RNA id: TU1662377


Basic Information

Item Value
RNA id TU1662377
length 1454
lncRNA type read_through
GC content 0.47
exon number 4
gene id si:dkey-156n14.3
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44552913 ~ 44571070 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTCAGTTGAGATAAGATGTTGTTATTTTTCCTCGTTTCTTTACATGTTCCGAGTTACGGCAGTTGTTTCGTGTGTCACGTTTTTCCCCATCTGCCTTGTAGGAAAGTAGTGGCTCAGCGCGGACTGACTACAGAGCTATCCAGCTGGCCAagaagaggaaacagagaggcCCCACCGCCTGCTCAGGGAGCTCAGGATTGGGTCAGAGGAAGAGTAAAGGCGGCAAGGCCAGCAGTGCCTCAGCGCCATTGGTTCCCACAAGCGCCCGTTTTGGGGAAGGTTCTGCAACTGCCAATGGGGGGCTGACTATCCGTGACCCTGTCACCGGAGCCCAGTATGTGCAGATCCAACTCTTGCAGgacgaCCCTCCCAGCGACGGAGATCTAGCCTTCCAGCTGAGCTCCCAGCCCTCCAGCTCCCACTCCCAACTCACCGTGGACCTTCCCGTCAACATCCTACAGGAACCTCCTGCTTTGACAGAGGATGACAATGGCTCGGACAACTCCCAGTTCACAGGAAGCACCATCAACCTGCAGGACCTGGAGTGAGGAGTAGAAGGGAGGAGATGGTCAGCCCAGAGCCAGGGATCAATGTCCTCTGAGAAAGATGAGGGCTAGTGGGGCGCTAGAGAAAATGGTGGATAATTGGGAGGCAGCGTTTTAACCCAAGACATCCACCGTCCCCTGCCAACTCAACAGAGAAAACAACCTCACTCTCTCCAACAATGTTATGAGACTGATGTTAAAACAACATCTTCCCCTACAAGAAGATGGTTTCTTAATCTTTCCTGCATTCAATGTTTCTGATTATCTCTGGTGTGGGGAAACGCGAGATGAGAAAGTTCTGTATATCTGGGGTGTGGATGAAGTGGAACCCAGAACCAAATGCACCTTGGGATGAATTGAATCATAAATAAGGGAAAGTTACATTTGGGGACTTTATTTCTCTCACTTTATACTGTATTTCAGAAATCCCTTTTTGTACCACAATCATTATTGCGAGAGACTGTTGTGTTATTGCACATCCAGTAGGTCCCTCGTGTCTCTTGTCAAACTGACGTTTTGTCAGTCGCCGCTACGGTGCCATATTCCAGCCACTCGTTCGCAGTGTGCTGTTGTCAGAGCTTCTGTCTAGGAGGCCTTATAGACATGAAATACTTTACTCCCAGAACCATTGAGCATATGCTTTTTGTTAGACTTTTATTTTGTTCTTACTATTTtcttttgggggagggggggggtagatTTATTTTTCTACTGCTGTGTCTTATATGAACTACGGTTGAGTGAGACTTGAGCGGTCCTTGTTGAAAACATGTTGCCGGTCCACTTGTTTATAATGTCTAATGCTTATCAATATGTCATGACTTCCATCTACTTGTTATTTATTATCTTTGGTTTACCAAATGGCTGAATCCAAACGCCAAGAGTTTGAATAAACGATCAAAGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1662338 lncRNA upstream 69425 44489549 ~ 44489759 (+) True G1452784
TU1662334 lncRNA upstream 72628 44486317 ~ 44486556 (+) True G1452780
TU1662316 lncRNA upstream 93782 44461171 ~ 44465402 (+) True G1452762
TU1662244 lncRNA upstream 216564 44336248 ~ 44342620 (+) True G1452690
TU1662211 lncRNA upstream 243628 44313381 ~ 44315556 (+) True mtmr14
TU1662379 lncRNA downstream 185 44571249 ~ 44571912 (+) True G1452821
TU1662386 lncRNA downstream 1697 44572761 ~ 44573379 (+) True G1452827
TU1662993 lncRNA downstream 37611 44608675 ~ 44608890 (+) True G1453368
TU1662995 lncRNA downstream 39155 44610219 ~ 44610431 (+) True G1453370
TU1662997 lncRNA downstream 40561 44611625 ~ 44611828 (+) True G1453372
XM_021568546.2 mRNA upstream 13350 44324715 ~ 44545834 (+) True LOC110493933
XM_021568544.2 mRNA upstream 243582 44272284 ~ 44315602 (+) False mtmr14
XM_021568545.2 mRNA upstream 243582 44272284 ~ 44315602 (+) False mtmr14
XM_036949952.1 mRNA upstream 410821 44103722 ~ 44148363 (+) False setd5
XM_021568553.2 mRNA downstream 30839 44601903 ~ 44615849 (+) False LOC110493936
XM_021568555.2 mRNA downstream 198412 44769476 ~ 44794940 (+) False LOC110493938
XR_005036987.1 mRNA downstream 276053 44847117 ~ 44858271 (+) True LOC118940467
XM_036949962.1 mRNA downstream 324899 44895963 ~ 44930156 (+) False LOC110493942
XM_036949961.1 mRNA downstream 324903 44895967 ~ 44921015 (+) False LOC110493942
TU1662359 other upstream 38707 44513069 ~ 44520477 (+) True G1452804
TU1661935 other upstream 952403 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 995483 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 1067116 43491174 ~ 43492068 (+) True G1452362
TU1661834 other upstream 1075491 43482260 ~ 43483693 (+) True G1452359
TU1663269 other downstream 264933 44835997 ~ 44854739 (+) True G1453605
TU1663579 other downstream 479665 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 498907 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 687411 45258475 ~ 45259571 (+) True G1454049
TU1663824 other downstream 764230 45335294 ~ 45336523 (+) True G1454127

Expression Profile