RNA id: XM_021568602.2


Basic Information

Item Value
RNA id XM_021568602.2
length 3747
RNA type mRNA
GC content 0.64
exon number 12
gene id dlgap4b
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 46164478 ~ 46239382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAAACTCCTTTCTATCGAGACCTTGGCTCCTGAAGAATGAGCAGCCAATgaGTCATCCTCCAGGCCTCTCGTCTCTCCCTGGCTGGGGAGTCTTCTAGAAGGGGGCCCCTCCTGACCACCATGAAAGGGTTAGGAGCCAACCGCAATCGCTCCGACTCCTGCGACCCCACCCAGGGCCCCCCGGAGCCCCTGTACCCCCACCAGGCCGCCACACTGCCTCGCAGCCCCTACCTTCTCAGCCCCACCAGCATGGACCACTACGGCACCATGGACCCGCACCACTACAACCCCTCTGTGGACCACCACTACAATCAGGGCTCCCTGCCCCCGGACTATTCTCTCCCCCTCAACAACCAGCTGTCCAACAGCAGCACCTTCCCCCGCATCCATTACAACGCCCACTATGACCCGTCCGACTTCTCCCCGCCACAGGGGGACAGCATCGGGGGCATTAGCACGGGAACCCTGGGCACCTCCATGTCCATGGGCATGGGAATGGGCATAGGGATGCATGGCTCGAGTGGCATGGGGGGCCTGCAGAGCAGTCGGGGGCCCATGATCACCAGCGGCTCTGCCACCATCTCCGGCGGGGCCAAGATGAACCGGCAGCTGGCGCCTAACTTGCTGGACCAGTTGGACAAGCAGCTGCCTGGGGGGCCCAGAGATGGCTTCAGCACACTGCAGTTCCACCGGAGCACATCGGCCGCCCTCTCCGCCGCCTCCAAGCAGCGCACCGACAGCCCCGGGCGCATCCGTAACCTGGTGTGCTCTGTCCAGAAGCTCTTCGCCAAGTCACAGTCAATGGATGGCCACAACCTCAAGGGTGTCAATGGGCGTTCGGGGGCAGGAAGTGGCAGCGGTGGGACCTCATCCGGGACCGAGGACGGTGGGAAGCGGGACCAGCGAGCAAAGAGCAAAGACCGGGGCGGGTCCAAGTCAGATGGGGGCGGCACGGGCAAGCGGCGGCCGCGCTCCAACATGTCGGGCTACTGGAGCTCGGACGACCTGGACAGTGCTGACCTCAGCAACTACCGCAACCCCATAGCCATGACACTGGGACGACCCACAGCACATGCCACCCAGCACGCCACCCACGGTACTGCCTACGATTCCCAGCAGGGGGCACTACAGCAGCAGCAGGGGCACCAGAGCCGCTACGTGGTCCACAGCGGATACAATACCATCAGCTCATCCAAGAGCCACAACGAGGTCATAAAGTATCAACAGGCACTGCCAGGACCTGGGGGCGGAGGTGGGggcggaggaggaggtgggatcaGCATGGGGGTGAACAGTAATGACTTTATGAAGGGGGGTTCGTGGTCGACACTGACCCTGGGTCAGCCCAGACAGGTGCTGCAGAAGGGCCACTCGGCCACCCTGGACCGGTCCATGCTCAAGTCCAAGTCGTGCCAGCAGGAGCTGGCCTGCAACTACCTGCAAGTGGGCAGACAGGGGGACTGGAGTAACACGCTGGGTCGCAGCGGTGGAGTAGCCGGAGCCAACGAGATCCCATGCAGGCGCATGCGGAGTGGCAGCTACGTGAAGGCCATGGGTGACCTGGAGGACAGCGACGACTCAGACGTCAGCATCAAGCCCTCGCCCAAAATGGCCGCCCGCCGCCAGAGCTACCTCAGGGCCACCCAGCAGTCTCTGAGCGACCAGCTACCGTCACGCAAGAGCAGCAGAGCCCTGGATTACGCCATGCTGCAGGGGGAGCTGGAGGCACTGTGGTCTCCTCTGCACAGTGTGTCCTCTCTGCACCAACTGGGCAGCTGTCTTCCCTCTCTGAGAGAGTTGTCCACCAACCGTAGCCTGGACAACCTGGACTGTCTGGGGGGTCCGGTGGGGGGCTCCCTGTTCCCCCGCTGGGATGATGAGGACTTCAGCCAGGGTGGCGGATGCAGCACCCTGGGGAGGAGCAGCTGCATTAGCCAGCTACGAGACTTGGAGATGTTGAGCCAACGCTACGAGGATAGCTGCGCCGAGTCGTCGTTCCGAGATTCCCACACACTCTCGCGCTCCCATTCCCAGGCAGTGGAGCCTCCCGATCTACCCATGCCCACGTGCTTCCGATCTCGTAGCCATAGCTACCTGCGGGCCATCCAGGCCGGATGCTCGCAGGATGACGACACTGCTTCTGTGGACTCGGATTCGCCACCGCCAACCGCCACTACTGTTCGTACCTACAGCACCAGCACTGtCTCCACATGCATCACCACCTGTAAGAAGCCGGCGCCCCCGCCCGTGCCGCCCCGCACCACCTCCAAGCCCTACATCTCGGTGACGGTGCAGAGCAGCACTGAGTCGGCCCAGGACACCTACCTGGACCACCAGTCTGAGCGCGACCGTCGCAGCGAGACCATCACCAGCCAGTCTAGCCAGGCACACAGCAATTCCTCCGACAGCCTCGACAGCACGCGCGCCAACAGCCTGGCTCGGGGTGTCCCTCGGCCTATCCCCATGCCCATCGCCATCCACCGGGAACCCCTCGCCACCACCGTCCACCACGCCACCACCGGGACTGACACCAATGACTCCCAGCATGAACCCCTGAGGACAGCCGGCAGCAGAGGGAGCCTGACAGCAGAGGAGCCACGAGCGGACATCGTGCCCCGGAGAAAGCTATCCTCCATAGGGATACAGGTTGACTGCATTCAGGAGGAAGTCCAGCGAGAGGAGACACCGCCACCGCCATTGGCCAGATTCCAGTCAATCGGAATCCAGGCGGACGACGGCTGGCACAGTCGCTCCAGTAGCATGGCCTCCAAGCAGGAGACAGACTCTGACACACAGGACCTTCCCATTAACTCGCACGCCAACTCCCACGCCAAGCCCGCCGCCGAGAAGAAGAGCATGGTCAACAGCGCCTGCCAATCCATGGCCTCGCCCCCGTGCAGCGGCCAGGTCAGCAAGGGCAACGGATCAAATCCCACCGTTGACACCAGTACGTCGCCACCTCCGCTTCGGCAGATCCTCAACCGCTCCACCACACGGTCCGACTCCTCCGACTCCTTCTCCGAGAGCATGGACCCAGCCCTGGACCCCTCATCCCTGCCCCCTCCGGACCCCTGGCTGGAGAGCGGGAACGGAAATAGCGGCAGCGGGAACCCTAACGCGGTGCCCCCTCCAGGCCCTGCCTGCCGGCGGGACGGCCACTGGTTCCTCAAGCTGCTGCAGGCGGAGACGGGCCGCATGGAGGGCTGGTGCCAGCAGATGGAGCAAGAGACCAAAGACAACCAGCTCTCAGAGGAGGTGTTGGGGAAGGTCCGCAGTGCAGTGGGCAGTGCTCAGCTCCTCATGACCAAGAAATTTGAGCAGTTCAGAGGGCTGTGTGAACAAAACTTGaatGTGAACGCCAACCCGCGGCCCACAGCCCAGGACCTGGCGGGCTTCTGGGACCTGCTGCAGCTCTCCATCGAGGACATCAGCCTCAAATTTGACGAGCTCTACCAACTCAAGTCCAGCGACTGGCAGTCCCCTGCCGTGGCCCACTCGCCCCCCGAGCGGAAGGTACTTCCCACCCCTGCTGCCCAGTGCCCAGACTGGGGAGGACAAGAAAGAGGCCCCTCCTCCAGTGCCAAAGAAGCCCGGTAAGGGGAGGCCGGTGCTGGGCCGCGAGAAGAGCGCCGACTCCGCCTCGTCCACCTCTTCGGCGGAGAAGCAGCGGACGGAGGCCCGCAAGCGCCTACTGGCTGCCAAGAGGGCCGCCTCGGTCCGGCAGAACTCGGCCACGGAGAGCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1664802 lncRNA upstream 1975 46162302 ~ 46162503 (+) True G1455040
TU1664801 lncRNA upstream 3458 46160797 ~ 46161020 (+) True G1455039
TU1664800 lncRNA upstream 5439 46158634 ~ 46159039 (+) True G1455038
TU1664746 lncRNA upstream 69993 46094285 ~ 46094485 (+) True G1454984
TU1664741 lncRNA upstream 74782 46089484 ~ 46089696 (+) True G1454979
TU1664871 lncRNA downstream 44413 46277115 ~ 46278239 (+) True LOC110493971
TU1664897 lncRNA downstream 64807 46297509 ~ 46297720 (+) True G1455131
TU1664934 lncRNA downstream 149260 46381962 ~ 46386611 (+) True G1455166
TU1664959 lncRNA downstream 192711 46425413 ~ 46461287 (+) True G1455191
TU1665472 lncRNA downstream 230684 46463386 ~ 46463600 (+) True G1455669
XM_021568597.2 mRNA upstream 337434 45753769 ~ 45827044 (+) True LOC110493964
NM_001129986.1 mRNA upstream 591725 45567254 ~ 45572753 (+) True e3
XM_021568582.2 mRNA upstream 638080 45518726 ~ 45526398 (+) True LOC110493956
trnaq-uug-4 mRNA upstream 810929 45353478 ~ 45353549 (+) True trnaq-uug-4
XM_036949966.1 mRNA upstream 1076729 45079606 ~ 45087749 (+) True LOC110493949
XM_021568605.2 mRNA downstream 11059 46243761 ~ 46252957 (+) False LOC110493969
XM_036949985.1 mRNA downstream 11164 46243866 ~ 46252957 (+) False LOC110493969
XM_021568603.2 mRNA downstream 11222 46243924 ~ 46252957 (+) True LOC110493969
XR_002469223.2 mRNA downstream 43105 46275807 ~ 46277967 (+) False LOC110493971
XM_021568607.2 mRNA downstream 69711 46302413 ~ 46346158 (+) False LOC110493972
TU1664577 other upstream 305977 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 827955 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 904907 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 1093553 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 1113473 45050729 ~ 45051005 (+) True G1453889
TU1666430 other downstream 995517 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 1572656 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 1600878 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 1798212 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 2156380 48389082 ~ 48424405 (+) False LOC110494013

Expression Profile