RNA id: XM_021568624.2



Basic Information


Item Value
RNA id XM_021568624.2
length 878
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110493981
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47135164 ~ 47136870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTTGATAGTGACATGTGGATTGTTACAGCATGGGATGATACACTTTGTTGTCATCCTGAAGGATGTTGATAGCTGGAAGAAATGTCACGTTTCCAAAATGCACAGGAGCGCGTAATAAGTTTAATTTCCAGTTATGTTGCGCTTAGTGAATCTTCGACGTCACCATCTCTTTTTTTGTCACTCCCAACTACAAACTGCAAAGTTGCTCGACAAAGAACACACTCGTTTTGTAAAGCCCAAGCGTAGTTGCCTCTACAGAAGAATACTTTTTTTAACCGACGCAACAACGGGTAGAAAGATGAGACTCGCACCtttcttgtgtttcttcagttttATTTGGTTGGCAGATTGTGCACCACCGACATGCTATTCCCGAGTGCTTGGCTTGAGCAAGGAAATAATGGACCTTTTGGAAAAACTACACAATTATCATCTCACGAAAACCTGCGTGGAGATTCTGCCCAAGATGTTTCTGGATGTGCACAATTCGTGCATCGTGACCAAGCTCCGTGACTTCCTCTATGTTGTGGAGAACCTTCCTACACAGTACTGCAGAGAGCGTCCCAGGATCGCGTTGTTGAAGCGCAAAGTCAACAACCTGTACACAATTATCAACCGAATCTGTTATCGGGACCTAGTGTATTTCACAGATGACTGTGAGGccattgagactggacagagtacCCCTCGCTACGGAGAGGACAGGCTCCAGCTGCTGGTGGAAGAGAAGAGATGAGCCCATCCAGAGACAAACACACTCACGCTCACATGTGCAAACAGCgcacgtctcacacacacacacacacacacacaggaatggaTGTGTGAGGGTATGTAAACCCTGTTTCACTCaaaatcacatacacacacacataca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1666129 lncRNA upstream 35999 47098965 ~ 47099165 (+) True G1456293
TU1666127 lncRNA upstream 38698 47096244 ~ 47096466 (+) True G1456291
TU1666126 lncRNA upstream 39819 47095139 ~ 47095345 (+) True G1456290
TU1666123 lncRNA upstream 44953 47089919 ~ 47090211 (+) True G1456287
TU1666122 lncRNA upstream 49572 47083967 ~ 47085592 (+) True G1456286
TU1666399 lncRNA downstream 62507 47199377 ~ 47199585 (+) True G1456539
TU1666457 lncRNA downstream 110006 47246876 ~ 47247152 (+) True G1456597
TU1666532 lncRNA downstream 234563 47371433 ~ 47372541 (+) True otop1
TU1666533 lncRNA downstream 235819 47372689 ~ 47372813 (+) True G1456668
TU1666536 lncRNA downstream 239912 47376782 ~ 47378517 (+) False G1456670
XM_021568621.2 mRNA upstream 579 47109723 ~ 47134585 (+) False LOC110493980
XM_021568622.2 mRNA upstream 579 47109723 ~ 47134585 (+) False LOC110493980
XM_021568623.2 mRNA upstream 579 47109723 ~ 47134585 (+) True LOC110493980
XM_036949987.1 mRNA upstream 332962 46512678 ~ 46802202 (+) True LOC110493976
XM_021568613.2 mRNA upstream 698638 46376260 ~ 46436526 (+) False LOC110493975
XM_021568627.2 mRNA downstream 150057 47286927 ~ 47308189 (+) False LOC110493983
XR_002469224.2 mRNA downstream 150057 47286927 ~ 47308189 (+) True LOC110493983
XM_021568629.2 mRNA downstream 191432 47328302 ~ 47341231 (+) True lyar
XM_021568632.2 mRNA downstream 215362 47352232 ~ 47361786 (+) False LOC110493987
XM_021568630.2 mRNA downstream 215377 47352247 ~ 47361786 (+) True LOC110493987
TU1664577 other upstream 1276663 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 1798641 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 1875593 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 2064239 45069971 ~ 45070925 (+) True G1453914
TU1663579 other upstream 2084159 45050729 ~ 45051005 (+) True G1453889
TU1666430 other downstream 91349 47228219 ~ 47228796 (+) True G1456570
TU1666845 other downstream 668488 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 696710 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 894044 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 1252212 48389082 ~ 48424405 (+) False LOC110494013

Expression Profile