RNA id: XM_021568582.2


Basic Information

Item Value
RNA id XM_021568582.2
length 2477
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC110493956
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45518726 ~ 45526398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTATTACCTCCAGCATTCCTCCATTCTGCGCTCCCCTACTGCATGCTAGCCAATCATAATGTCCCTCGGTCCCTCCCCTTTCCAGATAAAAAGAGGGCCAGGGAACAGTGAGCTCCATCTGcacgagtctctctctctctctgcagcaaaTCTCCCAGGCTCTACAGACCACCTACTGTAGCACTTGCTAAAACCTAAGTCatcatgtccaccagagctgtgaaGAGCACCAGCTACTCTTTGAGGTCCTCCTCTGCAGGCCTGGGGTCTCAAAACTTCAGCAGCAACTCCAGCAACGGCTATGGCGGCGGAGCCAGACAACAGAGCTACAGTGTCCGCAGCTCTTATGGGGGTGTTGGCAGCAGCGCCGGGGGTGTGGCAGCAGGTGGCTATAGGGTAGTTGGGGGGTACGTGGCTGGAGGGACTGGGCAAAGAGGGGGCGGGATGGAGTTTGGGTATGCGGGCATGGGTGTTGGCGGTGGTATGGGAATGGGGGGTGGTATGGGGATGGGGGGTGGGAAGATGACATGTGTGGGACCCCCTCCGATCACCGCTATTCAGGTGAACAAGAGCCTGCTGGCCCCCCTAAACCTGGAGATCGACCCCAACATCCAGGTGGTCCGCACCCACGAGAAGGAGCAGATCAAGACCCTCAACAACCGCTTCGCGTCCTTCATCGATAAGGTGCGTTTCCTGGAGCAGCAGAACAAGATGCTGGAGACCAAGTGGGGTCTCCTGCAGGACCAGACCACCACCCGCTCCAACATCGACGCCATGTTTGAGGCCTACATCTCCAACCTGCGCAGACAGCTTGATGGTCTGGGCAACGAGAAGATGAAGCTGGAGGGGGAGCTGAAGAACATGCAGGGCCTGGTTGAGGACTTCAAGAACAAGTATGAGGATGAGATCAACAAGCGTACCGAGTCTGAAAACAACTTTGTTCTCCTCAAGAAGGATGCAGATGCTGCCTACATTGTCAAGACGGAGCTGGAGGCCAAGCTGGACTGTCTTACTGATGAGATTGAATTCCTCAGGACTATCTATGACGCGGAGCTGCTTGAGCTGCAGGGCCAGATCAAGGACACCTCTGTTGTGGTGGAGATGGACAACAGCCGTAACCTGGACATGGACTCCATCGTGGCTGAAGTGCGCGCCCAGTACGAGGACATCGCCAACCGCAGCAGAGCTGAGGCCGAGACCTGGTATACGCAGAAATATGAACAGATGCAGGTGTCAGCCACCAACTATGAGGACAATTTGAAAAACACCAAGGTAGAGATCGCAGATATGAACCGCAAAATCATGAGATATCAGTCTGAAATTGACAAGATGAAGGGTCAGCGCGGCCACCTGGAGAACCAGATCGCTGAGGCGGAGGAGCGTGGTGAGCTGGCGGTGAAGGACGCCAGGCTTCGTATTAATGACCTCGAGGTGGCCCTGCAGAGAGCCAAGCAGGATATGACCATGCAAGTACGCCAGTACCAGGAGCTGTTGAACGTCAAACTGGCCCTGGATATTGAGATCGCCACCTACAGGAAGCtgctggaaggagaggagagcaggcTGGTGAATGGAATCAAGTCGGTCAACATCTCCAAACAGTCTTCTTCAACGAACTACAACTCTTACCCCCTGGAAAGCAGTCGCACCACCAGCTATGTCAGCGGCTCAACGGGGGGATACAAGGTCAGCAGCACCAGCTACGGCAGCAGCACTTACGTCAGTGGCCATGAGAGCCGCCATATAGACAGCAGCTTCGACCTGCCTGGCAGCATCACCCTGGTAGGCACTACCAGCAGAGATGTGGATGCCAGCACCAGCCTGGGAGGCGCCAAAGGCACCAGCAGAGACATGGATGTCAGTATCAGCCTGGGAGGCAGCAACAGCCTGGCTACTAGCAGAGACATGGATGCCAGCGTCAGTGTCAATAGCAGTTCCACTGTCACCAACAACAAATCCCATACCACCTTAGTCAAGACCGATGATGCCGAGGTGACCTCGAATGTGGCTTCTGATGCGGCGTCCAACCATGCCGAGGAACAGGCGGCTGAGAGCGACAAATGAGGAGATTTCGTCATCGTGGGCGACCGCGTAATTAGCATACTGTGGATCTATCTGTCGCAGATATATGCTTCTCCAACCTACCTTTCACCCTTCCACTAGTTTCACTTTTCTAGCCAGGTTATTAGTGTATTTACCTGCTGAACAGAACAGTGACATATCAAACAGGCTACATATATCCACCTGGAATCACAGGGAGTCTAACTGTCTCCTCAGTCTAACTGTAACTTTTCCTACCCACAAAGGGTTTGTTTTAAAATGGTAAATGTGAAAGGTTGGGGGTAAGATTTCCCTTAAAAGGCCCCTGAAAGTCGACCCCTAGTGTCCATTCGAGTCACCAGCAGGTGTCATTGTGacacatgtttctctctctgcttgctcTGAGACACATTAAAGTACTTGGAGAAAAAACTAA

Function

GO:

id name namespace
GO:0045095 keratin filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1663809 lncRNA upstream 27663 45483910 ~ 45491063 (+) True G1454114
TU1663807 lncRNA upstream 64209 45453705 ~ 45454517 (+) True G1454112
TU1663804 lncRNA upstream 67358 45451118 ~ 45451368 (+) True G1454109
TU1663805 lncRNA upstream 69968 45448521 ~ 45448758 (+) True G1454110
TU1663888 lncRNA upstream 82215 45435833 ~ 45436511 (+) True G1454189
TU1663951 lncRNA downstream 67982 45594380 ~ 45594636 (+) True G1454248
TU1664301 lncRNA downstream 84718 45611116 ~ 45611409 (+) True G1454554
TU1664308 lncRNA downstream 89016 45615414 ~ 45615646 (+) True G1454561
TU1664361 lncRNA downstream 140523 45666921 ~ 45713858 (+) True G1454613
TU1664370 lncRNA downstream 149571 45675969 ~ 45684720 (+) True G1454621
trnaq-uug-4 mRNA upstream 165177 45353478 ~ 45353549 (+) True trnaq-uug-4
XM_036949966.1 mRNA upstream 430977 45079606 ~ 45087749 (+) True LOC110493949
XM_021568567.2 mRNA upstream 449315 45063682 ~ 45069411 (+) False LOC110493947
XM_021568568.2 mRNA upstream 449315 45063686 ~ 45069411 (+) True LOC110493947
XM_021568566.2 mRNA upstream 489634 44969478 ~ 45029092 (+) True LOC110493946
NM_001129986.1 mRNA downstream 40856 45567254 ~ 45572753 (+) True e3
XM_021568597.2 mRNA downstream 227371 45753769 ~ 45827044 (+) True LOC110493964
XM_021568602.2 mRNA downstream 638080 46164478 ~ 46232702 (+) False dlgap4b
XM_021568600.2 mRNA downstream 638080 46164478 ~ 46239382 (+) False dlgap4b
XM_036949984.1 mRNA downstream 638080 46164478 ~ 46239382 (+) True dlgap4b
TU1663824 other upstream 182203 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 259155 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 447801 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 467721 45050729 ~ 45051005 (+) True G1453889
TU1663269 other upstream 663987 44835997 ~ 44854739 (+) True G1453605
TU1664577 other downstream 329851 45856249 ~ 45858501 (+) True G1454824
TU1666430 other downstream 1701821 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 2278960 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 2307182 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 2504516 48030914 ~ 48036583 (+) True glrx

Expression Profile