACTTCAAGACACATCTCAAGATGCAAATCGAGGTGTTTTTCAAAGAGATTTTTCTGTATATTCTGGAAACTTCCACAAGCTCATATGACCACAAGTGGATGGTCATTCAAACCCTCACTAGAATATGTGCTGATGCACAGAGTGTAGTAGATATCTATGTTAATTATGATTGTGACCTGAATGCTGCTAATATTTTCGAGAGGCTGGTGAATGACCTCTCAAAGATTGCACAAGGACGAGGAGGTCATGAACTGGGTACAACCCCACTTCAGGAGCTGACTTTAAGAAAGAAAGGATTGGAGTGTCTGGTGTCCATTCTCAAGTGTATGGTGGAGTGGAGCAAAGACCAATACGTCAACCCCAATTCCCAGACAAGTCTTGGCCAAGAAAAGCCTTCAGAGCAGGAGAGCAATGAGTCGAAGCATCCAGAAACGATCAACCGTTACGGCAGCATTAACTCTTTGGACTCCACTGCATCATCAGGCATTGGGAGCTACAGCACACAGATGTCCGGAACAGACAACCCGGAGCAGTTTGAGGTCCTCAAACAACAGAAGGAGATCATAGAGCAAGGCATTGACCTGTTCAACAAAAAACCAAAGAGGGGCATTCAGTACCTGCAGGAGCAAGGCATGCTGGGAACAACGCCTGAAGATATTGCCCAGTTTTTACATCAAGAGGAGAGACTTGACTCTATCCAGGTAGGAGAGTTTCTAGGAGACAACGACCGCATCAATAAAGAGGTCATGTATGCCTACGTCGACCAAATGGACTTCCAGGGCAAAGACTTCGTGCCAGCGCTGCGCATGTTCCTGGAGGGTTTCCGTCTGCCCGGCGAAGCCCAGAAAATTGATCGACTGATGGAGAAATTTGCTGCTAGATATTTAGAATGCAACCAAGGGCAAACACTGTTCGCCAGCGCTGACACCGCATACGTTCTTGCGTATTCAATCATCATGTTGACTACCGATCTGCACAGTCCACAGGTGAAGAATAAAATGACGAAAGAGCAATACATCAAGATGAATCGAGGTATCAATGACAGTAAAGATTTACCGGAGGAGTATCTCTCAGCCATTTATGATGAAATCGCAGGGAAGAAAATCTCCATGAAGGAGACAAAGGAGTTAACTCTCAAATCAAATAAGCAAAGTGTGGCGAGTGAGAAGCAGAGGAGGCTGCTGTATAATGTTGAGATGGAGCAGATGGCAAAAACAGCAAAGGCTCTGATGGAGGCCGTGAGCCACGTTCAAGCCCCCTTCACCAGCGCCACACATCTTGAGCATGTCAGACCAATGTTTAAGCTGGCCTGGACGCCCTTTCTGGCTGCTTTCAGTGTGGGTCTGCAGGACTGTGATGACACTGAAGTGGCCTCTCTGTGTCTGGAGGGAATCCGCTGTGCCATCAGGATAGCATGCATCTTCAGCATTCAGTTGGAGCGAGACGCATATGTACAGGCTCTGGCCCGTTTCACACTCTTGACGGCCAGTTCTGGCATCACTGAAATGAAGCAGAAGAACATCGACACCATCAAGACCCTCATCACAGTGGCTCACACTGATGGAAATTATCTAGGAAACTCCTGGCATGAGATCATGAAGTGCATTAGTCAGCTGGAGTTGGCCCAGCTCATCGGGACAGGAGTGAAGGCTCGGTACATATCAGGAACTGTTCGGGGAAAGGAAGGCTTTATCACCAGCACCAAGGAACAAACGTCTGATGAATACCTGGGATTGGGAGGGAATGTTGATCGCAAACAGATTGCAAGCATTCAGGAGTCTATCGGGGAGACCAGCTCGCAAAGTGTAGTTGTTGCTGTAGACCGGATATTCACGGGCTCTACCAGACTTGATGGAAATGCCATTGtggacTTTGTGCGATGGCTGTGCGCTGTCTCGATGGATGAACTGGCCTCCCCAACACACCCTCGAATGTTCAGTCTGCAGAAGATCGTGGAGATTTCATACTACAATATGGGTCGTATCAGGTTGCAGTGGTCCAGGATTTGGGAGGTTATAGGGGATCATTTCAATAAGGTTGGCTGTAATCCCAACGAAGATGTTGCTATTTTTGCTGTGGATTCTCTGAGGCAGTTGTCCATGAAGTTTTTGGAAAAGGGAGAGTTGGCCAATTTCAGATTCCAGAAGGATTTCCTCAGGCCGTTCGAGCACATAATGAAAAAGAACAGATCTCCGACCATTAGAGACATGGTGGTTCGCTGTATTGCCCAGATGGTCAACTCTCAGGCTGGCAATATTAGATCAGGGTGGAAGAACATTTTCTCTGTGTTTCATCTGGCTGCTTCTGATCAGGATGAGAGTATAGTTGAGCTGGCCTTCCAGACAACTGGACACATCGTCACGAATGTATTTGAGAAGCATTTCCCAGCTACCATTGACTCCTTCCAGGACGCTGTCAAGTGTTTGTCTGAGTTCGCCTGCAACGCTTCTTTTCCAGACACCAGCATGGAGGCTATTCGTCTGATCCGCCACTGCGCCAAATATGTGTCAGACCGACCCCAGGCGTTTAAAGACTATACCAGTGATGATATGAATGTTGCCCCGGAGGACCGTGTTTGGGTCAGAGGCTGGTTCCCCATCCTTTTTGAGCTGTCATGCATCATCAACAGATGCAAACTGGACGTCCGGACCAGGGGTCTGACAGTGATGTTTGAGGTGATGAAGACGTACGGTCATACCTATGAGAAACACTGGTGGCAGGATCTGTTCCGCATCGTCTTCAGGATCTTCGACAACATGAAGCTTCCTGAGCAACAGACCGAGAAAGCGGAGTGGATGACCACCACCTGCAATCATGCACTTTATGCCATCTGTGACGTTTTTACACAGTACTTTGAGTCTCTCAGTGATGTTCTTTTAGATGATATCTTATCTCAGCTCTACTGGTGTGTCCAGCAAGATAATGAGCAATTAGCCAGATCAGGCACTAACTGCCTTGAAAACGTGGTCATCCTTAATGGTGAGAAGTTCAATCCTGAGACTTGGGACAAGACATGCAACTGCATGCTGGACATCTTCAAAACCACCATCCCACACATGCTGCTGACTTGGAGACCGGCTGGTGCTGAAGGAGATCACATGACTCAGCTGGAGTCTGATAAACAGCTGGACTCCATTTCCCAGAAGTCAGTGGATATTCAGACCCGCTCAGATGACCAGCAGTCTGTTAACAGTATGGAGAAGGCTTTGGCTGACAACCGCAGATACAGTCAGTTCAGTGTGGCTTCAGAAGCTCAGGAACAGAGGCTGTTTGCTGCGCTACTCATTAAGTGTGTGGTTCAGCTGGAGCTCATTCAGACCATTGACAACATCGTCTTCTTTCCTGCTACCAGTAAGAAAGAAGATGCGGAAAACTTTGCGGCTGCACAGAGAGATGCTTTAGATGCTGATATACATGTGGACACACAGGACCAGGGAATGTATCGCTATCTGACCTCAGAACAGCTCTTCAAACTGCTCGACTGTCTGCTGGAGTCTCATCGATTTGCAAAGGCCTTCAACTCCAATAATGAGCAAAGAACTGCTCTGTGGAAAGCCGgttTCAAAGGGAAGTCGAAGCCCAATCTGCTGAAACAGGAGACGAGCAGCCTGGCGTGTGGTCTGCGCATCCTCTTCCGCATGTACACAGATCCAAGCCGACGGGATGCCTGGGAGGAGGTGCAGAGGAGACTGCTCAACGTTTGCAGTGACGCAGTGGCTTATTTTCTGACCCTCACGTCTGAAAGTCATCGCGAAGCCTGGACAAACCTTCTGCTGCTCTtcctgaccaaagtgctgaagaTCAGTGATGATAGATTCAAGGCTCATGCGTCCCGCTACTACCCTCTGCTCTGTGAAATCATGCAGTTCGACCTGATCCCGGAGCTGCGGGCCGTCCTGCGCAAGTTTTTCCTGCGCATTGGACTGGTTTTCCAGATCACCAACAGCCTGGAAACAAATCAAACTGTCAGCAACGCCTAA

Function

GO:

id name namespace
GO:0032012 regulation of ARF protein signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-108 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within protein transport and regulation of ARF protein signal transduction. Predicted to be located in Golgi apparatus and perinuclear region of cytoplasm. Is expressed in brain. Orthologous to human ARFGEF1 (ADP ribosylation factor guanine nucleotide exchange factor 1).

Ensembl:

ensembl_id ENSDART00000186269

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046254 lncRNA downstream 169761 18560253 ~ 18568486 (-) False XLOC_023389
TCONS_00046243 lncRNA downstream 271209 18460675 ~ 18467038 (-) True XLOC_023386
TCONS_00046239 lncRNA downstream 291643 18444191 ~ 18446604 (-) False XLOC_023385
TCONS_00046240 lncRNA downstream 291643 18445687 ~ 18446604 (-) True XLOC_023385
TCONS_00046238 lncRNA downstream 293168 18444191 ~ 18445079 (-) False XLOC_023385
TCONS_00046267 lncRNA upstream 831658 19708535 ~ 19709047 (-) False XLOC_023394
TCONS_00046853 lncRNA upstream 1082039 19958916 ~ 19962882 (-) False XLOC_023395
TCONS_00046854 lncRNA upstream 1083995 19960872 ~ 19962882 (-) True XLOC_023395
TCONS_00046271 lncRNA upstream 1133705 20010582 ~ 20012032 (-) True XLOC_023396
TCONS_00046275 lncRNA upstream 1183814 20060691 ~ 20062056 (-) False XLOC_023398
TCONS_00046251 mRNA downstream 53238 18520402 ~ 18685009 (-) False XLOC_023389
TCONS_00046252 mRNA downstream 53238 18520402 ~ 18685009 (-) False XLOC_023389
TCONS_00046250 mRNA downstream 53238 18520402 ~ 18685009 (-) False XLOC_023389
TCONS_00046249 mRNA downstream 53238 18520402 ~ 18685009 (-) False XLOC_023389
TCONS_00046253 mRNA downstream 79100 18521060 ~ 18659147 (-) False XLOC_023389
TCONS_00046260 mRNA upstream 3377 18880254 ~ 18919649 (-) False XLOC_023392
TCONS_00046261 mRNA upstream 6752 18883629 ~ 18919571 (-) False XLOC_023392
TCONS_00046262 mRNA upstream 18670 18895547 ~ 18919562 (-) False XLOC_023392
TCONS_00046265 mRNA upstream 830732 19707609 ~ 19718077 (-) False XLOC_023394
TCONS_00046266 mRNA upstream 830735 19707612 ~ 19718077 (-) False XLOC_023394
TCONS_00046256 other downstream 112880 18625252 ~ 18625367 (-) True XLOC_023390
TCONS_00046255 other downstream 139606 18560430 ~ 18598641 (-) True XLOC_023389
TCONS_00046245 other downstream 252756 18470166 ~ 18485491 (-) False XLOC_023387
TCONS_00046247 other downstream 252836 18473781 ~ 18485411 (-) True XLOC_023387
TCONS_00046242 other downstream 281663 18453172 ~ 18456584 (-) False XLOC_023386
TCONS_00046263 other upstream 33140 18910017 ~ 18919557 (-) True XLOC_023392
TCONS_00046264 other upstream 411777 19288654 ~ 19288768 (-) True XLOC_023393
TCONS_00046272 other upstream 1155454 20032331 ~ 20054257 (-) False XLOC_023397
TCONS_00046273 other upstream 1155463 20032340 ~ 20039150 (-) True XLOC_023397
TCONS_00046277 other upstream 1310439 20187316 ~ 20187430 (-) True XLOC_023401

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_03035039_03102978.mRNA True 6899 mRNA 0.49 42 CI01000018 3034649 ~ 3103604 (-)
bowfin (Amia calva) AMCG00019420 True 5628 mRNA 0.51 37 CM030124.1 19367972 ~ 19400055 (-)