RNA id: XM_021568568.2


Basic Information

Item Value
RNA id XM_021568568.2
length 2602
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110493947
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45063682 ~ 45069411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAgtcagaggggcgctgtttccctcaCTCAGATGATTTCTCCAGTGAGATTCAGCCAATTGCGAATTGATGGAAAATGATGAAAACgcagagagacgaaagataaatAATTGTatcattgttattttttttattggtcAAACCTGggttcccttggcatccatgaatacacaccattGACTGCACTAGATTGCAAAAATAAGATATTCCCAATAGCATGTCTTGCagggggacttttattttgaaacagTCCGCGATCATGGTGGCAGCATAATATCCTGCTGCTAGGAGAACTATAATCATCTGTTTAGCTAGCTTGAGTCGAACAGAGGTGAGTTTCTCAAAATAAGGCACTTGTTTTTAAACGTTGAAgttattgttttttcccccccattCTACTTGTAGCGTGTCACCTGTCCCCAATGGGGTTCAATAAGACGTACATCAGTATCGGGTATGCCTCTTTTGGCATGCTTATGGGATTCTCAGCGTTTCTCGTGTGGAACATCGCGTACAACCAACCATGGACAGCTGCAATGGGAGGATTATCAGGTGTGCTGGCGCTCTGGGCCCTCATCACCCACATCATGTACCTGCAGGACTACTGGCGCACCTGGCTGAAGGGCCTCAAATTCTTCCTCTTCATCGGAGTCGTCTTCTCCCTGCTGGCCGTGGTGGCTTTCATTACCTTCCTCTCCCTTGCCATTACCAACAAAGAGTCCATGACTGACCCGAGGAGCCTGTTTCTTTCGGGCGTGTGGAGCTTCATGACTCTAAAGTGGTCCTTCCTGCTGGCTCTCTATTCCCACCGCTACCGCAAGGAGTTTGCCGACGTCAGCATCCTCAGTGACTTTTGATGAGGGCCCTTGAacagcccccccccacccaatGGAGGTCTATGGAAGACTAACTAGCAGGGCTCCTAACCTGAGGGTGCTAactaggggagaagggagggagtgaAGATTTGAGGGGTTGGTGAAGCCAAGTAGTCATGACGAGGATGAGTGATGGAATGAGGGTTGATCTGAAAGGCGTGGGGTAGCTGCACATACACCAGATGTCTTCCACCAATCGCTTGCTTATAAATCCACGTGGGGAGAGTGAACGAGTACACACTTTGGGGAGAAGGGTAGTGGGGAGAAGGGTAGTGAATCGGAACGCAacctgtgtgttgtctgtgttaatgggAGAATTAGTACCTGGACCTCTGTCCATGCCCGCACCTTCTCGGTTagatcccccccctctctctttctatatctgTAAACAGGGTATGCTCAACCCCTGCTAGGCCAGTCTATCCACAAGTTCATCCCTATGTTATGCCTTTTATGGATTTGACTGTTccaatgtgtatgtatgtgacaCTGTCTGTGCTCCTCTTGTATGTCTTCGACATGTTTTTAGAGTCAATATCTCCCTTTTTATGAGATTTGAATCTTCTTTTTGGTGACTTTGTGGGTAATCCTTGTTAATTGTGTACATCACGTGTgaaaactcattccacggagggcctagtgtctgcgggttttcgttcctcccttgtacttgattgatgtaggtcactaattagtaaaaaAAACTCCTTTCACCTGGTTGCCTCTGTTGTAATTGAAAGGAAAACcccaaaacctgcagacactaggccatTCGTGGAATGAGTTTAACAACCCTGCTGTACATCTTCCTGTGCTTATATACCTAGGAACATATTCTTaacaagatatatatatatatataattgatgTGGTTATGATAGAGAATTTGTTTCCATTCTCTTGCCACAAGGGGGAGTCAGTCGATCAAATGTTGCGGCTGTTGGTAAAACACCCCACTCATTTAGAAAGTTGTTAGAAAACAGAGCAAAGTTTATCTCCACacatataaaacatgcattataCACAACAAAAGGACACGTCACAGGCCTGTTTGGGGAAATCCTagtagtcttttttttttttttttttggatgaCTGTTTTGATCTGTGTTATCGATGTGTGAACTTTTAGTCCACAGAAACCTGCTGTCACCTCGGAGTCAGTGTATGTGCTGAAGCAACTACATTTAGAGTATCATGTCTTAACACTTATGTATTATGAAACGGTTATAATGCTTTGGAAATGAGACTTGTATAATGTCTTATAGCGTTACACCTGTCAGTGTTCGACACTATTTCAAAACATCCCCCAAAAATAGTTTTTGAAGAGATTATATGAAGAAGGATTGCACTACCATCACAGAATGTTAGAACAACTGCCTTTTTTTCACAGCAGTTGCCAATGGAAACCCAACTGCCTCGTCTTATTTGAACGGAGAACGCTCAAAGGAGGGAGCTCCTTTTGTGGAATTTGTGTCATTGCTGTGCCTTCGCTTTAGCTCGCAAACGTTATTCACCATCATCATACTGCTGCTTATGGAGATTAATTTGATTGTGCTCTAACTTTTTTTCCCCCTTGACATCTGTTTTCTTCTCTGTGGGCTACCACATGTATCACATTGTACTATAAAGAAACATGACATTGTGTATATCCACATGTATGTCTGTTGTACAGGTATGTCTGTGTGAGAGCCATAATAATAAAGTATAATTTTATGACA

Function

GO: NA

KEGG:

id description
K15380 SLC48A1, HRG1; solute carrier family 48 (heme transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1663574 lncRNA upstream 14472 45045996 ~ 45049214 (+) True G1453885
TU1663567 lncRNA upstream 20770 45042433 ~ 45042916 (+) True G1453879
TU1663335 lncRNA upstream 32215 45031217 ~ 45031471 (+) True G1453667
TU1663334 lncRNA upstream 34122 45029367 ~ 45029564 (+) True G1453666
TU1663326 lncRNA upstream 114809 44948487 ~ 44948877 (+) True G1453661
TU1663603 lncRNA downstream 18345 45087756 ~ 45091335 (+) True G1453913
TU1663605 lncRNA downstream 23684 45093095 ~ 45094284 (+) True G1453915
TU1663680 lncRNA downstream 103379 45172790 ~ 45172996 (+) True G1453990
TU1663714 lncRNA downstream 143126 45212537 ~ 45212737 (+) True G1454023
TU1663715 lncRNA downstream 143430 45212841 ~ 45213162 (+) True G1454024
XM_021568566.2 mRNA upstream 34594 44969478 ~ 45029092 (+) True LOC110493946
XM_036949962.1 mRNA upstream 133530 44895963 ~ 44930156 (+) False LOC110493942
XM_036949966.1 mRNA downstream 10195 45079606 ~ 45087749 (+) True LOC110493949
trnaq-uug-4 mRNA downstream 284067 45353478 ~ 45353549 (+) True trnaq-uug-4
XM_021568582.2 mRNA downstream 449315 45518726 ~ 45526398 (+) True LOC110493956
NM_001129986.1 mRNA downstream 497843 45567254 ~ 45572753 (+) True e3
XM_021568597.2 mRNA downstream 684358 45753769 ~ 45827044 (+) True LOC110493964
TU1663579 other upstream 12681 45050729 ~ 45051005 (+) True G1453889
TU1663269 other upstream 208947 44835997 ~ 44854739 (+) True G1453605
TU1662359 other upstream 543209 44513069 ~ 44520477 (+) True G1452804
TU1661935 other upstream 1456905 43606313 ~ 43606781 (+) True G1452399
TU1661856 other upstream 1499985 43541664 ~ 43563701 (+) False G1452369
TU1663604 other downstream 560 45069971 ~ 45070925 (+) True G1453914
TU1663743 other downstream 189064 45258475 ~ 45259571 (+) True G1454049
TU1663824 other downstream 265883 45335294 ~ 45336523 (+) True G1454127
TU1664577 other downstream 786838 45856249 ~ 45858501 (+) True G1454824
TU1666430 other downstream 2158808 47228219 ~ 47228796 (+) True G1456570

Expression Profile