RNA id: XM_021568546.2


Basic Information

Item Value
RNA id XM_021568546.2
length 4899
RNA type mRNA
GC content 0.44
exon number 20
gene id LOC110493933
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44324715 ~ 44545834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatgacggtgcggtgccacgttgaaagtcattgagctcttcagtactggccattccactgccaatgtaTTCCCAAACCTGCATCCTTTTTTTGCAATAAGGTACTGAAGTAAAACTGCCCAAAAATTGGTGAAgtaattaactttatgtcctgaatacaaagcgttgtgGTTGGGGAAAATCCATGACttagtaccactcttcatattttcaagcatggtgttggctgcaTCGTGTTACGGGTATGCTATTCATTGGCAATGACTAGGGAATTTTTTTATGattaaaataaatggaatagagctaagcacagtcaaaatcctggaggaaaacctggttcagtctgctttccaacagacactaggagacaaaatcacctttcaacaggacaataatctataacacaaggccaaatatacatatAGTTGCTTACAAATGTGACATTGGATATTCCAGAGTGGCTGAGTTACCGTTCTGACTTAattcggcttgaaaatctatggcaagacttgaaaattgctgtcatgcagctcaattaaaaaaaataaaaaatgggcaaatattgtacaatccaggtgtgcaaagctctaagagacttaaccagaaagactcacaactgtaatcgctgccaaaggtgattctgacATGACATAACACTCAGGGGTGTGGATTcctatgtaaattagatatttctgtatttaatattCAATACATATGCAAAAACAAGTTTTCACTATGGGgtatgtgtgtagatgggtgaaaaatactgaatcaattttgaattcaggctgaaacaacaaaatgtggaataagtcaatggggtattaatactttctgaaggctctgtatgtgTGCTGTGCATGTATGTACTGTAATAGAATATAGGCTATGTATGTGAAATgtgtatgtaggctatgtgtatgtatttgtatgtatttatttttctggattttcttgGCATTTCACTGTCTATCTAGGGACAAGCACTGATAATTAGCGCAAGCTAATGTGTTATGGTGCAATGCATTTTACTGTTGTAAATGTATCATTGGTATTGCAGCTCTCCCTACCCAAATGATATGATCATAATATAATTCATTATATGCAATTGTACTTCTAATCCTatttgatctttttttttttaactacagTACACAGTTGAGCTGCATAGACCACACACTCCAAATGCATTTGAACTTGAAATCCAACATTCTGCTTGCAGCAACTTCCCGAAAGTCTCTGCCTCCACCTGCTGATGGATAAGTAAAAGTACGGAGCGAAGGACCTCTATATgtgcactctctcgctctctagcttTCGCTCTCTCCTCGATGAATGAAATCCACCATCGCCACACCTCCAAGCAAGGACTGTCTCGAGCGCTGCCACTTGTCTCAACCACAGGTATGCGCCTCTCACTCAACTCTGCGAAGACGTTAGTCAACAAATGCCGATACTTGGTGCTTTTATCAAAAAAATTCCCATGTGAATGAATGGAACATATTTTCAAACAAGATATCGCTCAAGAGTATTTGCTGAACATAGCTGAGAAGTTCACATTTGTGAATAACTGATTTAAAGCCTGACCATGGCGACAATTGGAGATTTCGACCCGCTCAACTCAACGGTACCTGCGACCAAGATTGAAGTTACAGTCTCGTGCAGGAACCTGCTGAATATGGACACTTTCTCCAAATCAGACCCTGTTGTAGTGTTGTACGTTCAAGGCATCGGGACAAAGGAGTGGAGAGAGTTTGGCCGAACGGAAGTGATTGAGAACACGCTGAACCCGGACTTTGTGCGGAAGTTTGTCCTGGATTTCTTCTTCGAGGAGAAGCAGAATCTTCGCTTTGATGCGTACAATGTGGACACCAGAAGTTCAAACATTTCAAAACATAAGGACTTCCTGGGCCAGATGTTCTGCACTCTGGGGGAGATCATCGGTTCCACAGGCAGTCGGCTGGAGAGAATCCTCTCtgggaTCCCAGGGAAAAAGTGTGGGAACATCATATTCACCGCTGAGGAACTGAGTAACTGCAGGGACATTGCTACCATGCAGCTGTGTGCCAACAAGCTGGACAAGAAAGACTTCTTCGGCAAGTCAGACCCATTCCTGGTCTTCTACCGCAGTAATGAAGACGgaacGTTCACCATCTGCCATAAGACGGAGGTGGTAAAGAATACTCTGAACCCTGTGTGGCAGCCCTTCACCATCCCTGTACGAGCCCTCTGTAATGGAGACTATGACAGGACAGTCAAGGTGGACGTGTATGATTGGGACAGAGATGGAAGTCATGACTTCATTGGCGAGTTCACCACCAGCTACAGAGAATTCTCCAGAGGCCAGAGCCAGTTCAACGTCTATGagGTTCTAAACCATAAAAAGAAAGGCAAGAAGAAGAAATACATCAATTCAGGGACAGTCACACTGCTGTCCTTTAAAGTGGAGTCAGAATACACGTTTGTAGACTTCATCCGGGGAGGGACGCAACTCAACTTCACAGTGGCCATCGATTTCACAGCGTCTAATGGTAACCCATCCCAGCCCACCTCTCTGCACTACATGAGTCCCTACCAGATGAATGCCTACGCAATGGCCCTGAAGGCTGTGGGGGAGATCATCCAGGATTACGACAGTGACAAGATGTTCCCTGCCTACGGCTTTGGAGCAAAGCTGCCCCCGGATGGCAAGATCTCCCATGTCTTCCCACTgAACTCCAACAGTGAGAACCCAAACTGTGTGGGTATCGAGGGAGTGTTGGAGGCCTACTTCCAGAGTCTCCGAACTGTTCAGCTCTACGGGCCCACCAACTTTGCTCCTGTCATAAACCAGGTGGCACGGTGTGCTGAGGATGTGACTGACGGATCCCAGTACTTTGTCCTTTTGATGATCACAGACGGAGTCATCTCAGACATGGTGCAGACCAAGGAGGCTGTGGTCAATGCTGCCGCTCTGCCCATGTCTATCATCATAGTGGGAGTGGGTCCTGCTGAGTTTGATGCGATGGAGGAACTGGATGGTGACGAGGTCAGAGTGTCCTCTAAGGGGCGCATTGCCGAGCGAGACATAGTCCAGTTTGTGCCTTTCCGGGACTACATAGACCGCCAGGGCAACCAGGTGCTGAGCATGGCACGGCTGGCCAAGGACGTGTTGGCAGAAATCCCTGAGCAGCTGCTGGGTTTCATGAAGACAAGAGACATCGAGCCCCGGCccgcctcctccaccaccactaccaccccgCCAGGACTCCACAAGCTGCGCATCTGAGAGAGGGGTTTGGGTGGGGGTCTTTGGTTCTTGGGTTTAGAGACATTGTTTGGACCATTTTCAGTTGCAGCAAATACctgaagagacacacactgaaGCCGTTGGGgtacacatacgcacgcacacacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacactgcagtagcGATTTCCTGCCTGGTGAACACCGCCATGCTGTGATGTAACAACTGTACAGCTTAACAAGGGTCAAATGGAGCATGACCTTTGGAGTGAGAGCTGTTGGAATTGCTTCCGTGGTTGCCAACCCCTCACTGACCCCTTAGCTTCTTTTTATATGCAGGGGTCAAGGAACAGTCACCGTTAAACGTTGTAAAAAGCAAGGGTTTGTGGGCTTCTCAACAGACAGAAAGAGCGATCGATGTTCACCTTTTTTCCTATGCCTCACTAGCCACGCATGCAATGGGTGTTTCATTCTCACATCTTTTGTGGTCCAAACAGAAACAAATTGGCCACTTGGGTTGCAATGGCAGTACTTTACTTTATCCACTCTCTGGCCaatgtatatgtccatgtgtatAATGACACTGTACAAACATTGAAGAAAGTGCGACAGCCGGTTAATATCCAAAACAAGTGAAAGGCACAGAAAGTCTATTCATGTTTGGTTTCTTCTCAGGGCATTTCTGAAAGCTTTTGGATGAGTTTCGCAAAACAAGGGAGACGGTAACAAGATGACGTCTCTGGACAGTTGAGGTCTCAGCCTCGGCATCTGGAGTCATTGGGTGTTTCTCAAAATGCATACTACCGTGCTCCGAGCACACACATTGGAGCACGGGAGGGTCATAGTATGAGTTGAAATCAAAGTATGCGAAACGGAGCACAGAGGGCACTTCTGGAATGTGTGCTCCTTTTGTACTTATTTTGAAGTATGCATCAATGCAAGCTTCAACGGAAAGTATGCAAAGAAATATGATGCAACCACGTAAAAAATGACATAAAATGTATTGAAATCAATGGTGGCCATTATTTGAGCTGAAGCGAGAGAAAATACACTCCTATTCAGAATGAAATGTTGCTtattcacatctcatatgttgcctgaCTATAATATTTTATTTTGATACGTACGTTAATAAATACAGGCGGTGTTCATTTTGCCATGTTTATCTGCCTACATACCATATATCACATGCCCATAATAGGtcaatagggctaactggctagcaactagtactgttagctagccagatagccacaAATAATTGTTAGCTAGCAACCCACAAAGAATATATCTCACATAATATTAGTTTTAGATCATTTTTGCATGTTAAAATATCTGGTTAGCTACATTATTATGCTAGCTGATAGTTATGAAGTAAAAAggttgctttgtgtatatcttgtttcGTTACTATTGCCATTGTTGACCTGACTGGAAGACGGTTCAGTGAATGGGTAAGTCCATAGTAAGtcaatagggctaactggctagctagctagccatgaaGAATTGGTAGCTACCAATgaaatatgtacagttgaagtcgggagtttacatacaccttagccaaaaacatttaaactcagtttttcacaattcctgacatttaatcctggcaACAa

Function

GO: NA

KEGG:

id description
K24523 CPNE5_8_9; copine 5/8/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1662211 lncRNA upstream 9159 44313381 ~ 44315556 (+) True mtmr14
TU1662232 lncRNA upstream 16268 44308221 ~ 44308447 (+) True G1452679
TU1662228 lncRNA upstream 29588 44294920 ~ 44295127 (+) True G1452675
TU1662227 lncRNA upstream 37854 44286589 ~ 44286861 (+) True G1452674
TU1662220 lncRNA upstream 55186 44269239 ~ 44269529 (+) True G1452667
TU1662377 lncRNA downstream 13350 44559184 ~ 44571064 (+) True si:dkey-156n14.3
TU1662379 lncRNA downstream 25415 44571249 ~ 44571912 (+) True G1452821
TU1662386 lncRNA downstream 26927 44572761 ~ 44573379 (+) True G1452827
TU1662993 lncRNA downstream 62841 44608675 ~ 44608890 (+) True G1453368
TU1662995 lncRNA downstream 64385 44610219 ~ 44610431 (+) True G1453370
XM_021568544.2 mRNA upstream 9113 44272284 ~ 44315602 (+) False mtmr14
XM_021568545.2 mRNA upstream 9113 44272284 ~ 44315602 (+) False mtmr14
XM_036949951.1 mRNA upstream 176352 44103720 ~ 44148363 (+) False setd5
XM_036949956.1 mRNA downstream 7079 44552913 ~ 44571070 (+) False si:dkey-156n14.3
XM_021568553.2 mRNA downstream 56069 44601903 ~ 44615849 (+) False LOC110493936
XM_021568555.2 mRNA downstream 223642 44769476 ~ 44794940 (+) False LOC110493938
XR_005036987.1 mRNA downstream 301283 44847117 ~ 44858271 (+) True LOC118940467
XM_036949962.1 mRNA downstream 350129 44895963 ~ 44930156 (+) False LOC110493942
TU1661935 other upstream 717934 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 761014 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 832647 43491174 ~ 43492068 (+) True G1452362
TU1661834 other upstream 841022 43482260 ~ 43483693 (+) True G1452359
TU1661374 other upstream 887975 43333515 ~ 43436740 (+) True G1451948
TU1663269 other downstream 290163 44835997 ~ 44854739 (+) True G1453605
TU1663579 other downstream 504895 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 524137 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 712641 45258475 ~ 45259571 (+) True G1454049
TU1663824 other downstream 789460 45335294 ~ 45336523 (+) True G1454127

Expression Profile