RNA id: TU1663227


Basic Information

Item Value
RNA id TU1663227
length 4128
lncRNA type sense_over
GC content 0.42
exon number 3
gene id LOC110493938
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44769476 ~ 44797689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ActgcacacatccacacacaattTTACTTACCCATAGCAGTTGTCTTGCACACTTCCTCCGACCTAGACAGGGTCAACTCCAAGTCAGCCAGAGTTCTGGTCTTCCTGGTGGTTCCGGGTCACCTGCTCTTCCTCTACACCATCCACTTACTGAAGGGCGGCCACGGCGCCCTCACGTCTGCCTTCGTCTGCCTATACCTGTGTGCAGCCCTGCTACAGGTGGTGATTCTGCTATACACGGCTGACCTGATGATGCGCTGGATGTGGCGGCGGGGGCTGGACCCGGACAACTACTCTATCCCGTACCTCACGGCTCTGGGGGACCTGTTGGGCACCGGCTTCCTGGCCCTGACATTCAGAGCCGTTCTATTGGGCATTTCCTCTGGGATGAAGGGGGTTTGAGAGAAGGGGCTAATCCATCAGCCTATTTCTGTCCAACATGGTCTTATTGAATATATTCAAATAGAGACATTTAGCTATTGTAGTTATATGTCAGTTATGCTGACGTATTATATGTTGTTCTGTTCATCCATAAGGAACTCTGTTCAGGTCATATTTAattgataatgccagagaagacAATGTTCAGAGGCTATATTGGCAGGgttgttgttaggcccgagacgaaatgccaatatatcctccataCACTGGCTTCGAGaacattatcacttttatacaacaggttaccaacatattcataTAATGATTGACATATATGAAttaaaaacgtcattttcatgaatttattcataccatTTCATCCTTCTACAAGATATAATCCCGACATAAATCTAGGGTTACTATCCAAGCCGTTCTATCGGTTCgattgccagagacgcgacccagtcgttcgttctaaatgttccactGCCATACTGACTGGCAACATTCTTattccttgcttgctagctagccaattagtgctaacttacagtcaagtcaaaaagtgcagccagaacaacagcaaagtagttgcatttgcatttgtttaagctgttttcaaaagacatttatttggatacatccataacaatgagctaatgaggtacGATTTCGCCAGGCATAGAAATGTGCTCAGgccactgttgttcagaggagctagccaacaacacagctaacacaatcacttcaaactgaagctggaaagccTGAAAACTAGCTGCACTTGGTTTCGTTTGACCTTGTTTCAatttacatttatttgtatataaccataaaaatgatgccagctgattcattaTTTCGACTGGCTAAGACACGCTTCCCGTCTTGTCCCATTCattactaaatcaaatcaaattttattggtcagatacacatggttagtagatgttaatgcgagtatagaaaaatgcttgtgcttctagttccgacaatgcagtaataaccaacgagtaatctaacctaacaattacaaaactactaccttatacacacaagtgtaaagggataaagaatatgtacataaagatatatgaatgagtgatggtacagaacggcataggcaagatgcagtagatggtatcgagtacagtatatacatatgagatgagtaatgtagggtatgtaaacaaagtggcatagtttaaagtggctagtgatacatgtattacataaagatgcagtagatgatatagagtacagtatatacatgtacatgagtaatgtatggtatgtaaacattatattaagtagctttgtttaaagtggctagtgatatttttccatcaatttccattattaaagtggctggagttgagtcagtgtgttggcagcagccactcaatgttagtggtggctgtttaacagtctgatggccttgagattagaagctgtttttcagtctctcggtccctgctttgatgcacaagtactgacctcgccttctggatgatagcggggtaaacaggccgtggctcgggtggttgttgtccttgatgatctttatggccttcctgtgacatcgggtggtgtaggtgtcctggagggcaggtagtttgtccccggtgatgcgttgtgcagacctcactaccctctggagagccttacggttgtgggtggagcagttgccgtaccaggcggtgatacagcccgacaggatgctctcaattgtgcatctgtagaagtttgtgagtgcttttggtgacaagccggatttcttcagcctcctgaggttgaagaggcgctgctgcgccttcttcacaacgctgtctgtgtgggtggataaattcagtttgtccgtgatgtgtacgccgaggaacttaaaacttactaccctctccactactgtcccgtcgatgtggataggggggtgctccctctgctgtttcctgaagtccacaatcatctcctttgttatgttgaggttattttcctgacaccacactccgagggccctcacctcttccctgtaggccgtctcgtcattgttggtaatcaagcctaccactgtagtgtcgtccgcaaacttgatgattgagttggctatttgggcggtaagcaaattggagtgggtctagggtatcaggtagggtggaggtgatatggtccttgactagtctttcaaagcacttcatgatgacggaagtgagtgctacgttcattactatgggacagctgaagatcaaatttgaatattgaaacaatgttgcaaatgtcgaagagacagacaggaaggtttatacaaatctccgctgttgaaaacgaaATGTTAGTCTACAAGAAACATGAGAATGTCTAAATGCTTTTTATAGttgagatcaagtttataaattgcttggctggggTTGATGAGACaatggattgcgcagtcagatggaacagagtaaatagacaTTTTAACTTTttatagatttagccggtggtaacttgtggaatagacaccggctggaatgctgttttaaccaatcagcattcaggattagacctaCCCATTGTATAAACAACTGTATGCAAGTGGCTGGATTTAAGAAGTGAGGGAGAAAAGATTCAACAACATAGTTTACCGACAACCACCAAGCTTGACTTCACATAGTCTTTAGTCTCCGATAATGAATGAATGCAGCTGGACCTCCCGAGTGTCTAGCGATCTAAGGCAGtgcatcactacagatcctggttcaatcccaggctgtgtcacagccggtcATGACCGGGATACCCATGAGGTagtacacaattggcccaggatcgtccgggttaggggagggtttggccggccgagttgtccttgtcccattgcgctctagctcTGGCGCAATGCATGCTGACACGTTCTCCAGGTGTTTCCTCCGATCCTACGgatctcgaccttcacctctcccgagtctgtacggcaGTTGCAGTGATGGGAAAAGACAATggagaaaaatgggtaaaaaaaaaggtGTATTTTTTTTATGCTGCTAAGGGAGTACCTGTATACTGTAGCTCAATGTGCTTTGAGCACCCAATAACCATATAGAACTGTTGAAGTGCTCTTATGTCTGTAAATGCTTCATAGTAAACTGGCAAATGCACTGTACTGAAGCAATAATGTTGTCTGTAATGTTGTCTGTTGTCTTGTTTTGTTGACTGTCTATACATTTATACTCATGCTCAAAAATGGTCACAACTGCACTCTCTGGATGTACACAATATTAATCAATAGATGACATGGGGTGTATCCAGTGTCACAATTTCAATGATCAAGCACTGCTATTTTCATTTGTCCCTTCAACCCATTACTGTACAAGCTAGAGGAGTCATGTATTTTTTATGACATCAACAATGTTGCTTATTAGTCAGTTAGTCTGCCACATTTAATTGTTTTAAAAATTCATGTTTGTATGAATGTATCTAATACCACTGCTTGACATTGTTCACATTTCccaatgatacatttttttgtgcaTAAAATAAGTCTTATGATTTCTCTTCAAATAAATCATCCCTTTTAAATAAATGAATACGCACTTTTAAAAACAGCTTAAATCATATTAGCTGTTCTGCATTGAACATGACAAAATGACTTCTATAAATTGTATAGAATCGTATTTTAAATTGTACAGGACACATGTTGACTTAGTATGTATGCTAATGACTCATCTGACTAGAGCATACCTAGAGCAGGTTATTTTAGTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1663211 lncRNA upstream 36841 44748201 ~ 44752126 (+) True G1453573
TU1663213 lncRNA upstream 38177 44748104 ~ 44750790 (+) False G1453573
TU1663197 lncRNA upstream 43229 44745509 ~ 44745738 (+) True G1453568
TU1663192 lncRNA upstream 49344 44739308 ~ 44739623 (+) True G1453563
TU1663173 lncRNA upstream 63608 44725116 ~ 44725359 (+) True G1453544
TU1663277 lncRNA downstream 22018 44819707 ~ 44819991 (+) True G1453612
TU1663302 lncRNA downstream 90702 44888391 ~ 44888641 (+) True G1453637
TU1663326 lncRNA downstream 150798 44948487 ~ 44948877 (+) True G1453661
TU1663334 lncRNA downstream 231678 45029367 ~ 45029564 (+) True G1453666
TU1663335 lncRNA downstream 233528 45031217 ~ 45031471 (+) True G1453667
XM_021568553.2 mRNA upstream 173118 44601903 ~ 44615849 (+) False LOC110493936
XM_036949956.1 mRNA upstream 217897 44552913 ~ 44571070 (+) False si:dkey-156n14.3
XM_021568546.2 mRNA upstream 243133 44324715 ~ 44545834 (+) True LOC110493933
XM_021568544.2 mRNA upstream 473365 44272284 ~ 44315602 (+) False mtmr14
XR_005036987.1 mRNA downstream 49428 44847117 ~ 44858271 (+) True LOC118940467
XM_036949962.1 mRNA downstream 98274 44895963 ~ 44930156 (+) False LOC110493942
XM_036949961.1 mRNA downstream 98278 44895967 ~ 44921015 (+) False LOC110493942
XM_036949963.1 mRNA downstream 105800 44903489 ~ 44921015 (+) False LOC110493942
XM_036949964.1 mRNA downstream 106252 44903941 ~ 44921015 (+) True LOC110493942
TU1662359 other upstream 268490 44513069 ~ 44520477 (+) True G1452804
TU1661935 other upstream 1182186 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 1225266 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 1296899 43491174 ~ 43492068 (+) True G1452362
TU1661834 other upstream 1305274 43482260 ~ 43483693 (+) True G1452359
TU1663269 other downstream 38308 44835997 ~ 44854739 (+) True G1453605
TU1663579 other downstream 253040 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 272282 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 460786 45258475 ~ 45259571 (+) True G1454049
TU1663824 other downstream 537605 45335294 ~ 45336523 (+) True G1454127

Expression Profile