RNA id: XM_021568622.2


Basic Information

Item Value
RNA id XM_021568622.2
length 5200
RNA type mRNA
GC content 0.53
exon number 23
gene id LOC110493980
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47109723 ~ 47134585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCTTCATAGTTTTGGGAAAGTCTTTGAGGAAGTTTGGATGACCCATTTCCATGACCTATATTTTCACAGTCGACAAAAATCTGTTTCGCCCGTTATTCTTGTTTGTTTCTTTTGCATGACATGTTTTTAAGACATATTGTAACACAATTTCGTGTTATCAGAGAACAATGACAATGTTTCCTTTGTCTAATACAGTAACAAGAGGATGCAAAATGTAACGGATTTCGGGAAAGTAGTGAAAGTTTTAGAACAAACGAATGCTTCAGGTACATTTCCTCGTGGAAGTAGTCACTGTATGCACTATTTTCTTCTGTTTTCAACAAGAGTATAGGCCTGTATTTTGGAGACGTCTACAGCACCGCCCTTTTCATTCGTATGGGTTCAATAATGTAAGCCATCATGAGAATCCATGCCATTCCGCTATCATGGGGGACAGCAACCATGTACATCCCGCGTTCTGTTACATCTCTGTACTATCATGGGGAACTCGACAGAACTCATTTGGAAATGGTCGACCTAGAGACTCTCTTAGACCATTTCAGCATGACCCTGGTGGAAAATCAGCAGAGCTGAGCTCGAAGAAGATGGATGGACAACCAGGGCCATGTGGGCCCATGGCTTTCTGTGCTGAAGAGGGTCCTCTTCGTTCTGTGGCCCCAGCCGGTCCCGGGGGCCAGTCCCTCTACACCTCCTTAAGCCACCTGGCCAACATCATGCAGCATAAGGCCCGGAGCCGCAGGAGCAGTCTCACCAGATACATCACTGGTCACACTCTGCCTCAGATTCAAAGTGCTGCACAGCCATCAGCATTTGGACTCAAATTTCAGAAATGTGCCCAGGTGGAGGCAGGTACCGAGTTCCCCCATGTGACGTTCTTCCTGCTCATCAACAACACTGGGCCTCCAGGGGACAGCAACCTTTCCCAGCTGGCCATCAGGGACTCCGTCTCTGGGATAGCAGCCCTGCAGAGTGGGGGAATGGTGGTGGAGAAAGGCTTCCAGACCTTCACTATCGACTCACTGCCAGCAGGATCTCAGTACGTTGTGACGTACACTGCCCTCATCAAGGGTCACAAGAGTGAAATTCTGGACCTGCCTGCCTTCCTTACCTTCTCCAATGCATCACTGAATGACGTCAATATGTTTGGTCCAATGGTGGCTAATTTGACACTGAGGCTTAACTCCACGAACAAGATTTACCCCAATCACTATGTCCATTTTGCTGGGTTTATTGGTGGATTCTTTCTGTCCTTGTTGCTGCTGTCCCTGGGATTTCTGGCCATGAACCTAATATGTGCCCGcgccaggaaaaactccctagagcgAAGGAAAAAGCGAGGCGCTTCAGACCCTGAGTATGCGGTATGCAACATGAGTGAGACGGCCAAAGAAGAGGCAGCATTCGAGGACAAGATGGTGGACATCATGGTGCTGGAAGACCCTCAGAACATGTATCAAGCTCTGGAGAACCTGGAGATGTCCAGCCTGCTGCGAGCCACTTCCAGCCTGGAGAGCAGTCGGGTCCAGATGTACAAAGATGTGATCGCAGCCCTGCTGGCCGCGCTGCGCTCCCAGAACCACATGTCCCAGCAGGCCGAGCAGCGGCTACTGAGCGTGCTCCACGGCCAGTTGATGGGCATGGAGGGCAAGCTGAAGGAGGAGCACTTGGCACGCATGGCAACCCTGGCGGCCCAGTGCAACCTGGAGACCCGGGAGCAGATGGAGGCGGAGCATCGCAGAGAGGCCCAGGAGAAGGCCCGGGCAGAGGTGCTGTTTCAGCACTCTGACGAACAGGAGCTCCACCAATGCAGTGTCCTCCTGGAGAAGCTCCACAAGCTGAACCAGAGTCACCTCCAGCGCACCCTGCTGGTGAGACACGAGGAGGCCTCAGCCAAGGTCCAAAGGCAGATAGTGGAGTGGAGAAGAGTGGAGCTGCACAAGATCTTCTCAGAGGAGCTGGAGGAAGCCACCAGGATGTGCGAGCTGGAGAAGACCCAGGCCAGGAGTCTCCTGCATGACTACTTTGCCTATCAGAATCAGCTGGAGGAGGTGCTGGATGTGGTCCTGGCCAACCAACGTTGCATGCTGGGAGAGCGCCACGCCCAGAGGAGGTTCCTGGTGCACAGCCTCCACAGCCTGAAGGGCCTCATCTCCGAGACCTTCTCCAGGACCTCCAGCCAGATAGAGAACTGCTTCAGCCAGCATAGGAGGGGGAGCGATGTGTCTCAAGAGCAGGTGGAGCTGCTACTAGACAAGGCTCAGAAGGAGCTGTTGCTGGTGAGGCAGGGCCTGGATGAGGCTCTGAACCAGGAGAGGAGGGCCATGCACTGTGGCCTGGTCAAGAAGAGGAGGGACCTCATCTCTGACATGCTGCAGGGCCACAAGCAAAGGCAGAAGGAGCTGTCAGCCCTGTCCCGAGGGGGCCTGGAGGAGGACAGGATGGAGGTGGAGCCGGCCCAGCACCTCCGCTGCTGGCAGAGCCTGCTGACCGCCCAGTGCCTGGAGCTTGGGGAGCTCATCAACAACCTGGATGAGGAGGCCGCTGCAGACATCCGTAAGGTCACCATGCGTGTGATCCACAGCGCCATGGTGGAGGTGAAGGCCATCCAGCCTGCTGTCGCCCAGGCTCTGCTGGCCCTGGGGAACCCCCGTGACCCCCTCCAGCAGCCAGAATCGGGGTCCCCCATAGGGGCCAGCAGCAGCGCCCTGTCCCAGGCCCAGGAGAGGCTCCATCTGGAGGGCAAGGCGGCAGTGAGGACCCTCCAGGCCTCCAGGGACTCACTGCACCAGGGCATGGAGAGGgagctgcaggagcagcaggagctGAGGTCCAGGGGACAGGTCTTCTTCAGGTCTCTGTGCTCGTCACAGCTCACCTTATCGGACGAGGAGCTCCTACACATGAAGCTGGAGTTCCAGAACTGTCTGTCCAGGATGGACAACTGCCTAATGCTGCCCCACGCCCTCTCCCGCTCCAAACTGCAGGCCGCTCTGTCCACCTggaggaaggagatggaggagcaGGTTGAACATCCACAGCAAGAGAAGACGAGGACTAAAGGGAAATCCACTGAGGGCAGACAGCGAGCAGACCCCTCAGAACTGCTGCTCTTCCAGAAGAAGATGGAGGACAGGATACAGCTGTTTGAGAAAGAAAAAGAAATGGAGCGCACTGTGAGGGAGAAGgtcctgGAGGAGATGCGTAGCGTGAGGGAATCGGAGCTCCGGAATCAGGCAGACGGCCTGGCCGTGCAGATGGCCGCCCTCCACTACCAGAAGGCTGAGAGGAGGACCAGGGTCCTGGAGACCTCCAGAGCTCTGCTCACCATCCAGAGCCTGCTCACAGAAGAACTGCGAGCCAGCAGGAGCCTGGGGGCAGCCCCCATAGCCCAGAGCATCCAGAACCACTGTCTGGGTTTGGAGGAAGCGGAGCTCCAGCTCCAGAGAGAGCATGCAGAGTTGGAGAGTCTGGAGTCTGGACCCTCCAAACACAGACCACCCAAAGACCCACACTACtctgatgaggaagaggaggaagaggaagggcaAAGGAGGCTGTTTCATATAGAGCGTGACAGCCGCATGGCCACCATCCTTCACGAGGCCCTGTACACGTGTGATCAGGTCATTGTTCTGCAGACAGAGAGGCTGCAAGAGGCCAACGCTAGGAATCAAGCCATGGAGGATCTCAAGGAGCAGCTGGAGCTGAAGAGACTCTACACAAACTGTGACCAGGATCTGGAGTTTGCGGCCAGGTTGGTGAGGCAGAGCCAAGTCTCCACCGAGGTTCTCCTAGAGGctctccgcctcctcctcccAACCCTCCCCGAGTCGGAGCTGCTCTCACTCATTGATGCCCTCTGCCCCAAGCTATCGGTCTTTCCAGCGTCCGCAGAGCAGGAAAGCACAGCGTGGCCAGAGGGAGCAGGAAAATCTCTGCTGGTCAGACTGAGGCAGGAAATGGTGGGGAGGAATGCCTCAGCCCACAGCACGGACAAGGACAGAAACCAGTTccaggagaagagacagagccTGCTGGAGAGGCTGTTTCTCAATCCCAGACCCGAGGCTCGCAGGGACGTCATGCAAGTGTTGGTCCaggaaaaggggagggagggagttgttGCCATTCCCAAACCAGTCGCGACTGGAACGAGCCAAACCATAGCCTCGGAACAGCTCCAAGACTCTGTTCAGATttcagtgggaggaggaggagaggtggacagTGAAACTGTGTTTGTCTCCACTACTGCAGCAGTACCCTCCACCTCTGGCTCGGCCAACAATGCAGTAGTACTGGACATCCCCACTACGGGGGAGAGGGTGTTTGTGTTCCGCGTTCTGCCGGAGCCCCAGAACACGACAGGGGCCAccaacaggaagaggaagaagaggaactTTCTTAATCTGAAGAAGGGATCGGTGGCCCCCACAGACCAACCCTGAGCTTGCTGGTGGTTTCAAGAGGGTCTACTGTAGACACAGACTTGCCATTAGATTCCTACTGGTCCTATACTGAaccactagcctggtcccaggtctgtttgacTGAAGGAGTTggcaaaacagcacaaacagatctgagaccaggctagggGAACATGTGCCCTGTTAGACTCTGTTATGTGCTTTAAAATGTCCCACCTTTATGGTACTCAATGATGGTATTATGGTAACAATGAGCAAAATTATATGTATTAACGTTTAATTTAGTTGAAGTAGTCTCAAGGTACTGTAAAATAGCCATATAGTTGCAGGCTTTGTCTGTAGACAGCTAGTTTTTCTGATAATGAATGATTTGCACGTCTTGGCATATACATAAACCACATCACCATTATCAATATTTTAACTAATTTTATAAATACAATTATGATAAATAAGTACAAATGTTTATAAAAAATTGTATCGTAGAGTGTTCCTATCCATTGTATGTTAAAACACCTGCAACGGTCATTTTTTTGGCAAGCTTCAAAATAACAATCCCACAAGTTCAACCAATGTGTTacaactgtttttttttacaaattcataaaCGATCAATAAATTAATAATTATCAGTTTAGCTATATAAACTCAGTTTATTAACTAGGCCTACCTATAGCTCTGTAAATCGTTTCATTAACAGCCATACAAATGTTACCAACAtgcagtgatgtaaagtacttaagtaaaaaatactttaaagtactactgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1666129 lncRNA upstream 10558 47098965 ~ 47099165 (+) True G1456293
TU1666127 lncRNA upstream 13257 47096244 ~ 47096466 (+) True G1456291
TU1666126 lncRNA upstream 14378 47095139 ~ 47095345 (+) True G1456290
TU1666123 lncRNA upstream 19512 47089919 ~ 47090211 (+) True G1456287
TU1666122 lncRNA upstream 24131 47083967 ~ 47085592 (+) True G1456286
TU1666399 lncRNA downstream 64792 47199377 ~ 47199585 (+) True G1456539
TU1666457 lncRNA downstream 112291 47246876 ~ 47247152 (+) True G1456597
TU1666532 lncRNA downstream 236848 47371433 ~ 47372541 (+) True otop1
TU1666533 lncRNA downstream 238104 47372689 ~ 47372813 (+) True G1456668
TU1666536 lncRNA downstream 242197 47376782 ~ 47378517 (+) False G1456670
XM_036949987.1 mRNA upstream 307521 46512678 ~ 46802202 (+) True LOC110493976
XM_021568613.2 mRNA upstream 673197 46376260 ~ 46436526 (+) False LOC110493975
XM_021568614.2 mRNA upstream 673197 46376260 ~ 46436526 (+) True LOC110493975
XM_021568611.2 mRNA upstream 733736 46363032 ~ 46375987 (+) True tpra1
XM_021568610.2 mRNA upstream 748689 46354786 ~ 46361034 (+) True LOC110493973
XM_021568624.2 mRNA downstream 579 47135164 ~ 47136870 (+) True LOC110493981
XM_021568627.2 mRNA downstream 152342 47286927 ~ 47308189 (+) False LOC110493983
XR_002469224.2 mRNA downstream 152342 47286927 ~ 47308189 (+) True LOC110493983
XM_021568629.2 mRNA downstream 193717 47328302 ~ 47341231 (+) True lyar
XM_021568632.2 mRNA downstream 217647 47352232 ~ 47361786 (+) False LOC110493987
TU1664577 other upstream 1251222 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 1773200 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 1850152 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 2038798 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 2058718 45050729 ~ 45051005 (+) True G1453889
TU1666430 other downstream 93634 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 670773 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 698995 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 896329 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 1254497 48389082 ~ 48424405 (+) False LOC110494013

Expression Profile