RNA id: XR_005036990.1


Basic Information

Item Value
RNA id XR_005036990.1
length 5642
RNA type mRNA
GC content 0.50
exon number 20
gene id LOC110493972
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 46302413 ~ 46346158 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATACGTACCTCCTCTAACCTCGATTTTATTTTGTCGACTTCCGGCTACTTTCAGCGTACCACTCAAACGCTGACTTGCATGTTGTTCCATAGAGAATAGTGTGCGCACGCGCCTGGAGTAGGAAGCATCATTTTGTGGAACTCCGTTTGTAGtccCAGACCATGAACTACGTGGGGCAGCTGGCAGAGTCGGTGTTTGTGACGGTGAAGGAGCTGTACCGGGGCCTGAACCCAGCCACGCTCACGGGGGGCATCGATGTCATTGTGGTGCGCCAGCCCGACGGCAGCCTCCAGTGCTCCCCATTCCACGTGCGCTTCGGCAAGCTGGGGGTGCTGCGCTCCAAAGAAAAAGTGGTGGACATTGAGATCAACGGGGAGCCAGTTTACCTGCAAATGAAGCTGGGGGACAACGGAGAAGCTTTTTTTGTGGAGGAAAATGAGGACTTTGAGTCCAGAGTGCCAGCCCACCTCTGTACGTCACCCATCCTCATCGAGCTCCCGGAGGGGGCCGAGGAGACCTTCGAAAGCCCCCCCACTTCCGGTAGCACACGCAGGAAAAAGCGGCGGCGCAAACGCATACGCTCCGACTCCCACCTAAGAGATGACGGCAGCTCCTCGTccgatgagagggagagagagcgggagcagaCTGAACAGGAGAGCCCTTCCAAAGAAGAGCTCACCACATCCATGCTCGCCAGTAAGTCGGTGTACTTCTCGCTGTCTGAGCAACCGTATGAAGAGTTGGGGGCCGTGCAGAACAGGGACGTACACCCTCACTCAGAGGGAGAGTGGTCCCCCTCAGAGAGCAGtgtgttctacagTCGTCCTTCCTCCCCCAAGAGTGACTCTGAGCTGCTGGTGAAGCCTCAGGAGTCCTCAGGGCCTCAGATGCAGTGGAACTGGGGTGGCTTTCCAAAGATGTGTTTGGcggagagggggatggtggaggtgcAGCGCGTCTCCCCTGGCATCCACTGCTCGGACAGCTCCCACTTCCGCACCATCCAGTGGCAGGACTCCTTCGACATGGGCCAGGAGCCCGGTTTCAGCTGTGGCCGAGCGAACAGTAGTGTAACGGTGGTGGTCAGGCCCAAGCCCAGGACCGGACCAGCggtcccacacacagagacttccCCCATAGACCTGGAGAGAACCTCTATGAGAAGCTCCAGCCCATATCACCCCACTGCAGAGCCACTGACTTTAGCATCATTAGCGATGGCTAGCATAGACTCTTCCCAGGCTCCAGGGCATACAAAAACGCAGCCCCAAGTAGAGACCCTGCAGTTAGGGGAGGAGGGAGCCAAGGAGTCTGCATCCAACCTGGAGCTGAAAGAGGCAAGATCCTCCCTGGCTAACATAGTTAGCATTGCTAATGGAGGAAATACTGATAGCCTAGCTAGCGAAGGAAGCATAGGCGATGTTGAATGTGTAGCTAACACAGTTAGCCTAATTGAAAACGACTGCATAGACACACCCATCCCACCCAAAAAGGGTAGCAAAGCTGGCACAACCAGCACAGACAGGCTAGCTAGCAACAGGATAGATACTTTAGCAAACACTGCTAGCTTACCTGACGCTGCTAGCTTAGCCAATGCAGCAGGTCCCAACATTTTCACAGAGTCTCTCGATAGGATAAAACACCCAGACCAGCACAGTGCCTTACCAGAAACCAATGGACAGGGGTTTGCAGAAGGAGTCATCGTAAGTGAGAGCAACAGCGGGATCAAGCCCTGCactgagggaggggaggagatggagataaAATCTGTTATGCCAGACAGAGCCACAGAGGGCTCCCTGACCAATCAGGCTGCGGAGAGTATTGGAGTGACAGACATGGGAGCCACTGAGGCTCTGGGGGAGGAGCATTCTGGCTCAGCAGTCACAACGGGCAAAGCACAGCACCGAGACAAGAAGAAAGGTAAACGCAGTCAGCACCTAGGACCCTCCGACATCTACCTGGACGACCTGTCTAACCTTGACCCAGAGGTGGCAGCTCTCTACTTCCCGCCTAAAGGTGAGACAGAAGGGAGCTCGCGGCAGGGTGCTGAGCAAGGGTCTGGGTCTGGTAACCAGTCTCCCCAGTCGGTGGGCAGCGGGGCCATGGACAGCGGAACAGAGTACCTGTCAGACTCCACCTCCGACCACATGGATGTCAGCATGTCCCTCTGCGGCCGCACCGGCCACACCAGCCACATcaacaaagATAAGTTTATGGAGCAAGTTGTGAACTACCAAGATTTGGTGAGCAACCCTGGACTTATCGAAGATCCAAATCTGGTTATCTGCATCAACTCAAAGTACTATAACTGGGCAGTAGCTGCCCCTATGGTCCTGTCAATGCAAGTCTTTCAAAAGAATCTACCAAAGaGTGCCATTGACCAGCTGGTGAAGGATAAGATGCCCAAAAAGTCTGGCCGCTGGTGGTTCTCCTGGAGGAGGAAGGACATGGACACTAACCCAAACCAGCCTGGAGAGAATTCCAAGCAGGATCAAGAGAAGGCACAAGCAGAGACTGAAGAAGCCTCAGCCTCTGTTTCCGGTCACTCAACAACGATACTGGCCACTCTCGATGACCTGACAAGCGACGAGGAGGCGGGCCTGGGCCGAGATGGCAGCCTATCATCAGAGACCTCCGAGACCATGACCACCGCCCAGTGTTTCAGCCAGATGTACCGGAAGTCCCTACGCCTCACTTCCGATCAGATAGAGCGGTTGAACCTGCGGGAAGGGGCCAACAAGGTTGTGTTCAGCGTGACCACTCAGTACCAGGGCACCTGTCGCTGTGAGGCTGCCATCTACCTGTGGAACTGGGACGACCGCGTTGTCATCTCAGACATCGACGGCACCATCACCAAGTCTGATGCTCTTGGGCATATCCTACCTCAGCTGGGGAAAGACTGGACGCACCAGGGCATCGCCCGACTCTACCACAAAATCCACCAgAACGGCTACAAGTTCCTGTACTGTTCGGCGCGGGCCATCGGCATGGCCGATATCACCAAGGGCTACCTGCAGTGGGTGAACGACAAAGGCACCGTCCTCCCCAAGGGCCCTGTGCTGCTGGCCCCCAGCAGTTTCTTCTCTGCCCTGCACAGAGAGGTGGTGGAGAAAAAGCCTGAGGTGTTTAAGGTCGCCTGCCTTACCGACATCCGAGATCTGTTCAACCCCCAGAGGCAGCCCTTCTACGCAGCCTTCGGTAACAGGACCAATGATGCCTATGCCTATAAGAAGGTGGGTGTCCCTGACACCAGGATCTTCACTGTGAACCCCAAAGGAGAGCTCATTCAAGAGAAGACCAAAGGGAACAAGTCATCgtacacacacctcggCGAGCTGGTGGAGCACTTCTTCCCTGAGATCTCCAAGGATGGGACTTCATCCTCCTTCCACTGCCCTGAGTACAGCCACTTCTCCTACTGGAGAGAGCCCCTACCACCACTGGACATGTCCTCTCTGGACtagacatacactcacacacacacacacaccactggacCAGTCCTCTctggactagacacacacacacaaacacacacacacacacacacacacacacacacacaccactggacAAGTCCTCTCTGGACtagagacaccacacacacacacacacaccactggatAAGTCGTCTCTGGACTAGACACTAGTGCGCATGCACACACTTTCTTTCCTCCCCTTTGctccttttccttctctctctctctctgtcgatcCGTTTCTGAATTCATAAATGGCTTTACTAAGTGTTCATTGCCTGGAATATTCTAGATGTGAAAGGTTCTCATTTAATATACTCTATATTCTCCTGTGTCATTAATCTAATGCAATAGAGAAGATAAAGCTAAAGTGTATGGATTTCAAAAAATTactgggagacacacacacacacaaacacacacagacatgcacagagCCAAATTGAGACCAAATATGCATCGATGACTGTTCATTTTACGCAACACTGTATGCTTCATATTGTGGAAAATTGATTGCAAAAAGTCACTGCACTGGCCGTGCCATATTGCCATTATCCAAACGATACTGGAGCAAGGTACATTTGTGCGTCTCAAGAGTTCCAAAAAGAGCTTTGCCATTTTAAAACACAGTTAGCAAACCTGCATACTAGTATACTATACAAATGAAAACATCCACGTACAGACGCAACTGGACAAAAATACCCTTCTGAGTTTTAAGTTTGTTTTATCACTTTTTTGCCTGAACTTTCTACTTAATTTGGTGTATGCATACAATTCCATACTATAtattgttttgaaaaacatatttaTTAGCTCATTGTACCATTGAGCGCAAAACCGCTTTTTAGCGTAGAAAAGGTAAGTAAGCTTCAGCTTGATTTGAAAACAAAGCCCCCCCAAAAACAATGCCAAACAACGTGAGTATTTATGCATTGTGTTCTAGTGGGACTGATCTGGAATTGTCCATCTTTCTCTTTGCCTGTACTCGCTGTAGTCCATTGCAGTGACGACTCAGTAGTCtgctttaaagggatagttcacccaaattctTCCCTTTTTTTTCTGTACTTTAAAAGTAGTCCATTGACTATTATGATCGACTGCAGGACACTCTTCCCATGTGATGGTGGAACATTGAATGTCAGCATGACCAAGTAACCGTACTTTGAGTTTTACATTAGATGAGTAAAGGACAAAACCATTTTCTTTTTACAGTGCTAAAATGAGATTAGTGTAAAAACTCTAAAAAAGCAAtagaagtgtgtgtgcatgttgacCCCAAAGAGTATATTGTAGCGGAGACAATGTGCTGAGTTGTAGCCTAGCGTGATGAGTAAGCCCATCCGTCTTGAGACCAAAATGACTTGAACTGCTGCTTTTGACTGGAAGCAAGCTTTTTGATCTAGTTTATAGTTGACTTTGCTATGTATTTTGGAGCTCTTGCATCAAGGATTTGGTAGCAGTTGGATACACACAGGCCCCAACCAGAAACGGGACCCAACCAGAAGCAATGCCTAGCCCCTGCCCCCGCAGTGGTCAGGGTGGTGCATCAGGCTTCTTGCACCCTGGAAAAAGTGTTTCAGCTTTACACAAGAGACGAGGGAGTAGCGGCTAGGGGTTGTTTCAGGACAGGTGCAATGGCATAGTAGGTTAGGGGTTGATTCTAAAGTCTGGGTTAAAGCTATAGCCCCTCATTAGCTTTTGTCACGCAGAGGTGCGTTATGGGCGAGATCTTAGCAGAATGTGTGTTGCTACTAGTTAACAGTAGGCTCGGATCACACCACTCTCTTTAAGGTTACTACACTTCATGTTTTCGAGCTGAGCCATATAGATATTTATATATGGTTTCGGTACGGTTTTATACTAGGCCATACGTGAATCGGGTGGTTCAGAATCGGACACATTCCAGGGTTGAGTAAATAGAACCGGTTGGGGAAATGAAATGGTCTGGTTTGACACGGTGCCTTCTTGTTTATATGATTCATAAGCTTTTTATATGTATTGATATTTCTAAATATATTGTTTAATGTCATCCAAAGTAATACCATGGGCTCTGTGTGGAGACTAGAGAAATTGCATTGGACCCGAAAAGCCCTGTCGTTGCTGTAAGTTTTTATCAAATTATCTTaatataaaggaaatactgtaaaaCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1664897 lncRNA upstream 4693 46297509 ~ 46297720 (+) True G1455131
TU1664871 lncRNA upstream 24174 46277115 ~ 46278239 (+) True LOC110493971
TU1664831 lncRNA upstream 106403 46195795 ~ 46196010 (+) True G1455069
TU1664830 lncRNA upstream 107817 46194377 ~ 46194596 (+) True G1455068
TU1664829 lncRNA upstream 108205 46193860 ~ 46194208 (+) True G1455067
TU1664934 lncRNA downstream 35804 46381962 ~ 46386611 (+) True G1455166
TU1664959 lncRNA downstream 79255 46425413 ~ 46461287 (+) True G1455191
TU1665472 lncRNA downstream 117228 46463386 ~ 46463600 (+) True G1455669
TU1665482 lncRNA downstream 123045 46469203 ~ 46469462 (+) True G1455679
TU1665613 lncRNA downstream 253850 46600008 ~ 46600165 (+) True G1455800
XR_002469223.2 mRNA upstream 24446 46275807 ~ 46277967 (+) False LOC110493971
XM_021568605.2 mRNA upstream 49456 46243761 ~ 46252957 (+) False LOC110493969
XM_036949985.1 mRNA upstream 49456 46243866 ~ 46252957 (+) False LOC110493969
XM_021568603.2 mRNA upstream 49456 46243924 ~ 46252957 (+) True LOC110493969
XM_036949984.1 mRNA upstream 63031 46164478 ~ 46239382 (+) True dlgap4b
XM_021568609.2 mRNA downstream 7772 46353930 ~ 46361034 (+) False LOC110493973
XM_021568610.2 mRNA downstream 8628 46354786 ~ 46361034 (+) True LOC110493973
XM_021568611.2 mRNA downstream 16874 46363032 ~ 46375987 (+) True tpra1
XM_021568613.2 mRNA downstream 30102 46376260 ~ 46436526 (+) False LOC110493975
XM_021568614.2 mRNA downstream 30102 46376260 ~ 46436526 (+) True LOC110493975
TU1664577 other upstream 443912 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 965890 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 1042842 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 1231488 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 1251408 45050729 ~ 45051005 (+) True G1453889
TU1666430 other downstream 882061 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 1459200 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 1487422 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 1684756 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 2042924 48389082 ~ 48424405 (+) False LOC110494013

Expression Profile