RNA id: TCONS_00046260


Basic Information

Item Value
RNA id TCONS_00046260
length 5249
RNA type mRNA
GC content 0.36
exon number 10
gene id XLOC_023392
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 18880254 ~ 18919649 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCAACCCCTCTGACACCCCGCACCACGTGACCACACTtccaaaaacactttaaaagacTCGGGATACTACCAGAATTCCCACatgagtgctttcacacctctaCCTCAAGGAATCATCCCGGGATCCGACAAACAGTGCAGAATAGCCTCGAAGTGTAATGATTTCCATTCAGCATCCAAAAGCACCGCGCAGCCTCTGACTGTCTGCTGCAGAATCGCCGCTTTTATCCATATTCTAACGTAATATGGCACTGAGAAGCACAGACGTGTCTAGTAACGTTAAGTCTGCTGTTTTACTCGGATGTGTTTTAATTCTCTGCACCGCGCCCAATAATGTGGACTCTTACCTCTATAACAACCGCTACGTCGGTGATCAAGTGTTCAGAATAATCCCCAGCAGTAAACCAGAGGTTCAAGCAGTCAAACAGCTTTTCCAAAACTTGACAGTGGACCTTTGGCAGCCCAACAGTGCATCTTTGATTCGAGAAAACAGCTCAATCGACGTTCATGTGAGACGGGACAAGACGCATTGGCTGAGAAATCATCTTCACCAAGAACACATCTACTACGAGGTGCTCATTTCCAATCTCCAAACTGAAATTGAGAAACAGACGGGGTACCGGTCCTCTAGGAAGCGCAGATCTGAACTTCAGTATGACTATGAAGTGTACCATCCTTTAGAAGAGTTAGGAAAGAGAACACGTTTCTTTAAGAAGGCGGTGTGGATAGACTGTGGAGTACATGCAAGAGAATGGATCGGTCCAGCTTTCTGCCAGTGGTTTGTTAAAGAGGCACTGAACTCCTATCAACACGACTCCAGCATGAGACGACTGATGAATCAGCTCAATTTCTACATTATGCCTGTCTTCAACGTGGATGGTTACCATTACAGCTGGAAGATGGATCGCTTTTGGCGGAAAACTCGGTCAAAGATACCAAAGTATCATTGTCGAGGAGTGGATGCCAATCGAAATTGGAAAGTCAAATGGTGTGATGAGGGTGCATCCCTACACCCCTGTGATGACACGTACTGCGGACCGTTCCCCGAGTCGGAGCCAGAGGTCAAAGCTGTTGCCAAATTTCTTCGTAAACACAAGAAACGGGTGAAGGCCTACATCTCAATGCATGCCTACGCTCAGATGCTCCTCTATCCATATTCCTACAAATACGCCACTATACCAAACTTCAACTGTGTgGAATCAGCAGCCCAGAACGCAGTGAGCGCTCTGTATTCGGCTTATGGCGTGAGATACAGATATGGCCCTGCCTCCTCCACGCTTTATGTGAGTTCTGGAAGCTCGATGGACTGGGCTTATAAGAACGGGATCCCATATGCCTTTGCTTTTGAGTTGCGCGACACAGGATACTATGGATTCCTGTTGCCAGAAGCCCTGATTAATCCAACCTGCACAGAGACCATGAGAGCTGTCAAAACCATCGCTTCAGGCCTGCTCAGAAAATGCACCAAATAAAACTTTCTACATGACTTtcagggtgtgttcacacttgtagtTTGGTTAAAATGGTTCAGTTTGTGTTCAAACTGTCTTTGAACCtaaaacaaacaactaaagaaatgtttttttgatGTACAGTTGGAGATGAAATGATTAGCCTtgctgtaaaatgttatttattaatttttgtaagaCCTTTTGtgcaaaaatcatttttataatgGGTTTCAAAAGTTGTGgtgcaacagtctgtgaatataagcagcttctaatggtaaaaaatgattagttaaattttttatgatcacacttcataaaaagtctgcagaaacactttgattgacattcagcCTTTGTACATGTTGTCAGAGGGAGTAAGCCTCGCCCATCTCGacgtttgtagctccaccctcttttgaaaagagggctgggaacacaatcttatttgaatttaaagcggcagtcaccaaaatggcaccaTTAGCATCAAAAAGGGATTGtgttaaagagttataaaaatatCTATGCGGCACACTCTAGGCACATCAaggacttattttacatcttgaaaAAAGTGGCATAATAGGGTCTCTTTATAACTGCTAAGGTTGATACTATTAGCCtcttaacaaattattatttttcagattGACTACTGTTGTTTAATGACATTACttgttagttatttaaactattgtttttttaaatgtgttggcaatcacttggaaaatatttggaaaaatattacaatttcaaagtagagctaataattctgtgtTCAACTGTATTTCATGTATATTGAGAATAATCAAACATTCAAAACAATGCTCAATGTGCGCCTTGCATGTAATTATTGGTTGATTAAAAAACTAATTAAGAGCTTCTAAAAGTGTGTAAAGACAACCAAACTGCCAGTAGATGCGTTTATGATAACTCTCCTCAACTGTATTTGCAATATTGCAACTAtgaacagacaaaaaaaacagATATGCTTGAGCATTTTGTCCTTTTTGAGTCACATCTTCTGATCTGTTTGTCTGATTCATATTTAAATAGAACCATTTGGAGCTTGTAAATTATCTGAATCGGATCTTTTCAGCAACCCCCATCTGCTTGTTTAATGCACACTAAGGTTTGAATGGCAGCGTTCACACCTGAAGCTTTCTAACAGAGCATTAACAATATGAGTTCATCCAAGAATTTAAAATTACTCCATattcactcaccctcaagtggttccaagtgtcttttttttctgtacaacactaaagaagatatttagaaatatcttgaaaaactgtaaccatcgcatccattctaaataaataatattaagccAATAGTAACTGTTTTctgaaattcttcaaaatatcttcttttgtgttcaacagaagaaagaaactcaaacaggtttgtgacaagtgaagggtgagtgaatgatgacagaattttgagTTTTGGGCAACCTACTTCTTTAAGTCGACTACAGAGTTTTTAGGTCCAAATACTTTATAAGATCCCAAAAGCGAACAACAAAAGGTACTAAATAAATTATGCTCACAGTGTCATAATAGTATCATAATTTCTGGACAGACAGAGATTCATctgttataaattataaatatcagTGTCTGTAACACAGAAAGTCTAGACTCAGCAGACatacaacgtcataagacgttaaaattagattagatttaggtggccagtgtctaaggataatgttattttgacgtccaataatgacgtgaaatgacgttgataatttgttgactttaggttgtgttaggtaatcttaattattttatgttcaatccatttaaatttgtaaaaacaaataaattaacttaattcctacatgttgtcccaacaccaaGCATTGACTTTGTGAAAGACTGGCTTTAATGTGCGATATGAATAAACAGAGTTTataagagagtttttttttttttttttttcaaaattttaataGAGACTTATAGTAGagacttggacccggaagcagAACACCATTTCACAGCTTAACAGTATTgcagtattgtttttaaatcaaatataaaggaaaaagtgtgaacacaccctccCTCTCATTTATCTCGATTTTTACTTCACAAGCCATACAAATGTCTTCAAGCTAAAACTAaaggtttatttttataaactacATAAATCAAGCTCTAAATGAAACAATGCAAATGTAAACTGCAAATTAATGCAAGCACTTGAAATGTGAACAAAATGATGTTTTTTATGAGGCCAAAATAAAGTGAGCACTTGCAAGTTTCAGAAGAACAGTGATGccaatataatgtaaatattgcATACTGTGGTCTTACAGTGGGTTTATTCTGGTGTGGATGCCATGTGTTTCACTTCAGCTAAAATTAAAAGGGAAAAATGCTTTGAAACTAAATGGTGAAAGGTCAACAGGGATCTCAACCTCTCAAATGAGCTAGAAAGGAATACTCAAAGTTGTTGTTTTGGTTGAAAGAAAAGCTTGTCAGAGTGACTTAACTTGTATGAATATATGTTGCAAGTGCAATGTTTACATGTGTACTATCAAGTTTTATTTGCAATAAgctaatatttatttcaaaagaaACATACAGTACATTGTTCTATATATTTCGACTTGCAAGTTGTAATTTGTTATCTTTGTACACAGACCTTTGTATCTTactgtttattttaccaaaatgttGTTTAGTAAAAGTACTTTTATAGCAATATGTTGTAAAGTGGTTTTATGATAATATAATGCTGCACATGAATACAGTTGCCAACATGCTGCATACAAACTTACACAGAGGTTATGATTTGTTGCATGTGGATGACATAAGGTTTAGTGTCCAAATATGATTAAGTTGCAAATTTAGGAATTAACACAATATTGATATACTgtgtgttgcaaaaaaaaaaacttatactgtatatgatagtaaacaaaacataaataaaaacattatcaaccctgtaaaaactgcaaaaaaagtgatATTGTGAAAACAGTGATGTCTAAAGTCATGGAATAGTGCCATACAACTTACtgttagcactgttgccagcAAGTTACCGCAACTGCCCATTTACTGTAACTTACCTgtgaatgtgttttacagtagcagggccctaccacaattttttatttttttttacagtaaatagtCTTACTGCAACTTCTTTTTATGGTAAAATACCCTTTAATGCATCTTAATTTTACAATTTGACTAATTTTAAACTAGTTTTACTgtaattcatttacattttacacttgCAGTATAAAACCTGTATTTTTAGCGTTTACTATGGAATTTAGTAAAATCCATACAACTATTTTTTCATCATGTCTTGTCTTCAACTACAGCAGCAGTGTTTGGTTACTTtgattacagtaaaatacagcaaattcgtaatatgcagtaagttacagtaaacattttaaaatgacccaCAATGAAGTGCATATCACAGTCTGTAAAGAATGTATGTGGTATTATACTGGccgtttttgcagtaaataactgtaaaactaCGGGAAAGTCTCACAGAGTACACTACAGTGCTGCATTGTAGACATGTAACATGTCCCACTTCTGACCTCAATGTGTTCCAGTCAGTCAGATGTCACCATCTCATATTCACCATGTGAGAATATTTCAATACATACTATTTTTTGGTAATTATGCTAAATACttcaaaattaatataaaaagctgtCCATAgctttgaaaaaaaacaacaaatatggTGACATTTAATTTTGCGCTAAGCTATTGTCATTAAAAATGGCC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0004180 carboxypeptidase activity molecular_function
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-091204-331 Enables carboxypeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in extracellular space. Is expressed in several structures, including head; pectoral fin; pectoral fin bud; segmental plate; and tail bud. Human ortholog(s) of this gene implicated in familial febrile seizures 11 and familial temporal lobe epilepsy 5. Orthologous to human CPA6 (carboxypeptidase A6).

Ensembl:

ensembl_id ENSDART00000182518

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046254 lncRNA downstream 311768 18560253 ~ 18568486 (-) False XLOC_023389
TCONS_00046243 lncRNA downstream 413216 18460675 ~ 18467038 (-) True XLOC_023386
TCONS_00046239 lncRNA downstream 433650 18444191 ~ 18446604 (-) False XLOC_023385
TCONS_00046240 lncRNA downstream 433650 18445687 ~ 18446604 (-) True XLOC_023385
TCONS_00046238 lncRNA downstream 435175 18444191 ~ 18445079 (-) False XLOC_023385
TCONS_00046267 lncRNA upstream 788886 19708535 ~ 19709047 (-) False XLOC_023394
TCONS_00046853 lncRNA upstream 1039267 19958916 ~ 19962882 (-) False XLOC_023395
TCONS_00046854 lncRNA upstream 1041223 19960872 ~ 19962882 (-) True XLOC_023395
TCONS_00046271 lncRNA upstream 1090933 20010582 ~ 20012032 (-) True XLOC_023396
TCONS_00046275 lncRNA upstream 1141042 20060691 ~ 20062056 (-) False XLOC_023398
TCONS_00046257 mRNA downstream 3136 18736916 ~ 18877118 (-) False XLOC_023391
TCONS_00046258 mRNA downstream 3377 18738247 ~ 18876877 (-) False XLOC_023391
TCONS_00046259 mRNA downstream 70821 18791213 ~ 18809433 (-) True XLOC_023391
TCONS_00046251 mRNA downstream 195245 18520402 ~ 18685009 (-) False XLOC_023389
TCONS_00046252 mRNA downstream 195245 18520402 ~ 18685009 (-) False XLOC_023389
TCONS_00046265 mRNA upstream 787960 19707609 ~ 19718077 (-) False XLOC_023394
TCONS_00046266 mRNA upstream 787963 19707612 ~ 19718077 (-) False XLOC_023394
TCONS_00046268 mRNA upstream 789220 19708869 ~ 19719240 (-) True XLOC_023394
TCONS_00046269 mRNA upstream 1087062 20006711 ~ 20016817 (-) False XLOC_023396
TCONS_00046270 mRNA upstream 1090403 20010052 ~ 20016817 (-) False XLOC_023396
TCONS_00046256 other downstream 254887 18625252 ~ 18625367 (-) True XLOC_023390
TCONS_00046255 other downstream 281613 18560430 ~ 18598641 (-) True XLOC_023389
TCONS_00046245 other downstream 394763 18470166 ~ 18485491 (-) False XLOC_023387
TCONS_00046247 other downstream 394843 18473781 ~ 18485411 (-) True XLOC_023387
TCONS_00046242 other downstream 423670 18453172 ~ 18456584 (-) False XLOC_023386
TCONS_00046264 other upstream 369005 19288654 ~ 19288768 (-) True XLOC_023393
TCONS_00046272 other upstream 1112682 20032331 ~ 20054257 (-) False XLOC_023397
TCONS_00046273 other upstream 1112691 20032340 ~ 20039150 (-) True XLOC_023397
TCONS_00046277 other upstream 1267667 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046286 other upstream 1530378 20450027 ~ 20531586 (-) False XLOC_023407

Expression Profile

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