RNA id: XM_036949956.1


Basic Information

Item Value
RNA id XM_036949956.1
length 4855
RNA type mRNA
GC content 0.53
exon number 10
gene id si:dkey-156n14.3
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44552913 ~ 44571070 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGGTTTGAACTGTGCAATAAGATACAAATAGTTCCATTCCATCGGTTTGTTATCCATCCATTCCGGCCACGGTTTACGATAAACTTTGGCGTTGCTTACCGGCTCGCCTTCCCCATTTGTGGGAAGGGCGGGCCTTGTATGCACTGCAGCCTGCTACAGGGATACCAAGATGGAAATCCAGGGGCTTTCTGATGCCCAAAACATTTACTATCAACATGGCGCCCCACGTAGAACAGGCTCGTCTCAGTTTAGGACAACGACACTTTCTCGCTCCATTTCGAACGAGAACGAAGCAGAGGACAATTTGGAATCGCACGAACtgcaaagcaacaacaacaataggCCGAGGACATCTCCATTTCGCCTGCTGGTAGAAAATGGCAGCGGTGTTTGCCTGCCCGTCTGCAAGCAGGACGGTAAAAATAATAGCCCTCTTCAAGCCCAAACAGCGAGTGTGGGACTCCGTAACGTGAATACTTTGAAAGAAAGGGAGCTAAACACACAACTGCCTCCACAAGATTTGAGGACGGGTTACAAATATGATGTTGAAAGTGGGGATAGCATATTGCAAATGGCGTTGCCTTTCTTTGAGGGGGAAGAGGAACATTCGCAGCAACTGCAAACTGCGGTTTTACGGCAGCAACATGAAGACGGCGCCTCCCTGTTGCAGTCATTGGCGAGCGAGAGCACGGCGGCCTACAGGAGCAACACCACGGTTAGCGCGAATAAAAACACAGAGGGATTGTATGTGGTTTTCAACATTGTCCAAGAGGATGGAAATGACACAAATAAAGACAGACTGGGGAATCCATCCAAAGATGGAGATACAATAATCGGTAAGAAGCCTGAAGATTCCAAAATCATTCCATGTAATTCGATGGAGGTTCAAAACACCAATACCCTTATTGAATCAGACGAGAATTTGAACAATTTAGCAGGCAGGGCCTTGAAAATAACTGCTCCTCAGTGTAGTGCATTAATTTCAAGCTCAAATAGTGAGGGTGAGGCAACTGTACCGAATGAAAAACAGTCTATGTGTTATGAAACGGAGAATGAAAACGCTGTTTTGACAAACGAATATGGCGATAACATATGCGGCCACCTTGACAACATTGACAGTGGCGCGGCAGACGAATTACTTTCTCAGCCCGAAGCTAGAGAACGCAGTGCCTTGATTTCAGAAAACACCTATATCGTGGAAATGAGCGACACGATGGACACTTCCGACTTCATTTCCGACCCTGGAACGAGCCTCTCTGCTTCCGCCAATGCAGATGGGGCCTCTGCCAACGAGACTTTCTCTGGAACCATCATGATAAACAACCAAAGCATCATAGTAACCATAGAAAACGGGATACTGACTCTAGCAGCACCTCCAGAGGGTTACACCCACAAAGATGACGGAATGGTCGGCTTGAAGGAACACCTTGGAATGAAAGACAATGAGGACATAGTGCTTCTCAACTATGACAGCGGGACCAAATCCATTGGGAAAATCAGCAATGTGGCAGTTATTCGGACTGGTCACCACGAAGAGCCTAGGCTTGGCATGTCCGCAAGCGACTCCGAACTGGCTCTGGCTGACCACTGTTCATTGTCAGAGTTTGGCGCCTCTCTGGACTCGTGCCCAGTCATCAAGCAGGAGAGTGGGACACTGTGTGCCATAAGCGAGGGTGACTTGGTGTCCCTGCGCCCAGAGGGTTCTTTCGTCGACTGTGTCGACAACGACGACTTCCAGCCTGTCAGCTTCATCGGTGCTTCAGGACTCTCCAAGAAAGGTGCCTTAGTCACAACGTACCGCTGCCCCCAGCCCGGCTGCCTCAGCACCTTCGACGCGCGCCAAAAGGTCAAGATGCACCTTCTCAACCACACTGAGGACCAGAGGCCCTTCAAATGCACCTTTGAGGGTTGCAGCTGGGCCTTCACCACCTCCTACAAGCTCAAACGCCACCTCCAGTCTCACGACAAGGTGCGGCCACACAAGTGCGAGTGGGAGGGCTGCGGCCGCCGCTTCACCACGGTCTACAACCTGAAGGCGCACGTGAAGCAGCACGACCAAGAGAACTCCTTTGTGTGCAAAATCTGCAGTGAGCGCTTCCGCAGTGCCACCCGGCTGACCAATCACCAGCGGGCCCATTTTGAACCCGAGAGGCCACACAAGTGCGAGTTTCCAGgtTGTGAGAAGACCTTCATCACCTACAGTGCCCTATTCTCCCACAACCGCACACACTTCCGCGAGACGGGCCAGTTTACCTGCACCTATCCGGGCTGCGACAAGCGCTATGACAAGGCCTGCCGCCTCAAGATCCACATGCGCAGCCACACAGGCGAGAGGCCATTCATCTGCGATTCAGAGGCCTGTggctggtccttcaccagcatgtCCAAGTTACTTAGGCACAAAAGGAAGCATGATGACGACAGGCGCTTCACCTGCCCAGAGGAGGGCTGTGGAAAGTCCTTCACCCGGGCAGAGCACCTCAAGGGCCACAGCATCACCCACCTGGGCACCAAGCCCTTTGAGTGCCACGTAGATGgTTGCAGTGCCAAGTTCTCAGCACGGAGCAGCCTGTATATCCACTCGAAGAAGCACAAGCAAGACGCGGGTAGCCTGAGGACGTGTTGCCCCGTGGCCAACTGCAGCAAGCACTTTTCCTCCCGCAGTAGCCTCAAGAGCCACATGCTCAAACACCACCACCTCAGCCCCGACGTGCTAAGCCAGCTGGAGGCCACACCCACGCTGACCCCCAGCAGCGAGCTGGTCAGCGGAGCCACTGCCACAGGAACTGGTTCGGGAGTCACCGGAAGCGACCAGCTTGCCAACCTGGACCTCAGCTCCCTGTTCTCTGCTGTGCTTGGGGGTCCTGCGCCCACCACCCACGGGGTCGGGGTGCCCGTGGGCAGCGCAGGGCCAGCAGGCTCCTTCGCCATGGACTTGTCCCTGGTCAGCTCAGGCATCCTCACCATCGACCCAGCCTCGGTTGGCACCGCCCTGGGCACGTCCGGGCACGGTGCTACCAGGGCCAAAGCCTCCGTGGACCCGCTAATCCTGGCGGCAGGGGCGGACATGGGCCACCTGGAGGGGACAGTTGGAGTCCTCCCCCCGCAGGGCACACTCAACCTGGACGACGTGCAGACAGTCACCCCCGAAGCCCTCAGCTCCCTTACGGCCCTCACCATGCAGGCTGCCACATCCACCGCAGACcatcatacactcacacacaccctcagttCCTCCAGCACATTGGCTGCCGAGCCCTCACCCCTGGCTGCGCCCCCTGGGCCCAAGCTCCTCTCGTCCCCCTCTAAGGTGACTGAGGCTGGAGGGAGCAGGGGTGGCAGCGGGCCTCTCTTGGGctgtgtggaggtgctggggcAGCAGGAGGGGGGCAAGGTGCTGACCCAGTTTGTGTTCCCTGGCAGTGGCTGCACGTTCAGCCCACAGAAAGAGCCTGAGCTCAGCCACAGCTCGGCAGTCTCGCCCTGCTCCTTCCTGGAAAGTAGTGGCTCAGCGCGGACTGACTACAGAGCTATCCAGCTGGCCAagaagaggaaacagagaggcCCCACCGCCTGCTCAGGGAGCTCAGGATTGGGTCAGAGGAAGAGTAAAGGCGGCAAGGCCAGCAGTGCCTCAGCGCCATTGGTTCCCACAAGCGCCCGTTTTGGGGAAGGTTCTGCAACTGCCAATGGGGGGCTGACTATCCGTGACCCTGTCACCGGAGCCCAGTATGTGCAGATCCAACTCTTGCAGgacgaCCCTCCCAGCGACGGAGATCTAGCCTTCCAGCTGAGCTCCCAGCCCTCCAGCTCCCACTCCCAACTCACCGTGGACCTTCCCGTCAACATCCTACAGGAACCTCCTGCTTTGACAGAGGATGACAATGGCTCGGACAACTCCCAGTTCACAGGAAGCACCATCAACCTGCAGGACCTGGAGTGAGGAGTAGAAGGGAGGAGATGGTCAGCCCAGAGCCAGGGATCAATGTCCTCTGAGAAAGATGAGGGCTAGTGGGGCGCTAGAGAAAATGGTGGATAATTGGGAGGCAGCGTTTTAACCCAAGACATCCACCGTCCCCTGCCAACTCAACAGAGAAAACAACCTCACTCTCTCCAACAATGTTATGAGACTGATGTTAAAACAACATCTTCCCCTACAAGAAGATGGTTTCTTAATCTTTCCTGCATTCAATGTTTCTGATTATCTCTGGTGTGGGGAAACGCGAGATGAGAAAGTTCTGTATATCTGGGGTGTGGATGAAGTGGAACCCAGAACCAAATGCACCTTGGGATGAATTGAATCATAAATAAGGGAAAGTTACATTTGGGGACTTTATTTCTCTCACTTTATACTGTATTTCAGAAATCCCTTTTTGTACCACAATCATTATTGCGAGAGACTGTTGTGTTATTGCACATCCAGTAGGTCCCTCGTGTCTCTTGTCAAACTGACGTTTTGTCAGTCGCCGCTACGGTGCCATATTCCAGCCACTCGTTCGCAGTGTGCTGTTGTCAGAGCTTCTGTCTAGGAGGCCTTATAGACATGAAATACTTTACTCCCAGAACCATTGAGCATATGCTTTTTGTTAGACTTTTATTTTGTTCTTACTATTTtcttttgggggagggggggggtagatTTATTTTTCTACTGCTGTGTCTTATATGAACTACGGTTGAGTGAGACTTGAGCGGTCCTTGTTGAAAACATGTTGCCGGTCCACTTGTTTATAATGTCTAATGCTTATCAATATGTCATGACTTCCATCTACTTGTTATTTATTATCTTTGGTTTACCAAATGGCTGAATCCAAACGCCAAGAGTTTGAATAAACGATCAAAGCACAATTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1662338 lncRNA upstream 63154 44489549 ~ 44489759 (+) True G1452784
TU1662334 lncRNA upstream 66357 44486317 ~ 44486556 (+) True G1452780
TU1662316 lncRNA upstream 87511 44461171 ~ 44465402 (+) True G1452762
TU1662244 lncRNA upstream 210293 44336248 ~ 44342620 (+) True G1452690
TU1662211 lncRNA upstream 237357 44313381 ~ 44315556 (+) True mtmr14
TU1662379 lncRNA downstream 179 44571249 ~ 44571912 (+) True G1452821
TU1662386 lncRNA downstream 1691 44572761 ~ 44573379 (+) True G1452827
TU1662993 lncRNA downstream 37605 44608675 ~ 44608890 (+) True G1453368
TU1662995 lncRNA downstream 39149 44610219 ~ 44610431 (+) True G1453370
TU1662997 lncRNA downstream 40555 44611625 ~ 44611828 (+) True G1453372
XM_021568546.2 mRNA upstream 7079 44324715 ~ 44545834 (+) True LOC110493933
XM_021568544.2 mRNA upstream 237311 44272284 ~ 44315602 (+) False mtmr14
XM_021568545.2 mRNA upstream 237311 44272284 ~ 44315602 (+) False mtmr14
XM_036949952.1 mRNA upstream 404550 44103722 ~ 44148363 (+) False setd5
XM_021568553.2 mRNA downstream 30833 44601903 ~ 44615849 (+) False LOC110493936
XM_021568555.2 mRNA downstream 198406 44769476 ~ 44794940 (+) False LOC110493938
XR_005036987.1 mRNA downstream 276047 44847117 ~ 44858271 (+) True LOC118940467
XM_036949962.1 mRNA downstream 324893 44895963 ~ 44930156 (+) False LOC110493942
XM_036949961.1 mRNA downstream 324897 44895967 ~ 44921015 (+) False LOC110493942
TU1662359 other upstream 32436 44513069 ~ 44520477 (+) True G1452804
TU1661935 other upstream 946132 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 989212 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 1060845 43491174 ~ 43492068 (+) True G1452362
TU1661834 other upstream 1069220 43482260 ~ 43483693 (+) True G1452359
TU1663269 other downstream 264927 44835997 ~ 44854739 (+) True G1453605
TU1663579 other downstream 479659 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 498901 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 687405 45258475 ~ 45259571 (+) True G1454049
TU1663824 other downstream 764224 45335294 ~ 45336523 (+) True G1454127

Expression Profile