RNA id: XM_021568603.2


Basic Information

Item Value
RNA id XM_021568603.2
length 4147
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110493969
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 46243761 ~ 46252957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAGTATTTGTCCTACCTTACTAGACAACGAAACGCAATGGCCAGACACTGTTCGGTTGACGAGTAACACGTTTATGTCACACGAACGAAGAATTGAACCCACGAGCGGCAAAATAAAAGCGTGCAACACCTTGGAAAGAAAATATCGCGTCAACGTTTTGTCGGGggcaacacttttttttttttttttttttttttttttacaaggcaCTTCGACAGCTGCGTGTTTTCAAACAAGCCATCAACAAAGAATGAAATCATTCAAACGAGTTCTGGAAGAGGAGCGGATGCGAGAGCAGGAGCTGTCAGCCATGTCTGACAGTGACCCCTTTGAGGATGACAGCTCCACCCTTGACCTGTCTGGTGGGGGCTCGGGCAAGCGGCGTCGCCGTGGCAACCTGCCCAAGGTAGCAGTGCAGGTGCTGCGGAGCTGGCTGTACGAGCACCGCTTCAACGCCTACCCCTCAGAGCAGGAGAAACTCAGCTTGTCAGATCAGACCAGCCTTTCTGTGCTGCAGATATGCAACTGGTTCATCAATGCCCGCCGCCGCCTCCTCCCCGACCTTCTCCGCAAGGATGGCAAAGACCCCACCCAGTTCACCATCTCCAGGCGGGCGGGGAAGGGAGAGGGCTGCCCAGCCACAGGAGGATTTGGCAGTTCCCCTGAAAGCCCCACCTCAGTCCACTCTCCAGCCCTGCCCCCTCTCAGGCCCTCTGTCATCCGACCAGCCCCCACACTGGACCTCAGCCTCCTGGGAAATACTGCCACTGCCATCCTTTTGGGAGCTGGCTACCCCAGCCAAGAGGGCTACTGTGTCCAGGCCCTGATGCAGCTGGACATGCAGAGTCTCCTGAGGAGGGAGGCCGAGGAGAAGGGCTCCAAGGTTATCAGCGCCAGCCCCACTGGCGGGCTATTCAACACGCCGCCCCCCACGCCTCCGGAGCTGTGCCCCTGCCAGGATTTCAGTGACTTGAGGTTGCTGGTGGATGCAGCTCTCCAGAGGGCCGCCGAGCACGAGAGTCAGAGGCTGCTCCCAGAGTACCAGAGCAGGGCTACTGCAGAAGCGACGGGTGGCTGTAGCCACAGCAGCAGTGCTATGGGTCCGACCACTCCACCGGCGCAGAGCCAAGCTACGTTTGACTCGCCCAGAGAGCAGAGTCCTGCGAACAAGGCGGTGGTGTCCCCAGTTTCAGTCCTAATCCATGTCCCAGTCTGTTCTGCACCTAAACTCGCAATGGCCTCTGTACCGGCTCCAAATGTGCCTCCCCTCCTAGCCCAAATGCCAGTTTCAACTCCCTTTCCAACCTTTGTCCCAGCTCCAACTCCAATCCCAACCAAACCCCTTCTCCCAAGCCCCGTTCAAACCTTTGCCGGTGTACCAACTGTGTCCTGTGTCCCAACCTCAGTCCCAGCTCCAAGCTCTACCCAGGTCCCAACCCTAACCTCTGTCCTAACCCCGGCCCAACCTTTAGCCCCAGCACCACCAGCCCTCAACCCATTCCTGGGCCTGGCCTCCCTCCAGCCCTTGTCCTCCTCCATCCCCAACAGCAGTGTCCAGAGGGCCCAGTCGGTGCCCAGTGTGTGGAGTGTGGTCCACAGCGATGTTACAGTCCGACAGCCTGTCCCCGTGGTTCAGACTCCCAAGGCCGCCGTGTGGGGGCCACAGCACACCTTGCACACTGTCAGCGAAACCGTCAACTAGAGCCACGGCCACTCccttgtctgtgtgtatgtgagggaGCCCCATATCCCTACTCAGACTGCCCCTACCTATGTGTACGTTTCCTTCATCGGCCCCTCTGACACTATGCTCTGCAGTTTGGATATGGCAGAACTCATGCATACGGTTCATACATCAGACGCTAGGAAGGATACGATGGGATGGAAAGACGATTGTTTTTAAAGACGGTGCTTTTTTTAAGCATTTTTATCAGGATTTATCCAATGCAGACTGTTGCTGGGTGGAACCTTTCAATGTGGTTTTTCAATCAACATTTCAGAGTATAGGTTAAACGTTGCGACGGTTGACATAAGAACGACGACACCAAGTTCCATGATGTAGTTTTTAACTCCCTTTTCCACTATCTCAACTATTTCCAAAAGGGGTCAAGGAGGACATTTCCTTCccctgtgatgtttttttttttaaacagtgaaGTTGCACCAGTAGAGCTAGGCTTATCTGTCGCAATACTGGACTTGGTTGAATGTATTAAGGTTACTTTTATCTCTGGCGGTCTAGCCTGTCAATCATTCCCACCAAGGTTAAACAAGGGTGGACCTGGGGCTGAGACAAGTGTTTTTCAAGCCCTGGTGTTGCGCTCCTCCAGTACAGTTTATGCACTTTAGATattttcatgtccacatcttcaCACAGTGCCGGAAGACGGGCGGAAGGGGAAATTGATTGTATTGCAGTGTGCCTGACTGCACAGCTCCaatgtctgtctcctctctccttgcctTAATTAAAGCTACTGTAAAAAAGTGGCCACCATGGATTCTACATTTGAGACACTAAATCATCAGTTGCAAAGAATATGAActcttttttaaaaacttttttaaaTGTTCATTTAAACCTGTTTCCAAAATAGTATCTTAGTAGGTAAATGTTTTTGTGTGAAAACACACCaggaattatatatattttttggtctGTTACTTTCTGCGCTATCTTTATGCATCATGTACAATTTCCAGGGATGTATTGTTTTTATTGTGGATGTGAAGGAGGTGGaattcctgtctgtgtgtttgagagCGATGGGGCGGGAGGTCCCGTTATAGAAATCGATTTTGTGGCGAAGCTAAAGGCTTAGTTCTTAAGGGTAATGTAACACTTGCTATAATTGCCCTATTATGCCATAGTCTTTTATGGATGAAGCTTGTCACAAACATTTCAAGCTTTTGGGCACCCCTGTTTGGAGAGGGATTGACCCAAGTAGCGAATCATTGGCGGCTTAAGATTTGGTCCTTGTGTTGCAAACAAATATATCTTAATTGAAACGCCTGTTGTTGCTTGGATGACAATCTGGTCAGTGTTGTATTGAATTAGTTGATTTTTAATGTTGAGTAAGTTATTGAGAAGCAAACTGTCtgacttcctttctctctcttttccctctgttTTAGCGACGCATATCCTCTCGTTAGACTATTTCTTATATGGTTGTAGTTTCCATGAAACAATCTCTCATACTGCATGTTATGGCCAAATCGACGCCGCACAGAGTTAGTTGGGGCTCTACTACGTAAACAGTGCTGCTGCAAAGTAATTTTCTTCTGTCCATGGGTCAGTTCAAATGGGACTAACTTAGTCTTTAATAGCTGTTACCGGTGCCATACATGTAATGACCCTGGtggtgattttttttgtttttgtttttttacaactAGATGCATGAGAAGAGCAGATATGGAATCCTGTGTTATTATATACCTAGATTTGTGACTAGCACAAACCCCCATTCCTTCACTTCCTCTTGTTTTCTGCTCTTTCGTGAGGCTTAATGTCAGCACCATTTCCTGAATTGTCTAGAATATCAGTGGGGAAGGGTAGATGTTCTAGATCCTCTGCTAACGGAGATATGCTAAAAGAGTCGCCTCTTTCTCACACACTTTGGGTCGACTGTAGGGTTCGGTCAGACTTGAGTCTGAATACTAAGCAAAGAATGTTAACTAGTTTAACAGGTTTTGAATGCAGTACAATAAAGCGGGTATGTGGTTTATTCATTACTACACTTCTATGTTACTACATATTACTCATTGTGATACTGGAATCGGCTGGATACTGAACATTATTTAGAAAGGCTATTTTATATATATCAGGTTTTGGATGCAGAATGAAACTTGAGTCGTAGATGCCAATGGGAAAAATGTCACGGTGGGGACGGGGCCATGAACTGTCTCAAATGTGTAGCATCTCAATACGACCAAATGCATCCTAAATGTTTTTCCATTTCACTGTGAAATCATGGCTGATGTGTGGGGCAATATAACTGGCTGTCGTGCCTTAAACCTGGGATTGAGGGAACATGCCCCTTCTACATAGAAACTTTTGAATAGTCGGTGCAATATATGCCTTAAACTTTAAATGTGTTTTGTACAAGCGTTTCAGAGAATAAAACCTTTTTCATACGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1664831 lncRNA upstream 47914 46195795 ~ 46196010 (+) True G1455069
TU1664830 lncRNA upstream 49328 46194377 ~ 46194596 (+) True G1455068
TU1664829 lncRNA upstream 49716 46193860 ~ 46194208 (+) True G1455067
TU1664828 lncRNA upstream 50133 46193555 ~ 46193791 (+) True G1455066
TU1664822 lncRNA upstream 59252 46184448 ~ 46184672 (+) True G1455060
TU1664871 lncRNA downstream 24158 46277115 ~ 46278239 (+) True LOC110493971
TU1664897 lncRNA downstream 44552 46297509 ~ 46297720 (+) True G1455131
TU1664934 lncRNA downstream 129005 46381962 ~ 46386611 (+) True G1455166
TU1664959 lncRNA downstream 172456 46425413 ~ 46461287 (+) True G1455191
TU1665472 lncRNA downstream 210429 46463386 ~ 46463600 (+) True G1455669
XM_021568600.2 mRNA upstream 4542 46164478 ~ 46239382 (+) False dlgap4b
XM_036949984.1 mRNA upstream 4542 46164478 ~ 46239382 (+) True dlgap4b
XM_021568602.2 mRNA upstream 11222 46164478 ~ 46232702 (+) False dlgap4b
XM_021568597.2 mRNA upstream 416880 45753769 ~ 45827044 (+) True LOC110493964
NM_001129986.1 mRNA upstream 671171 45567254 ~ 45572753 (+) True e3
XR_002469223.2 mRNA downstream 22850 46275807 ~ 46277967 (+) False LOC110493971
XM_021568607.2 mRNA downstream 49456 46302413 ~ 46346158 (+) False LOC110493972
XR_005036990.1 mRNA downstream 49456 46302413 ~ 46346158 (+) False LOC110493972
XM_021568608.2 mRNA downstream 56779 46309736 ~ 46346158 (+) False LOC110493972
XM_036949986.1 mRNA downstream 56872 46309829 ~ 46346158 (+) True LOC110493972
TU1664577 other upstream 385423 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 907401 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 984353 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 1172999 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 1192919 45050729 ~ 45051005 (+) True G1453889
TU1666430 other downstream 975262 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 1552401 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 1580623 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 1777957 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 2136125 48389082 ~ 48424405 (+) False LOC110494013

Expression Profile