RNA id: XM_021568544.2


Basic Information

Item Value
RNA id XM_021568544.2
length 6029
RNA type mRNA
GC content 0.46
exon number 19
gene id mtmr14
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44272284 ~ 44315602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACGTCATTGTCAGGGGGCGATGGTGGTCACGTGCTGGTTTCAATTTCCTGTTTACCACTTGTTCCTTGAGACAGTTCAGTTCAACACTTGCACATTCGTGTGATTTTGATCGAGAACAACAAATACGCATTTGAATCCCTGCAGCTACGGAATTAATCGTTTTGGAAACGTTCATATTTTTCTGTCATCTTTGCCTTGCGGAAATTAAGACGTGACATTGAGGAAACGCGTGACTAGGCCAGGAGTCCTTGAGATTTCCTGAGTCAGGCCCCCGGACTACATGATTGAAGCTCGTAGCGTTAGTATTACTCTGTCAACACCAAACATACGCGTGATGAGGGCAATGACTACAAACAAGTCAGCTGGGTGATCGTCTGCATTCAATTTTAAAGGCTAACTTTTGGTAATGTGGTGGTTTTAACTTGGAGCGTGGATACGTTCTAAAATGAGCTAAGTTAACTAGAtaaagttagctaacgttagtcaacCAAATCATCTACCTCCGGCTAAGTTAGCCACGTTACCTACAGCCTTCTTGCCTGGACAGTTTTGCCTGGAAGATTTAGTTAGACGCCCTTGTTTGTAGAGGGTTCCAACCCGGCGGTGCCCTGCATTCAGGAAAAATACCCGGTTCCGGCCCCTTCAAGCGGGCAGTCAGAAATAAACTGGCTGGGAAGGGATGGCCTGGTGGCTCTTCCCGTTCCCAATGTGCTGCGGTGTTTGAGGGCGGACGAGTTCGGATAGAGCCCAAGGTGGGTCGCGGAACGATGATGGCTGCATCCCCGTCTGTGTCTGGGAGCCTAACGGCCTCCGGACAAACGTTATCCGGCAGAAAGAGCGAGGAAATAGCGGATTTGATAGATTTGTTTTCGAAGACACAGTACAGAGCGAAAGAAGTCTCCCGACGGGTCGAGACGATAGAGAAGCGTTGCTTGGAACTCTTCGGCCGAGACTACAAGTACAGCGTCATCCACAACACCAACGGCGAGGTGTGTGGCCACTACCCACAGCAGATAGTCTTCCTGGAGTATGAAAGCACCGAGCTCCATAAAGACAGGTTTGAGAGCACGGTCCAGATCACCAAGCTGCAGGACCTGGTGAACCGCAGTAAGATGGCCCGCTGCCGAGGGAGGTTCGTCTGCCCAGTCATCCTCTACAATGGCAAACATATTTGTCGGTCGTCCACATTGGCAGGCTGGGGGGAGCTATACGGACGCACCGGCTACAACTACATCTTCTCCGgTGGTACTGATGACACGTGGGGGGCAGAGTCCGAGCCAGAGGTTCCAGAGGACGACGGTGTGAGGAACGGGGACTCTCAGCTCTTTGACAAGGTGCGGGGTCTGGACATCAAGCTGCTGCGCTACCTCTCTGTGCGCTACATCTGTGACCTCATGGTGGAGAACAAGAAGGTTAAGTTTGGCCTTAATGTCACCTCGTCTGAGAAGGTGGATAAGGCCCAACGCTATGCAGACTTCACCCTGCTCTCTGTGCCTTACCCGGGGTGTGAGTTCTTTAAGGACTACAAAGATCGAGACTACACCGCCGAGGGACTAGTATTCAACTGGAATCAGGATTTTGTGGATGCTCCTTTGACAATCCCTGTGTGCTTTACCAAGAACTTGAGTATAAACTGGAGTGAATATCAGTCTTGGGACCTGGTCCATCAGACCCAGAACTACCTGAAGCTGCTGCTTCACATCATCAACAGCGACgATGAGAGCGGTCTCCTGGTTCACTGCATATCTGGTTGGGACCGGACGCCTCTTTTCGTGTCCCTCCTGCGGCTCTCACTGTGGGCAGATGGTGCTGTCCATGCCAGCCTGGAGCCTACTGAAATCCTCTATCTGACAATTGCCTACGACTGGTTCCTCTTTGGTCATATGCTGCCTGATCGTCTCACCAAAGGAGAGGAGattttctttttttgcttCAATTTTTTGAAGCACATTGTCTCAGAGAAGTTCTCTGCCAAGAAGAAACAGAGGAGGAAAAACTCTCAATTCAAAGACACTGATTTCACAGTGGACGACCTCTGCAAGTTGAAGTCCAGGGAGGCCAGGGGCAGCGTGACCAGTTTGAGCAGTGACTTCTCTCTGATCACGGAGGACGCGGGCGGAGCCTCCAGCCTCACCAATGAGGCCGTGGACCTGTTCTCCGGCCAGCCTCTGGGAGCCTCCAGCTGGAGGAAGGGACACACCTCGTCCCCCCAGACGGTGCTGTGGAACCGTCCCGACCCCATGCATGAGCGTCTGGCCCATCCCCTCGGCCAAGAGGCCAAGTCttccagctcctcctcctccaaccaaTCGGAGCAGGGCTTCACACGCGCCGGCAGCAGTCCTATGTCTGTGCCTGGGAGAAGGCTGGCGGCGGAGTACGCCCAATCCGGCTCTTCCCTCTCCATGGACTACGGCAGCTGGCAGCTCGTGTCGGGCTGCGGCTCCATCCACGACCATGGACAGGTCGCCGCCGCCAACGACTCGCCCCTCCCCTTTAGCTTCCAGGACGAGGGGCCCAGCGGACGCATgtgcCCGTCCCCCTCGGAGCGTCAGGTTCGTCTGGAGGCGGTGAGGGAGGTGTTCCTTGCAGCCTACAGCTCCACCGTGGGGCTCAAGTCCAGCGCGCCCAGCCCCTCCGGCGCCATCACAGGCCTTCTGGAGCAGTTTGCCCGCGGCGTTGGCCTCCGGGGCACCAACAGCATCATCTGATCTAGGATTAGGTCACCCACTGCAAATGTGAAATCTGGGCCCGTAGTTAtcgtattcataaagcgtctgagtaggagttctgatctaggatcagtttttcctCTTCGATCAAAATGAATACAATCATATCGGCAGGCATGACCTGATTCTAGATCTAACCTCCTAGGCTCTTTGTGAATAtgttcccctccccctccttcacctCCCTTCCGCTTAACCCCGTCCTGTAACACCTTGTGGTTGAATTGCGATCCACGATCAGCGTTCATTTTGTCGGGGAAATCCACATCCTGTTTCGTATGGTCTTTAATCAAATAAAAAGTGCAAATTTCACTACTCTATCCAGGTGCTGAAGCGtctttaaaaaagcatttttaTAGATATCTATCAAACccagataaaataaaaaaaaatctttccatttttttatttttttttattcatgccTTCCAACTTATTCTCTGGACTTTttcctttttttgtttgttgcacatTTTTTGTCAATTCAGGGAGTGGTTCGGGGGGATAACAATGCCAGCCACAGTATCAAAAAGGGACAGCTGGccattgtataaaaaaaaatgtgcagcATGGTTTAGAACAACTTGTCATTTATCTTTGGTTGGTGCTAAGAATGTGGTCAGAGTACAAAGAACTTTTTACATGGACACCTTTTTTATGTGGAGTTCTTCcttttctgttttttaaaataattatttGGGATTCAACGTGCTGATCGTCCTAAATGGAGGAGACCACCCTTCTCTTTTCTTCAGTGACAAAACTCATGAAAGCTGCTATTCAGTGCTGAATCAAGCGGAAGCATAAACCATATCATTGTAGTGGATACTGTGGTTTACATACAAACAGCACTAGTCAAGTGTGTCAGGGcaacagaacaacagatgtttctTTTTATAACCTAATTCGGCGTAGAAAAGTCTGTCAAGCTGGATGTAGCTTTATTTTGTAGAATGTAATATGTTGAATCCTAAAACACCATCAGTGCAAACCTTTAGCTGATTTTTACAATTGGTTAATTATCTTGAATAATCAAACTTGTGGTCAGATAAGTCACTTATGTGCAGACTTAAAAGCAAAGATCAGTTTAGCATTGTCGCCATACAAAACATTTTTATACGGTTTTCCTATGTTTTAAATTGATTTAAACCGCACATACACACCATTTAGaccggtcccagatctgtttgtgctctcttACGGTAACCAATATGGGATCAAGCTACACCATCATTACTGGTGCTTAAGACCGCAAGCCAGGAGAAGTCAGTCCCATTGCTGGGCTGTGTTAGGTCTTTTAAGGTGCTTGTATTTGAGCCCACTTCTGACAGCTATTCATACGGTCAGTCACTTCATCTCAACTTTTGTCTCTCAGTTTTGTGACATGACGGCTCCAAGCCACACCGCTTTCGGTCTTTGTTATTGCTGTACGTAAGTTTATGGCCTCGTTCCAGGCTGACTACTTTGCAGTAGCCAGATCTCCCAACACATGGATAGGTGTTAAACATATTGACTTACTGCATGATCATCTCTAGCAATATGAAAGACATGGCACAGAACCATTGGTTGATGTGAGCAGTGCGACTGCAATATAAGCAGCCTGGAACACATCTCTTTCTGTGACTTAAGCGCTCTATTGCTGCATGAACAAGTGAACTTGGGGCCTACTTTGGATTAGTTAACTGCCACTGAACAATTGGCCTTTCAGATCACGTGGACAAGTCTTTGGCCGCATTCCAGACCAACTACATCGCGGTTACCTGCCAGATCTCACAACGCCTGGATAGGTTTTTAACATACAGCTAACCGCATTATTTGATATAGCAATCTGATGGCCGTCTGCTAAGTTGGTTGATGCATGCAGCACGACTGCAATGTAGTCGGGCCTGGAACGCGACCACGGGGGAGGTAGCGATTATGCAGGAAAATGGCAGTGTTGTGGCGCCATTGCGTTGAAAGATTCATTTGAGGCAGCACTTACTGTGATTTGTTTAGCTTGTTTGCAACGCCAAATGGTTTTGACGGCTGCTGTACTGTACCTCAGGACCTTTTTTTGTGCCTTTTCAGCGGTAGCAGTGGAAGAGATTCacccttttttaatttttttttttttaaccttttttccAAAGTAATTTCTGTTTCTTATACATTTAAAgagcttgtttttttaaatgctttGGGAGAATCCACAACTAAGAGCTAGCTACTACACTTTAACACATAGCATTGGTCAGTTGAAAGGCAAGCTAATGGCTTAATCCTTCAATCACTTGAATGCaaaatgatttatattttttCAGTCTTtgaccatagacaaacattgaacAATGGCAATTGATCATAATGTACAATATTGTTTCTGCAAAGTCTGTGATCTTTCTGTCAATCAGTTGGGTTTAAGGGGAGATGGGGTGAAGGTTCAGGAATATCGGTGTGAGAAGTTACCTTTTTTTTATAGAGTACTCTCGCTTGTCAATCAGTGTGCAGACTGATGTAGTATTGGGACATCTGGTTTTAACTCATTTGTACATTCTCTGTCTCACTGGATCTTCCAACAGTCTACTTTGTTGGAAGCTTACTTGGCGACTTTCTTTCACTTGTCCAATCCTTTGAAATCAAAGAAAGGAAACTACTTTGGGCCCTCCTCACCTTTCCTGAACATAACCCATCTGGAAGTATTTCAGAGACTATTTAGCAAAAACATTTGAACTACATCGCATCCTGTTATCAAACTTCGATGTGATTTACCACACCAGAGAAATGATTGAAAACCGGCATGTCCATGGTAGGATACATTGGTGACACTTGGGTCTATTCCTAGGTCCCTGTTTGTAGGCAAAAGGCCCAGAGCCCCTAGACAATTTGCAGTTGACACATTCCTTTCAGTTCACACTTTTCACTGggtacattatttacctttagGATTACGCAAGCACCTCACGTGATTGTTCAACTCATCCATGTTTTTGCATGTAATTTCCCCCAACTAATTGAAACTAGTGGAATACACAGTACATGGATACATTTTTCCTAAATTAACCTTCATTTTTAGTATGAttattttcttttgattttacagAAATGCTGCATAGCACTCATCTTCCTTTATTGACGTGTCAATCTCTTTACACAGACATCTTCGAGTTGAGTCATTTTTAAGTCATTTTatcttgttttttgttttaaattGCTCTTAATTCTCGCCAGAGAGAGAATCGGCTACATTGAGAAAGGTGAATTGATATGCAGGTGGTTATTATGaataaagaaaaacaaataaaatgtatgtacaatcA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1662220 lncRNA upstream 2755 44269239 ~ 44269529 (+) True G1452667
TU1662150 lncRNA upstream 52250 44161727 ~ 44220034 (+) True G1452598
TU1662149 lncRNA upstream 112125 44159920 ~ 44160159 (+) True G1452597
TU1662148 lncRNA upstream 112897 44159169 ~ 44159387 (+) True G1452596
TU1662141 lncRNA upstream 118436 44153477 ~ 44153848 (+) True G1452589
TU1662244 lncRNA downstream 20646 44336248 ~ 44342620 (+) True G1452690
TU1662316 lncRNA downstream 145569 44461171 ~ 44465402 (+) True G1452762
TU1662334 lncRNA downstream 170715 44486317 ~ 44486556 (+) True G1452780
TU1662338 lncRNA downstream 173947 44489549 ~ 44489759 (+) True G1452784
TU1662377 lncRNA downstream 243582 44559184 ~ 44571064 (+) True si:dkey-156n14.3
XM_036949954.1 mRNA upstream 123921 44098956 ~ 44148363 (+) False setd5
XM_036949951.1 mRNA upstream 123921 44103720 ~ 44148363 (+) False setd5
XM_036949950.1 mRNA upstream 123921 44103721 ~ 44148363 (+) False setd5
XM_036949952.1 mRNA upstream 123921 44103722 ~ 44148363 (+) False setd5
XM_036949953.1 mRNA upstream 123921 44103747 ~ 44148363 (+) False setd5
XM_021568546.2 mRNA downstream 9113 44324715 ~ 44545834 (+) True LOC110493933
XM_036949956.1 mRNA downstream 237311 44552913 ~ 44571070 (+) False si:dkey-156n14.3
XM_021568553.2 mRNA downstream 286301 44601903 ~ 44615849 (+) False LOC110493936
XM_021568555.2 mRNA downstream 453874 44769476 ~ 44794940 (+) False LOC110493938
XR_005036987.1 mRNA downstream 531515 44847117 ~ 44858271 (+) True LOC118940467
TU1661935 other upstream 665503 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 708583 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 780216 43491174 ~ 43492068 (+) True G1452362
TU1661834 other upstream 788591 43482260 ~ 43483693 (+) True G1452359
TU1661374 other upstream 835544 43333515 ~ 43436740 (+) True G1451948
TU1662359 other downstream 197467 44513069 ~ 44520477 (+) True G1452804
TU1663269 other downstream 520395 44835997 ~ 44854739 (+) True G1453605
TU1663579 other downstream 735127 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 754369 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 942873 45258475 ~ 45259571 (+) True G1454049

Expression Profile