RNA id: XM_036949953.1


Basic Information

Item Value
RNA id XM_036949953.1
length 7119
RNA type mRNA
GC content 0.55
exon number 23
gene id setd5
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44098956 ~ 44148363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATAAATGTCCTGCAGTGGGGGGTGGAGTTCATGGATGAGGGTGTGCCCCCCCCCTGGATAATTTTTATAAATGACTGAAGCTCATTTAAAAATTATTAACATATTGGACTGTCCATTATTTGTGTGGGGCTAAAATGTTTGAATTTGTCCACCGCAGAGTTCATTTTCACTCTCCACTACGTGAGATTACGACACATTGCCAAGTTTACTTTCTTTGGATAGCCTAGCTCATGTGAAAATGGCTAACGTAGGCCTAACCAGCGAAATAAAAATAAAGGTTACAATAAGGGTATAGGCTACAACACAATTGTGGAAACAGGTGCTGCATGAGTGAAATCCCATGTTTGGAAGGACAACAGTGCGGTAGATGGATACACCGCCTACACAAAGTGCAAGCAGgTCTCCCCATGTCCGTGAGCCGTCGGCTGCGGCTCTGCGGCACCCCACCCCTGGAGTGGTCTGTCACTACAGTTCAGACCCCGtgatcccccctctcctcctcccccctgtcccatccccccctccccccccccccccttccccctcctccctgcGTGCCGCTGTGCTGGACGTCATGAGCATAGTAATCGCGCTGGGAGTCACTACACCAGAAACGTCCTACTCAGATATGGCTGCTGGATCAGAccctgaGTCAGTGGAAGCAAGCCCTGCCGTGAATGAGAAAAACTACCCCAACCACAGCTGTGTGAGTGCACAGAGTCATGGGTATCGGGGACTACCATATACTATGCAACAGTCTTCCGTTGTGTGTTGTCAGGATCACAACTATGGCgcgccccctccccccaccccacccGCCTCCCCGCTCTCCCAAACCATCATCCCCCGCATGGAGCTCAACGGCGTGGCACGCGGCCCTACCTCCCGCTACCATGACAACGGCCGCCAAGAGGAGAACTCTGCTGACAGCGACAGCTCGTCGGAGGAAGAAGGGGCCGTGGCCAGCTGGTGCCACTGCAGTCTGACTCCGGATGGCTTCCTCATAAAGTGCGAGAGCTGCAGGGGgctagacaggaggaaaggactgGACGGCCAACGCCGGAAACAAGAAAATGTATCAGTGGGCGATAGCAGCGCCACGGAGAGTGGCGACGAGGAAGTGTCGCCCGCCACGGTGTCCTACACAGCAACGCAGCACACGCCCACCAGCATCACGCTCACAGTCAACCGCGTGAAGCGGAACAAGtccaagaagaggaagaagagcacGGAGAAGGCCCGCGGAGTGCCCAAGGGCAAGAAAATAAAGGCCTTCAGAGAGGGTTCTAGAAAGTCCATGAGGATGAAGaACTCCACTACGGAGGCCAGCGCAGTGGACGAGACCACAGCGGAGGGCTGGGAGAGCCGCATCCGCCAGTGGACGGACCAGTACGAGGAGGCCACGGCCAACCAGTACAGTGCTGACGTCCAGACACTGCTCCAGCTGCACCGCGCCGCCACCGTTACTGTTGCTGCCGAGGGTGTGGTAGTGGGCGATACAACGGCAGCGACGACGACGACCTCACCGGCCCAGGTCAACGCCTCGGCCAATGCCATGGACACAATTAACCGAACGGAGCTGGCGTGCAACAACACGGTGCTTGGCTCTCAGATGCAGTTACAACTGGGGCGGGTGACACGTGTGCAGAAGCACCGGAAGATCCTGCGGGCGTCAAGGGATCTAGAGCCAGACACCCTGATCATCGAGTACCGGGGCAAGGTCATGCTCAAACAGCAGTTTGAGGTCAACGGACACTTCTTCAAAAAGCCCTACCCTTTCGTGCTGTTCTACTCCAAGTTCAACGACGTAGAGATGTGCGTGGACGCGCGGACATTTGGGAATGACGCACGCTTCATCCGGAGGTCCTGTACACCCAGCGCAGAGGTTCGGCATATGATCGCTGATGGCATGATCCACCTCTGTATCTACGCCGTCACGCAAATCCTCAAGGACGCCGAGGTCACCATCAGCTTTGACTATGAGTTCAATAGCTGTAATTACAAGGTGGACTGCGCCTGCTACAAGGGCAACCAGCAGAACTGCCCCGTGCTGAAGCACAACCTGAGCCCACGCGAAACCCTGCTCTGCCAAGCCGCGGGGTCGCTGCCCCCGCCCTCTCAACTCCCGGCACCCTCGGGGGCCGAGACGCGGCGGCGGAAGGCCCagcggagagagatggaggggccAGGTGGCGGCAAGGGACCTTTCGGGATGTCAGATGACAGTAACCAGCCGCccgaggagagtggagaggtccGGGAGACGCTGCAGGGCAACGTCAGCCTGGGCAACAGTgacacagagGAGGCACTCCTAGATGGGGTGAagctggaggaaggagaggaggaagagctgGACGAGAACGGAGTCCTCATCTCTAGTAGGCCGaaGAGGACGCTCAGCACAGGGGCTATAGATGAGTTTAAACAGGAGGGCCTGGAGTCTGCAGAGGGGAGCGGAGGGAACCCCACGGGGGTTAACGCCGCGGCCCACCAAGCAGGGGTGGGGATAAGCACGCGCCGTGCCACCTACGTCACCaatctctctctccaggaaccCTCCTTAGCAGCCGACGCAGACAAGGCCCTGGTGTGTACTGCTCCCCTCCTGGCCCCTCTTGCGATGCCCCCCAAGCCTCCCCCGGCCCGCTCCTCCAAGCCACGGCCTAAGAGCCGCATCTCGCGCTACCGCTCCAGTTCGTCGCAGCGAGCCCGCCGCCAGCGGCAGGCCCTGGCCCTGCAGCAGGCAGCCCTGGAGCAGGCGGTGGTGGCCGAGGGGCAGGAGGGTCCCCTGGGGGGACCCGGGACAGAGCTGAGGCTGGGAGACGGAGCATTGGGAGCTGGGCAACTCCTTGACGGAGAAGGCCTGAGTGCTCTGAACAAAGGCAACCTTCGCAACCTGCCTAAGACTAAGAAGtACCTGGTGACTGAGTGGCTGAACGACAAAGTGCTGGACAAGGTAGTCCTGCAGGAGGCGCCCACGGTGGAGCGGCAACTGCGCATCACCACCGACCCCACGGTGCTGGCGACTACGCTCAACATGCTGCCGGGCCTTGCGGCCTCGCCGCTCATCTGCACGGCGCCCAAACACTACGTGCGCTTCGGCTCGCCTTTCAACCCTGAGCGCCGGCGCCGGCCCGTCAGTGTGGACGCCACCTACGGCTCCTTCAAGAAGAGATGGATCCAACAAGCCCAGGATGAGAGCGGGCTCTGCTCGGGGGGCCTGGAGGACGGCACTGAGTCCACCTCTTCCCACCAAAGTAACAGCAGCAGCTCCACCCCCAACCCTTTCAAAGCCGaactgGCGGCGCCCCCCAAGAAGCGGCGGTCCATATATGGCCCGGAGGTGGAGGCAGCGCCGCCTCTGCCCGGCTCAGAAGAACACGGTCTGCTGCTGCGGCCCCTGTCGCCCATCACTCCCCCGCTGCCGTCGGACCAACCCCTGCCTAGCCCCGCATCCTACGCCGCGCTGCTGGGTTGCTACGGCGACGAGGAGCGCCGGCTGTCCAACGGCATGGTTGCCTACTCGCCACTGCCCTCGCTGCCAACCAGCCGCTGCAACACGCCACTGCAGTTTGAGAACATATCATCTCCAGAGGCTTCTCCTGTGCACAGGCCAGAGTCTATCTCTCCAGAGCCGTGTCTGCAACCGGACGTTGACGCCCCGCGCTGCGCCCTGCAGTTCCCCAACCTGTCCTCGGGCCTCGATGGCCCTGTGCCCGCCATGTCAGACgacttctctctcctcttggcAACGGGGCCTCCTCCCCCTGACACGCAGGGGCAGCTGGCCTCCATGGTGGGCGGGGGAGGCCTCCTCACTCCCCTGGCGCCAAGCACCTTGTCCGAGTCGGCCCAGCAGGCCAGAGAGCAGAGCTTCAGGACTGAGTTCAACCTCATCTATACCTGCTCCCCGCTCAACGCCAACCTGGGCAACCCCGTCACCACCGACAGGCGCCTCAGCCAATCGGAGGGCAGCTTCTCCCCGGCCGAGTCCTTTTACAGCACCGTGAGTGGCCAAGGGCATCTGGCCGAGGCAGGGCCTGGCTCTCTGTCGCCCTACGGCGAGCAGCACTATGGCGGGGGCTACCCAGACAGCGGCACCCCTCCCCATCACACCAGTAACCCACCGCAGAAAAAGAAGGTGTCTCTGCTGGAGTACCGTAAGAGAAAGCAGGGGAGCAGCAGGGACCCAGAGCCCGGGGGTAGCTCCCTGGACACCCGCCCCAGTTCCATCTGTGCCAGCGCCAAGTCTCCCGGAGGCCTCCGTTCCTTCCACCTGCAGCCCCCAGCCTCCCCCCAcagctccttctcctcccccacccACTCCTCCATCCCCCAGATAGAGGAGGTGAGCCCCCCAGATAACCACCACACCGTCGCCCCTGGACCACCAACACAGCAACAGTCCAGGGCTCAGGAAGGCACCAGCCACTGGATGGTGCCCACGACAGTTGAGCGGCTGAGAGAGGGCCAGGGTGTCTTAGAGCGGGTACTGAGGGGCTCCCTCAAGATGGACCGTGTGCTGAAGAGAACGGACTGCTCGGCTACAGACAAGGACCCTGATGCAGACCGGTATGAGATCCAGACGGTACCCCTGGCCTCTCCCATGAAAAGCCCACAGAGATACAGCCCGTCTGTCTACACACACCAGGTGCAGCCCCCCTTATCGGAAGGCCACCAGCAGACAGTGGACAGTCCAGCCTTCCTTCAGCAGAGCGTGTCCTCTCCATTCCGTGGTTCCTACAGTCCCTCGGCTCCCCCTCCCTCAGGCCAGGGCTTCTATTCTCGCCTGTCCTCCCTCTCCGCCCTGTCTCAAGACCCCTCGCAGCAGCATCAACAACAGCCCCTCAACTCCCTGTCCTCCTTCCCCAACCAAACCACCTCCACTGCAGACTCGGCGCTGTGTGGGGCCTCCAGACCGCCAGGAGGCAACCTGCACCAGCCGAGCGGCAGCAGCAGTATGGACGGGTCCCACGTGTACAGTGGCGGGAGCCACCTAAAAGCCAACCTCTTGAACAGCGGGTTGTCAGGGTCTCCCACCCCTGGCTCCAGGGCTCACGGCAACCCTAAAACAGACTTGGGCGCCGGTGCTGTGGGGAACCCGGCGTCCCACCACGCCTCCAGACTGAGCCAGCAGCAGGCGTCCCGGAGCCTGAAACCAGGCAGCCCCGGGCAGACAGTGCTGCAGACCGGCTCCAGGCTCCTGGCGGCCTCCACCGGCCAACACTACCCACAGCGCGGGACACCCCTCAGTCAGTTCCAGCACCCACCCATACAGGGGTCAGGAGTAAGGACACAGTCAGGAAGCTTttaggatgttgtgtgtgtgtgtgtttgcttgagcgtgtgtgtgtgaaattgtGTACCTCCTATCTTAAACCCTGTGGAGAAACTAGGCTTGGGGGAGGGGTTATATACAGACCTAAGAGGAGTGAGGACTTGGCTTCTTGTATGGATTTCTCCttattttctgtctttttttttgttttatctgAAACTAAATTACTGCATTCTAAACATGGCTAATTGAGGAACTTCAACATCATCAAGGAATCAAATGAAAAGAGAAAAAACACATGTTCAACAAAAAAGTGTAATTTGAAATTGCCCTGACATGAACAGACTGTGTAAAACTGGCAAAGTAGATGGTGAAACTCAACCACGACTATCTGTACAAAGTGTTTTCTTGGTTTTTGTTTTTAAAGAAGCGTACCTATTGTTTTGGTTCTGGATTTGTTAATGCTGAGATGGCAGGTGTAACTCAGCAGAGACTTTGTCAAGGTTACTTTTTGGATTTGGCTAGAAGCCGGGTCAGTCCTGCAGTATGTGTTTCGTTTGGAAAGGGGAAACGATACTTGCaaaagtgtatgtgtgtatcatcCATTATAAAGATGCAGAGGGTGGCAAATAAGAGCTGCCTAAAAAATCATTCCTTATGATTTCCAGTTTTTTTGTCTCAAACTTAGCCAATTTCTGAAAACTCTTGATCTGTATTTTACTGTTCAAtgatttttctgctcttttttttttattttgtttcccACGTGACTGTTTTGATTTGATGTATTACTACTTCACAGTAGATTTGCTATATTATACTTGAGTCATACAGATCTTGTAATTCATGGTGCTGCAGTTGTTTTCCTCTAAGTTATTTACATTCAAATCCAGTTATGTTCCGCACTCAACCGGTTGATTCAGCTCATTTGTTATTTGGAATCAAGACTTTTGCCAGAAATGCATCTTAGTAATCGTTAACTTTTTTATTCTGCTGGAGCGAGAAGTAAGAAGCAGAGTACttcatttttctttttttctttactCCGTTGTTGGGTTTGTTGTCTCTTGAATCCTGTCGGATTCTTTTTATGAAAAATGTAttgagaatatatatttttttctctccctctgaccAATCCTTGCATTCCGTATGCCACCTAAGAAAATAAGAGGATAATCTATGGCGGGATTTGTTTGaatggtataaaaaaaaaaaaaaaaaagctgctgTGTTCTCCTTTATTTGTTTTCTTATTTTTACGCGAGTGCTGCTTCAAGACGTTTCCCTTCCCACAGAATGCTGTACCTCCATTTTAGTAGGGTCTTCACCAACTGAATACAAAACAAAAAGATGAAAATCACACTGCGGCGTTAACAAGTCATGTGCCATGATCACTGCAGTGGGACTTTTAATCCATGTTAAATGACATTGCTGATGCACACTGGGAGATGTAGTCTCCTCGTGACAGACGAGACCGCAGGAAGATGGACTTTTAAATGGAACTCGTTCGGACGTTCTAGTTTGGTTGGGAGTAAATGTCTTTGGGGAGCCAGGAACCACACTGGGGCTTTAAGGGAAGGTTTTGAACAGAGGGACTTGTCAGCTTGACCGGACACTTGACCTTTCTTATTGCCTCATCCATAGACAAAGGGTACTCACTTGTTACATGAATGTTTGACCGAAGACTTCAGAGAAATATGTGACACAATATTACCAGCACCTTGAGTGAAGAAAGACAAAACCCTAAAATGAAACAAATGAGAATGTAAGATCATGTGTACTTGTATAAAATGTGTTAAACTGTACAAAGAGAAATATAGTACACTAAATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1662127 lncRNA upstream 449 44103017 ~ 44103298 (+) True G1452575
TU1662126 lncRNA upstream 774 44102763 ~ 44102973 (+) True G1452574
TU1662125 lncRNA upstream 1299 44102136 ~ 44102448 (+) True G1452573
TU1662067 lncRNA upstream 4913 44097852 ~ 44098834 (+) True G1452516
TU1662051 lncRNA upstream 6467 43985916 ~ 44097280 (+) True LOC110493929
TU1662062 lncRNA downstream 513 44148876 ~ 44149942 (+) True G1452511
TU1662066 lncRNA downstream 2311 44150674 ~ 44151034 (+) True G1452515
TU1662141 lncRNA downstream 5114 44153477 ~ 44153848 (+) True G1452589
TU1662148 lncRNA downstream 10806 44159169 ~ 44159387 (+) True G1452596
TU1662149 lncRNA downstream 11557 44159920 ~ 44160159 (+) True G1452597
XM_021568537.2 mRNA upstream 6464 44082296 ~ 44097283 (+) False LOC110493929
XM_021568531.2 mRNA upstream 29251 43939917 ~ 44074496 (+) False plxnb1b
LOC118940464 mRNA upstream 644544 43458743 ~ 43459203 (+) True LOC118940464
XM_036949948.1 mRNA upstream 645491 43445921 ~ 43458256 (+) True LOC118940465
XM_021568544.2 mRNA downstream 123921 44272284 ~ 44315602 (+) False mtmr14
XM_021568545.2 mRNA downstream 123921 44272284 ~ 44315602 (+) False mtmr14
XM_021568546.2 mRNA downstream 176352 44324715 ~ 44545834 (+) True LOC110493933
XM_036949956.1 mRNA downstream 404550 44552913 ~ 44571070 (+) False si:dkey-156n14.3
XM_021568553.2 mRNA downstream 453540 44601903 ~ 44615849 (+) False LOC110493936
TU1661935 other upstream 496966 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 540046 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 611679 43491174 ~ 43492068 (+) True G1452362
TU1661834 other upstream 620054 43482260 ~ 43483693 (+) True G1452359
TU1661374 other upstream 667007 43333515 ~ 43436740 (+) True G1451948
TU1662359 other downstream 364706 44513069 ~ 44520477 (+) True G1452804
TU1663269 other downstream 687634 44835997 ~ 44854739 (+) True G1453605
TU1663579 other downstream 902366 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 921608 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 1110112 45258475 ~ 45259571 (+) True G1454049

Expression Profile