RNA id: XM_036949962.1


Basic Information

Item Value
RNA id XM_036949962.1
length 2474
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC110493942
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44895963 ~ 44930156 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCATGATGTCTATCGACTGATTTTGAGGAAAGCTAGTGTCCGTTTAACTGCAAGACAAGCTTTTTTAACACGGCCGACACAAATGTTACATGGGTATAGCaaagtcatgtgtgtgtgtgtgtgtgtgtgtgtgggagagagagagtcctgtctGACATTTGTACCGACTCTTCTGCTCTCCACCCCTAAGTACTTCAACAAAGATATAAGCACCAGAGCAGTGATTTCACAAGAGGAAGCAGTAGCAGACCAGAGTGAGAGAAGAAACTATGGCAGAGAACAAGATGGGGCAAAACATTGGGGCTGGGGCTGGAATTCTTGCCAAACGAGTACAAAAGTCATTGAATCGTGCTCAGGAAAAGGTCATGCAGAAGCTGGGGAAGAACATGGAGACTAAAGATGAACAGTTTGAGCAGTACTCCCAGAACCTTCTCAAACAACAGAATGATGGGGGAAGACTATTCAAAGAAGTCCAAGCGTACTTCCGCGCAGTGAAAGTGATGCATGAGACATCCAAGCGACTGTCCCAGACGTTAAGAGACGTCTACGAACCTGACTGGCAGGGAGGAGAGGACCTGTCTGTCATCATGGAGAGTGAGGACTTGCTGTGGAATGATTACGAAGAGAAACTAACAGACCAAATAGTCCGCACCATGGAGAATTACACTGGCCAGTTTCATGAAGTCAAGGAACGATTGGCCAAACGCGGTCGGAAGCTAGTAGACTACGATTCCTCACGTCACCACTTGGAGGCGCTGCAGAATGCCAAGAAGAAAGACGATGCCAAAATCACAAAGGCAGAGGAGGAGTTCAACATAGCCCAGAGTGTGTTTGAGGAAATCAACAAAGAGATGAGGGAGGAGCTTCCTGTTCTCTATCAAAGCCGGATTGGCTGTTACGTGACCGTCTTTCAAAACATTTCCAACCTGAGGGATGTCTTCTATAAGGAAATGAGCGTGCTGAACCATGAGCTTTACAGTGTGATGAAGAAGCTGGAGACTCAGCATTCAGGAAAAGCGTTCATCATCAAAGGCCTCAATAGCACCAAGTCCAAGAAGAAGAAATCCCTGCTCATCTCAGCACCCATCCCCTGTAACACTGCCTTCCCCTCGGACCACACATCCCTCCATGCATCCGCAGCCCCCGAAAACAGCAAAGAGACTGTCCTGTCCAGCCACGAGACCCACACCCAGAGCATCTCTGAGGAGCACGTTTCCCTCGTAGGAGAGGCAGATGAGGGCACTCACAGCGTCCTCACGTCAGAAACGTCCGACTTCTCAGACGAGCTTAGCTCCAACGGCGCTGCTACGCCCAACAGACGGTCGGCGTGTGACAGCGACAACGGGGTCGGAAGCGACATCGCATCAGAGGGTCTGAGTGATGTCCCAGAGGGTGGGGCTTCAGAGGAGCAGGGCCCTAGCCAATCCGTCGGAAAAGGGCAAGTTCAAAGGTCAGAGGTGACTGGGTGTGAAGTCACAATCAGTCAGGAGGCTCTTCCAATGTCCACAGAGAGCGACGGACCACATGACACTGAGCAGGAGAGTGCGCCTGTTTCTCCAGATAATGGTAAAGCCAAGCCCCCACCTCGTCCTGCTCCACGCTGCTCCTTCCCCCCCTCTGAGAGGCACTCCTTCCCTCCTGCGGAGGCCAGCCAGGTGGAGACGAAGGTGGAAGAGGGAGAAGGGGCTTCCCAGGCCCTGCAGGGAGTGGCGCTGGAGGGTCACGCTTCAGAAGACGGGACGCTGCAGTTTGATGTGGAAGACGTGATTCTCATGTTCGCCGACACAGAGGAGaaggaaatggcttcctggattccCCCAAgtagctgattggtcggccccattgCAGATTGGAGCTCTGATCCCGCCCTCTCGTCAGGAGATACAGCTGTCTGCAATTACCGACTCCTTCTGCAGCTTGAAAAGACAGTGTTCCTTTGTCAGGAAGAGAGAGCTTCTtggatgtcctgtgttggttgttgctcagagacagtgttgttgtaaaGTATTTCGTAGCCACTACTTCTGAGGTATGTGTGTGCCAATAGAATTGTGTTTTTGATTATTGAAATTGTGCACTTTAAGTTTCTATTATACTGTTTCAGTtcttcccaggggggaaggggaaggcacattgggagtgcttaggcaagaggcctgtgGGCATACAAATACCCTTAGTATGTactctgtctatgcacactaggtaagacctgggcggcccaccccctgtattttggttagtgctTCAGGTGGCGTTAAGTTTAGGTAAGTCGtgggtaaggtaggagaggggaccatccagccccttttccccacattaatcaaaatcaaatcaaatgtatttatgtagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcagtgcaggtgttgaagcacgttacATTAccttaaggaaataaattcccagTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1663302 lncRNA upstream 7322 44888391 ~ 44888641 (+) True G1453637
TU1663277 lncRNA upstream 75972 44819707 ~ 44819991 (+) True G1453612
TU1663227 lncRNA upstream 98274 44788967 ~ 44797689 (+) False LOC110493938
TU1663228 lncRNA upstream 98274 44788967 ~ 44797689 (+) True LOC110493938
TU1663211 lncRNA upstream 143837 44748201 ~ 44752126 (+) True G1453573
TU1663326 lncRNA downstream 18331 44948487 ~ 44948877 (+) True G1453661
TU1663334 lncRNA downstream 99211 45029367 ~ 45029564 (+) True G1453666
TU1663335 lncRNA downstream 101061 45031217 ~ 45031471 (+) True G1453667
TU1663567 lncRNA downstream 112277 45042433 ~ 45042916 (+) True G1453879
TU1663574 lncRNA downstream 115840 45045996 ~ 45049214 (+) True G1453885
XR_005036987.1 mRNA upstream 37692 44847117 ~ 44858271 (+) True LOC118940467
XM_021568555.2 mRNA upstream 101023 44769476 ~ 44794940 (+) False LOC110493938
XM_021568553.2 mRNA upstream 280114 44601903 ~ 44615849 (+) False LOC110493936
XM_036949956.1 mRNA upstream 324893 44552913 ~ 44571070 (+) False si:dkey-156n14.3
XM_021568546.2 mRNA upstream 350129 44324715 ~ 44545834 (+) True LOC110493933
XM_021568566.2 mRNA downstream 39322 44969478 ~ 45029092 (+) True LOC110493946
XM_021568567.2 mRNA downstream 133526 45063682 ~ 45069411 (+) False LOC110493947
XM_021568568.2 mRNA downstream 133530 45063686 ~ 45069411 (+) True LOC110493947
XM_036949966.1 mRNA downstream 149450 45079606 ~ 45087749 (+) True LOC110493949
trnaq-uug-4 mRNA downstream 423322 45353478 ~ 45353549 (+) True trnaq-uug-4
TU1663269 other upstream 41224 44835997 ~ 44854739 (+) True G1453605
TU1662359 other upstream 375486 44513069 ~ 44520477 (+) True G1452804
TU1661935 other upstream 1289182 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 1332262 43541664 ~ 43563701 (+) False G1452369
TU1661837 other upstream 1403895 43491174 ~ 43492068 (+) True G1452362
TU1663579 other downstream 120573 45050729 ~ 45051005 (+) True G1453889
TU1663604 other downstream 139815 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 328319 45258475 ~ 45259571 (+) True G1454049
TU1663824 other downstream 405138 45335294 ~ 45336523 (+) True G1454127
TU1664577 other downstream 926093 45856249 ~ 45858501 (+) True G1454824

Expression Profile