RNA id: XM_021568537.2


Basic Information

Item Value
RNA id XM_021568537.2
length 2902
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110493929
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43985916 ~ 44097283 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGTTTTTGCCAAAATGCCACGTGCGTCAACTCACCAGTGCATTTATAAAAACCTAACCATTACGAAGCTTATATTCGATCGAATAAACCTCACGTAGCAAGTACATCTTTGGTTGAGCAAGTTCGACATTCAATGACACCCCCCATACAAAAATCGCTCACTTCGTGGTCTTATTTTGGTGACAGATTTTGGGCGGAGTGAAccctctcgctttgcctcttTCCCTCGGAACGAACCGTTCTCAAAATGGTGTAAAGAGGGAAAACCACAACACGCCCATTTTTGAATGAACAAGTAATCTGCAGTCAACAACCTGGCTTCGTCGTAGTGAAAGGACTGCGTGAATACTTCGTTTTCAAATTTGCACTCCCATCCCACTAATTCACGGGGATTATAGCTAACACGCTATCTAGGCAGCGCAGCTCCAGCTAACTATGGAGCCCTCCGACCAACAGACAGGTCCAGACTCTGGCTCTCAGGAGGTCAACTCTGTGTACCTACAGCAGCTTCGGGAGCTGGACATCCCAGAGGAGGCTGCCAAGCAGGCACTCTTGCACACCCGAAATGTGTCTGCTGAGGAGGCTGCCATGTACTACTTTAACAAGCTGGAGAATGAGGAAGAAGGAGACGACGACCTCATGTTCAAGATGGTGTTTGTGGTGAACATGGACCTGGCCATGGGTGTGGGAAAGGTGGCTGCGCAGGTGGGCCATGCGGCCGTAGGGCTTTACCAGGCCCTGCAGGAGAAGAACAGCTGGAGGGAGATGGCCTGGAAGTGGGACCATGGCGGGGCGAAGAAGGTGGTGTTGCAGGGGACCAACATGGCTCACCTTTTGGAGCTGCAGGCCCTGGCAATGAGCCTTAGCCTGCCAACGTATCTGGTCCAGGACGCCGGACGCACCCAGGTGGAAGCTGGCTCGCGCACCATCCTGGCCATCGTTGGGGAAGAGGATATGGTGAACAACGTCACTGGAAGTCTGAAGCTGCTCTGAGGGACTTAACCGGCTGTGGAGGTGCAGGGCCATGTACAGGGCCATGTGCTGCCACTGGGGcaaccagcagagggcagcatCCCCTAACAGCAAAAGGGTCTCAACATGCAAGCGCATAACAACAACGTAATGAAACAAAAAACAGGAAAAAAGAAACAACCAGACATGACCCAACCACCAAGTCGAACACACTCAGCCATTTTTCTTCTTGTTTCCTGTCTGATCCACTGACTGGATAAGAGATGTACACAGAGCTGCTTAGATTGAGAGGAAGGGACTGGTTCCCCGAACTGACCATGTTGAAGGCAGTTTGAACAACTTTTAGTGTCTACTTGTATCTTTTTTTGATTATGGAGTTTTGCTAGTTAAGGGAAAGTCCATTACTATATGAGAGCATCATATCCAATTTTTATAAAAGTGTAAGTCCATGACAATCTTAATTCCATCTCCCAATTCAAGATATGATTTTAGCGTTTGAAAAAAAATCAAGGATAGAACCTTGTCTTTTGGTGATTTGTTAAATACTGTTGTCATAAATTCAAGGAGCGAAATATGTAATTGTAATATCCTTTTAGATCCTTTAGGATACTGCTGGGGAAGAGTGCTTTACTGATACCTTTACTATTTATTTGATGTATAAAATGAAGGTGTATATGTATACATTCTCTCCCCAAGACCATGTCCCTTAGAATCTATAACACTACATACTGATGTCAAATGTCCATCCATTGCATTTATGTGCATCTGCTTAGGCCATATATAATGTGGTGTGCCCATTGAGATAAAGGGCTCATCtttatctgtgccattatagcattttgacagcatgggcagtgccattgaggctagaacccataggaatccccacccagttgactactttgacTACTTCCAAATGGTGGAAACatggaagccctcaatggtgctgcccatgctacAGGCTTTTGGCTGCTAGAAGTCTATCAGTCGCTATGGGTGTGCCATCCTCCACGTTTCGCACAATCACTGTTGGACTTTGTGACAATTTTTGTGgtgtattttacatttattttatttttctgttcttgcaacaacaaaaaaaaggggGGGTAAGGTCGACTTGGCTCAATGAGTTGTAATTCCTTGACTGGGGACTTGGTAGAATTAACACTGTATTTGGTTAATAGGATTTGAGTGCAAGGAACTCATTGTATGGGTCAAAATAAGTGACAGTGCAGATGCTTGCACAGTGCCTAAGCGCATGTACTTTACCTGATTATTATGGATAATAGTTTACACAAGTGAAATATTTGTGTAACTGCTTTGAGGGTAAATGTGTTAGcacactgtagctagctagctaaatggttGCGCAATTAGTTTTTTACCAAACCGGTACATACAGTTTAAGATGGCGTAGCAAATACAGGTTAACATTTGTTAAGGACCGCTTAAAGAATGATTGATTTAAGTGCAAGAATCTTCAACATTTGACTAACTGATACCTAGGATATATTGTATGTTTCTGTTAAAACAGCTCTTTCTTCATTACTATAAAATAAATTGTATTTTGTGGGCATGAGATTCCATTTGGGACCATAAATGGCTCTGAAGTCTTAGTAAATATGGAAAAGGCATATATAATGACATGACTTGCATCTAACAGTTACTCAAATGAAAGGTTTTTATATTATTTGTGTTCGAGACCATGCAAAACCCCATGGCTGCATCCATGTTAATGTGTTAGGGCTTTGATACCTTCCTGTGTTACAAGCATTTGTTCATATTAAAACCTAGGAGACAATTAGAAATGACGTGATCCGTATAACACTTATGTTTTATGTGAACATTTCTACCCCAACACAATGTCATATGGCACACAATTCCTTTGGTGTTTCGTTTATTGTATTAAAACTATTAATGTTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1662060 lncRNA upstream 42236 43939982 ~ 44040060 (+) True plxnb1b
TU1662018 lncRNA upstream 252098 43829954 ~ 43830198 (+) True G1452472
TU1661972 lncRNA upstream 264528 43817400 ~ 43817768 (+) True G1452435
TU1661964 lncRNA upstream 310461 43768642 ~ 43771835 (+) False G1452428
TU1661965 lncRNA upstream 310461 43768642 ~ 43771835 (+) True G1452428
TU1662067 lncRNA downstream 569 44097852 ~ 44098834 (+) True G1452516
TU1662125 lncRNA downstream 4853 44102136 ~ 44102448 (+) True G1452573
TU1662126 lncRNA downstream 5480 44102763 ~ 44102973 (+) True G1452574
TU1662127 lncRNA downstream 5734 44103017 ~ 44103298 (+) True G1452575
TU1662135 lncRNA downstream 19782 44117065 ~ 44117305 (+) True G1452583
XM_021568531.2 mRNA upstream 7800 43939917 ~ 44074496 (+) False plxnb1b
LOC118940464 mRNA upstream 623093 43458743 ~ 43459203 (+) True LOC118940464
XM_036949948.1 mRNA upstream 624040 43445921 ~ 43458256 (+) True LOC118940465
XM_036949943.1 mRNA upstream 629863 43450554 ~ 43452433 (+) True LOC118940460
XM_036949945.1 mRNA upstream 640260 43441506 ~ 43442036 (+) True LOC118940462
XM_036949954.1 mRNA downstream 1673 44098956 ~ 44148363 (+) False setd5
XM_036949951.1 mRNA downstream 6437 44103720 ~ 44148363 (+) False setd5
XM_036949950.1 mRNA downstream 6438 44103721 ~ 44148363 (+) False setd5
XM_036949952.1 mRNA downstream 6439 44103722 ~ 44148363 (+) False setd5
XM_036949953.1 mRNA downstream 6464 44103747 ~ 44148363 (+) False setd5
TU1661935 other upstream 475515 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 518595 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 590228 43491174 ~ 43492068 (+) True G1452362
TU1661834 other upstream 598603 43482260 ~ 43483693 (+) True G1452359
TU1661374 other upstream 645556 43333515 ~ 43436740 (+) True G1451948
TU1662359 other downstream 415786 44513069 ~ 44520477 (+) True G1452804
TU1663269 other downstream 738714 44835997 ~ 44854739 (+) True G1453605
TU1663579 other downstream 953446 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 972688 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 1161192 45258475 ~ 45259571 (+) True G1454049

Expression Profile