RNA id: XM_036949966.1


Basic Information

Item Value
RNA id XM_036949966.1
length 3108
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110493949
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45079606 ~ 45087749 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGCCCAGCAAAGCAGATGGTTTGTTGTTGTTCTGCATGCAGGTTGAGGAGATGGGAAACTGTAGGTGAGGAATTCAGcaaagagacacagggagagacagaagttTTGACTGGGAGTAAAGCCAAAACCTATGGATCTTCAACAGATTGCAGATTAGAAGCGTGAAGTGTATCGGCCTCATTCTTCTTGGTTTCACTGGAGGAAGAAGACTTCTAGGCCTTTGACTCTCTATCAGAACTTCCTGGGATAACGGTTGTCCCACACGGCTATCTGAAGAAGAGaaaagacagggaaagagagaaataaagtgCAAAAACCACCCTGCCTCGGAAGGGGAAGAAGGACGGTGGTCctaagagggaggaggagatgcGCGAGGAGGTGTCCTGCACCAACTCCCCCGAGGGGGGGCTGGGGGCCAGCGAGGAGGAGCTGGAGAGGGGCTCCAAGAAGAGCGGGCAAACAGGGGGCCGAAAGCGGGTGCCGTACCACAAGAAAGACAATCTGGGTCGGGCCGAGGAGAGGGCCATTGTCAGCGGGAGCCCCAACAGCCTGGTTCCGTCGGGGCCCAAGCGGCAGAAGAAGCAACAGAACTCCCCCATGGCGGTGGTATGTGTGGCCCCTTCCTCGCTGGGCTCCAGCGGCCTCGGCTTAGGTTCGGGCGGCGAGCCCTTCGAGGACCTGCACACGCAGCGAGTGATCGCCAACGTGCGCGAGCGCCAGCGTACGCAGTCGCTGAACGACGCCTTCGCCTCGCTGCGTAAGATCATTCCCACGCTGCCATCGGACAAGCTGAGCAAGATTCAGATCCTGAAGCTAGCGTCGCGCTACATCGACTTCCTCTACCAGGTACTGCAGAGTGATGAGATGGACGCCAAGCTGGCCAGCTGCAACTACTTGGCCCACGAACGGCTCAGCTATGCCTTTTCCGTCTGGAGGATGGAGGGCGCCTGGGCCATGTCAGCCAGCCACTAGTGTCCCCTATCTGTCCTGCTCTACCCGTCCTGTTCTGTCCTAACCCCACTATCTCTGTCCTCCACCTAAGCCACTATCTCTGCCCCCTCTTGTAACCCCTAACCCACTATCAATGTAACCCCTAAAGCCACCATCTCTGTCCTCCTTTAAGCCATTATTTCTGCCCCTCCTTCTAACCACAACCCAGAGTCACTGTTCACTCCCCAACCTTTTTACCCATTCTGTCCCAATGTGTCACTCACCTATCCACTGCCCCATCACTCCCACCATACCCGTTCACCATTCGACCTTGCCCCTCCCCTTCCGGCTCAAATGCCCCCTGACAATGTAGCCCCTAACTCCACAAGCGTCTACGGTGCACCCCTGCAGGAAGGACGCCAAATGGATGgactcatctccctctctttaaAAGGTCTGTTCCTGTCGAACCAGTAGTTCCCCCCGCTATACCCTTATCTCCCGTTCTTTGGAAGCCCTGCCCCACAGACATGGGCATTGGACCGGACACATGCTTCGGTTTAAGGACAGATATCCAGTCGACTCTCCTTGTGCAGCCTGACAGACAGTATGATAATgccaacatacagtatgtgacaaACTTCGGAACTGAAGTGAGGAGGATACTTAAGGGTCACATGATGAACTTTCTGGACGTTAAAAACGTCCAACGCATCggccctgtccctgtccctttaTGCCACTTCAAAAGACTCTTTAAAAGAGGAAGATTCTTTGACCACTGAGATGACTTATGATCGTGATAATTGCAGTGATGATCGTCATAAGGATGCCAGAGTAATCGATAGCTGGTGGTCCCAGCCCAACGAATGTTTACAGCAAAGATGCTTATAAGCTTTAGGCTTTTCAACCTCAGATGTATAGGTAGGAAAAGCCAAAGAAGCCTGACGCACATTTTCAGCAGTTGTATAAACTAAATCGGCTTGATTTCTGTTGCCTTGTACATGTTTTTCTCTGTGTTGCATTATTTCCCTTCACAGCGAATGGATTTAGCATGTGCATATGCATATTACATTATAATGACTTTATATTAGAGTAATTAAGCAATAATCTATGCAGGCAACCTGTAATACATGAGTAATGCACACAGTTTTGTAGCATGCACAGATTATGGATAGATTAGACATAGACATAGTGGATAGATTCCACTAATGTCTTTCTGATATATATATACTTGTCTGTAGGATTTAAGTATGAAAAACATAATATGCAAAACAACAATGAAATAGTACATTACATAAAGAGTAACAGATAACATTTTGTTGTACTTTGTGCAAGTGACGGTCTAGTAGTTTTAAATGCAAGTTTAGTAATTCCTCAGGATTTCTCTTTAACATAGTACTATGCACATACTGCAATACCCTATCAGTAAATGTATTAAGAATGGAAAATAGTGCCAtgtactttttaaaaacatttgatAAATTCACATTTTGTGCTACTGGGTATTGTTAGGTCACGGCAATGTTATCTGATATACTGTCGCCAGAAAATGTAGTTTGTCAATATTTTTTCATCCTAATGCTCAGCTGTGGTTctcttagattttttttgtctccAGCTTTTCATTACATGAGCTCCTgtggaaaataataataaatgctgTTTTAATAAAAATACCACTGAAATAGTCTGGAAAAAGCCCATTTTCAAAAACACGTTGCATCTTTCTGTCTCATAGAAACTTGTCTAACACCTGTGCACATATTGAGAGTGTAGTATGCATAACAAAGAGTACATGGATAGACAAGACAATGTCTTATATGTTATATCTTATAAAACAAGATACAAAATAAGTGGATAGCAATAGCCTTTGTATTTGGACACAGCAAGGCAGGATCCAAGATTTTTGTCAAAATGTGTTACATTACAAAGTCATGTGTTTTTACATTACCGAAATAGCTGAGTGCTTGGTGCAAGTAAAATATTGCCCAATATTTCAAACATTATTGAAAGGATACAAAATATACACTTCAGAAAAAAACTATGTTGAGAACTTTAATTACCCTTTTATTGAGGAAAACAGTTTAtagaaaaaaatatagaaaaaaaaacaaaacaacattatTTTTTACAAAGTACAAACCAATAAAGACAAACAGTGAGAAACAAA

Function

GO: NA

KEGG:

id description
K09069 TWIST; twist

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1663574 lncRNA upstream 30392 45045996 ~ 45049214 (+) True G1453885
TU1663567 lncRNA upstream 36690 45042433 ~ 45042916 (+) True G1453879
TU1663335 lncRNA upstream 48135 45031217 ~ 45031471 (+) True G1453667
TU1663334 lncRNA upstream 50042 45029367 ~ 45029564 (+) True G1453666
TU1663326 lncRNA upstream 130729 44948487 ~ 44948877 (+) True G1453661
TU1663603 lncRNA downstream 7 45087756 ~ 45091335 (+) True G1453913
TU1663605 lncRNA downstream 5346 45093095 ~ 45094284 (+) True G1453915
TU1663680 lncRNA downstream 85041 45172790 ~ 45172996 (+) True G1453990
TU1663714 lncRNA downstream 124788 45212537 ~ 45212737 (+) True G1454023
TU1663715 lncRNA downstream 125092 45212841 ~ 45213162 (+) True G1454024
XM_021568567.2 mRNA upstream 10195 45063682 ~ 45069411 (+) False LOC110493947
XM_021568568.2 mRNA upstream 10195 45063686 ~ 45069411 (+) True LOC110493947
XM_021568566.2 mRNA upstream 50514 44969478 ~ 45029092 (+) True LOC110493946
XM_036949962.1 mRNA upstream 149450 44895963 ~ 44930156 (+) False LOC110493942
trnaq-uug-4 mRNA downstream 265729 45353478 ~ 45353549 (+) True trnaq-uug-4
XM_021568582.2 mRNA downstream 430977 45518726 ~ 45526398 (+) True LOC110493956
NM_001129986.1 mRNA downstream 479505 45567254 ~ 45572753 (+) True e3
XM_021568597.2 mRNA downstream 666020 45753769 ~ 45827044 (+) True LOC110493964
XM_021568602.2 mRNA downstream 1076729 46164478 ~ 46232702 (+) False dlgap4b
TU1663604 other upstream 8681 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 28601 45050729 ~ 45051005 (+) True G1453889
TU1663269 other upstream 224867 44835997 ~ 44854739 (+) True G1453605
TU1662359 other upstream 559129 44513069 ~ 44520477 (+) True G1452804
TU1661935 other upstream 1472825 43606313 ~ 43606781 (+) True G1452399
TU1663743 other downstream 170726 45258475 ~ 45259571 (+) True G1454049
TU1663824 other downstream 247545 45335294 ~ 45336523 (+) True G1454127
TU1664577 other downstream 768500 45856249 ~ 45858501 (+) True G1454824
TU1666430 other downstream 2140470 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 2717609 47805358 ~ 47807481 (+) True LOC100135862

Expression Profile