RNA id: XR_002469224.2


Basic Information

Item Value
RNA id XR_002469224.2
length 1918
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110493983
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47286927 ~ 47308189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACGCACCCATACGTCGCAAAAATATGACGTTGAATGTGGTGACGTGTCGCTGTTGACAGTGGCGTGTGCTGCCGTGCTACTGACAGAAATGGCTGTTGATATAACTGTACTGTTCAAAGCCAGTGTCAAAACGGTAAAAACACGAAATAAAGCTATCGGAGTAGGGTTTGATTTGCCTAAAGATGAAATCTTCAAGAAGAGCAGACCCAAACATGGATTTTCTCTCAAGGCGAAGGAAGTGATCTCCAACATCACCAAGCTGAAAGACTTTCTGCTGCAGCACAGGAAGGACTATGTGAATGCTGGAAGTCTCATCTCGTCAGACCTAACCCGGATGACAGACAATGAGCGAGACCAGATCGACCAGGACGCCCAGATCTTCATGAGAACCTGCTCTGAGGCCATCAAGCAGCTCCgctctgaagCCGAGAAGCAGGTCATACCGACACAGATCAGAGAGCACAGGGGGGCGGTCCTCGACCTCGTCGAGATATATTTGAGAGGAGTATGCAAGCTTTACTCCGAGCAGAGGGCTATAAGAGTGAAGAGAGTGGTGGACAAGAAGAGACTGTCCAGACTAGAGCCAGAGCACCACCACAGTAGGGTGGCGGTAGAGCGAAGCTCACCGGCGGAGCAGCACAGCGAGGAGAAAACCGCTAAGGAGGAGAGCAGCAGCGGTGGTGAGCGGAGCGTGACGGAGGTACCGGAGAACAACGTGAGCCTGTGGGAGGAGGGCCAGGGCCGTGTGGAGGACGAGCTCTCGCCTGAGGAGATGCAGATGTTTGAACAAGAGAACCAGAGGCTGGTGAGTGAGATGAGCAACCTAGTAGATGAAGTCAGGCAAATCGAGGGCAAGGTCGTCGAGATCTCGCGACTCCAGGAGATCTTTGCGGAGAAGGTGCTAATGCAAGAAACTGATATCGACAGTATCCATCAGCTAGTTGTGGGAGCCACTGAAAACGTTAAAGAGGGAAACGAGGACATCCGAGAGGCCATCAAAAACAATGCTGGATTCCGTGTCTGGATCCTCTTCTTCCTTGTCATGTGCTCCTTCTCTCTGCTCTTCCTGGACTGGTACGACAGCTAACCCCCTGAACCTGGCAGAACCAGGAAGTGACATCAGCCCGGGCCTAGCCCTTCACATTGAAGTATATGGTTGGATGGACAGTGTTGGGTCTAGGACCAGCTTTTCCTAAACCCACCCCCCAGAAAACTGACCCCAGACCAGTGCTTTGATGATGACTTCACTACATGTCAACCGTAATTGAGCCACTAGAAGTCAGTGTAAATGCATGTTACTATGTAACTCTTCCTGTTCAGCAAAGCACGCTTTTGGCCGAATACAAAGTGCTGTCATCCACCTGCACTGTGTATATATGGGCAGTCGGTATCGCATACATACTGACCACTATGCTTGTTATTGCATCAACAGCAACTGTCCTCTGCTGTCTTTCTCAAAAGAAGGAAGTGGTTTCTGAACTATTAGTCTTTCTGTATTGAGATCTTGATATTGTGTACTTATGCTTTGTTGAGatgaagaaaatgtttttttaaacccTTGTGGTCTTTCATATGTATTTATTTCAATGGTATGTACACATTTAGAAGATATgagataattaagcaataaggcccgatgGGctgtggtatattttGTCATACCACAGCTTTCAGGGCTCAAACCCCCCGGCTAATAATTACTAATATACCATGAGTTAAGGCTAAGCTTTTGCAGATGGGatattttcatgaatagttattGAGTTACAATGAGCGTGTAAGCCTTTTGTTTGTGTGAAGATGGTGGTTATGATCAATCAATGGGAGTATTTGTGTTGGTATAACTTCACATTGCACCTTACACTGCTTGTGTAAAAACCTGGTCCGATCaccaataaaatgaatcactacttatg

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08492 STX18; syntaxin 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1666457 lncRNA upstream 39775 47246876 ~ 47247152 (+) True G1456597
TU1666399 lncRNA upstream 87342 47199377 ~ 47199585 (+) True G1456539
TU1666129 lncRNA upstream 187762 47098965 ~ 47099165 (+) True G1456293
TU1666127 lncRNA upstream 190461 47096244 ~ 47096466 (+) True G1456291
TU1666126 lncRNA upstream 191582 47095139 ~ 47095345 (+) True G1456290
TU1666532 lncRNA downstream 63244 47371433 ~ 47372541 (+) True otop1
TU1666533 lncRNA downstream 64500 47372689 ~ 47372813 (+) True G1456668
TU1666536 lncRNA downstream 68593 47376782 ~ 47378517 (+) False G1456670
TU1666538 lncRNA downstream 69502 47377691 ~ 47378473 (+) False G1456670
TU1666542 lncRNA downstream 69502 47377691 ~ 47378517 (+) True G1456670
XM_021568624.2 mRNA upstream 150057 47135164 ~ 47136870 (+) True LOC110493981
XM_021568621.2 mRNA upstream 152342 47109723 ~ 47134585 (+) False LOC110493980
XM_021568622.2 mRNA upstream 152342 47109723 ~ 47134585 (+) False LOC110493980
XM_021568623.2 mRNA upstream 152342 47109723 ~ 47134585 (+) True LOC110493980
XM_036949987.1 mRNA upstream 484725 46512678 ~ 46802202 (+) True LOC110493976
XM_021568629.2 mRNA downstream 20113 47328302 ~ 47341231 (+) True lyar
XM_021568632.2 mRNA downstream 44043 47352232 ~ 47361786 (+) False LOC110493987
XM_021568630.2 mRNA downstream 44058 47352247 ~ 47361786 (+) True LOC110493987
XM_021568634.2 mRNA downstream 56882 47365071 ~ 47372581 (+) False otop1
XM_021568635.2 mRNA downstream 66447 47374636 ~ 47376700 (+) True LOC110493989
TU1666430 other upstream 58131 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 1428426 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 1950404 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 2027356 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 2216002 45069971 ~ 45070925 (+) True G1453914
TU1666845 other downstream 497169 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 525391 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 722725 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 1080893 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 1385132 48693321 ~ 48721244 (+) False bsnb

Expression Profile