RNA id: TU1662211


Basic Information

Item Value
RNA id TU1662211
length 2176
lncRNA type sense_over
GC content 0.41
exon number 1
gene id mtmr14
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44272284 ~ 44315602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAAAGATCAGTTTAGCATTGTCGCCATACAAAACATTTTTATACGGTTTTCCTATGTTTTAAATTGATTTAAACCGCACATACACACCATTTAGaccggtcccagatctgtttgtgctctcttACGGTAACCAATATGGGATCAAGCTACACCATCATTACTGGTGCTTAAGACCGCAAGCCAGGAGAAGTCAGTCCCATTGCTGGGCTGTGTTAGGTCTTTTAAGGTGCTTGTATTTGAGCCCACTTCTGACAGCTATTCATACGGTCAGTCACTTCATCTCAACTTTTGTCTCTCAGTTTTGTGACATGACGGCTCCAAGCCACACCGCTTTCGGTCTTTGTTATTGCTGTACGTAAGTTTATGGCCTCGTTCCAGGCTGACTACTTTGCAGTAGCCAGATCTCCCAACACATGGATAGGTGTTAAACATATTGACTTACTGCATGATCATCTCTAGCAATATGAAAGACATGGCACAGAACCATTGGTTGATGTGAGCAGTGCGACTGCAATATAAGCAGCCTGGAACACATCTCTTTCTGTGACTTAAGCGCTCTATTGCTGCATGAACAAGTGAACTTGGGGCCTACTTTGGATTAGTTAACTGCCACTGAACAATTGGCCTTTCAGATCACGTGGACAAGTCTTTGGCCGCATTCCAGACCAACTACATCGCGGTTACCTGCCAGATCTCACAACGCCTGGATAGGTTTTTAACATACAGCTAACCGCATTATTTGATATAGCAATCTGATGGCCGTCTGCTAAGTTGGTTGATGCATGCAGCACGACTGCAATGTAGTCGGGCCTGGAACGCGACCACGGGGGAGGTAGCGATTATGCAGGAAAATGGCAGTGTTGTGGCGCCATTGCGTTGAAAGATTCATTTGAGGCAGCACTTACTGTGATTTGTTTAGCTTGTTTGCAACGCCAAATGGTTTTGACGGCTGCTGTACTGTACCTCAGGACCTTTTTTTGTGCCTTTTCAGCGGTAGCAGTGGAAGAGATTCacccttttttaatttttttttttttaaccttttttccAAAGTAATTTCTGTTTCTTATACATTTAAAgagcttgtttttttaaatgctttGGGAGAATCCACAACTAAGAGCTAGCTACTACACTTTAACACATAGCATTGGTCAGTTGAAAGGCAAGCTAATGGCTTAATCCTTCAATCACTTGAATGCaaaatgatttatattttttCAGTCTTtgaccatagacaaacattgaacAATGGCAATTGATCATAATGTACAATATTGTTTCTGCAAAGTCTGTGATCTTTCTGTCAATCAGTTGGGTTTAAGGGGAGATGGGGTGAAGGTTCAGGAATATCGGTGTGAGAAGTTACCTTTTTTTTATAGAGTACTCTCGCTTGTCAATCAGTGTGCAGACTGATGTAGTATTGGGACATCTGGTTTTAACTCATTTGTACATTCTCTGTCTCACTGGATCTTCCAACAGTCTACTTTGTTGGAAGCTTACTTGGCGACTTTCTTTCACTTGTCCAATCCTTTGAAATCAAAGAAAGGAAACTACTTTGGGCCCTCCTCACCTTTCCTGAACATAACCCATCTGGAAGTATTTCAGAGACTATTTAGCAAAAACATTTGAACTACATCGCATCCTGTTATCAAACTTCGATGTGATTTACCACACCAGAGAAATGATTGAAAACCGGCATGTCCATGGTAGGATACATTGGTGACACTTGGGTCTATTCCTAGGTCCCTGTTTGTAGGCAAAAGGCCCAGAGCCCCTAGACAATTTGCAGTTGACACATTCCTTTCAGTTCACACTTTTCACTGggtacattatttacctttagGATTACGCAAGCACCTCACGTGATTGTTCAACTCATCCATGTTTTTGCATGTAATTTCCCCCAACTAATTGAAACTAGTGGAATACACAGTACATGGATACATTTTTCCTAAATTAACCTTCATTTTTAGTATGAttattttcttttgattttacagAAATGCTGCATAGCACTCATCTTCCTTTATTGACGTGTCAATCTCTTTACACAGACATCTTCGAGTTGAGTCATTTTTAAGTCATTTTatcttgttttttgttttaaattGCTCTTAATTCTCGCCAGAGAGAGAATCGGCTACATTGAGAAAGGTGAATTGATATGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1662232 lncRNA upstream 4934 44308221 ~ 44308447 (+) True G1452679
TU1662228 lncRNA upstream 18254 44294920 ~ 44295127 (+) True G1452675
TU1662227 lncRNA upstream 26520 44286589 ~ 44286861 (+) True G1452674
TU1662220 lncRNA upstream 43852 44269239 ~ 44269529 (+) True G1452667
TU1662150 lncRNA upstream 93347 44161727 ~ 44220034 (+) True G1452598
TU1662244 lncRNA downstream 20692 44336248 ~ 44342620 (+) True G1452690
TU1662316 lncRNA downstream 145615 44461171 ~ 44465402 (+) True G1452762
TU1662334 lncRNA downstream 170761 44486317 ~ 44486556 (+) True G1452780
TU1662338 lncRNA downstream 173993 44489549 ~ 44489759 (+) True G1452784
TU1662377 lncRNA downstream 243628 44559184 ~ 44571064 (+) True si:dkey-156n14.3
XM_036949951.1 mRNA upstream 165018 44103720 ~ 44148363 (+) False setd5
XM_021568546.2 mRNA downstream 9159 44324715 ~ 44545834 (+) True LOC110493933
XM_036949956.1 mRNA downstream 237357 44552913 ~ 44571070 (+) False si:dkey-156n14.3
XM_021568553.2 mRNA downstream 286347 44601903 ~ 44615849 (+) False LOC110493936
XM_021568555.2 mRNA downstream 453920 44769476 ~ 44794940 (+) False LOC110493938
XR_005036987.1 mRNA downstream 531561 44847117 ~ 44858271 (+) True LOC118940467
TU1661935 other upstream 706600 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 749680 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 821313 43491174 ~ 43492068 (+) True G1452362
TU1661834 other upstream 829688 43482260 ~ 43483693 (+) True G1452359
TU1661374 other upstream 876641 43333515 ~ 43436740 (+) True G1451948
TU1662359 other downstream 197513 44513069 ~ 44520477 (+) True G1452804
TU1663269 other downstream 520441 44835997 ~ 44854739 (+) True G1453605
TU1663579 other downstream 735173 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 754415 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 942919 45258475 ~ 45259571 (+) True G1454049

Expression Profile