RNA id: XM_021568629.2


Basic Information

Item Value
RNA id XM_021568629.2
length 1616
RNA type mRNA
GC content 0.45
exon number 8
gene id lyar
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47328302 ~ 47341231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAATAATGTAACACTTCCTGGCTTGAAAGAAGTCGCGTGTTTTTAAACTTTTGCACTGACGAACCTACATGGGTTTTTTCCCCCAACGTCTTTGTATTGCTACTACAGCTAATGACCTATGTAGTAGCTTCATATAATTCATATGACGCAATGTTAGTTTGAAATGCCGTTGTAACTTAGTAAGTAACAAGCTTGTTCCTTTCATGACTAGTGTAAGCTGGCTAGCCGGCTAACGTACGCTAGCTACCGCCCGGTAAGTTAGTTCAGGATTTGTTGGCCCCTGCCATGTGTCTCACTCTGTATCGATTAAAACGTAATTTGGCATAGTATATAGCAAGCAAGGCAACGTTGTCCAAAAGGAATTTGTTTTCATTGAGTTCATTGACTTGTGTTAGTTGGTAGTATTCATTGAGACTTAAAAGAACGGTAGTATCAGCTAACGTTAGTCCAACATGGTCTTCTTCACGTGCAATGCGTGTGGTGAATCACTAAAGAAAGCCCAAGTCGAAAAACATGTGAACATGTGCCGTGGATGTGAAATTTTGTCATGCATTGACTGCGGAAAAGACTTTTGGGGAAATGACTACAAGAACCACATCAAATGCATCAGCGAGGATCAGAAGTATGGAGGCAAGGGCTATGAGGCTAAGTCCAACAAAGGGGATGTCAAACAGCAACAATGGATTCAAAGGATCCAAGAAGCCATGAACAAACCAGGAATCGGTGCCAAGCTGAAAGATGTTCTAAATCAAGTCAGTTCGTATGACAATGTCCCACGAAAGAAGTCGAAGTTCCAGAACTGGATGAAGAACAGTCTGAAGATCCACAATCCCACGCTGCATGACCAGGTGTGGGACATCTTTTCAGCAGCAACCAGCAGCCTGGCTCCCGAAGCCCCGAATCAGACAGAAGAACCTAGGCAGTCTGTTGCTGAAAGCAAGACCGAGACTAATGGGAGCCATCAGAATGGCACATCGGATGAGCCACCACCAGAGAAGAAGAAGTTGAACAAGCGTGAGCGCAAAGAGGCAAGACAAAAGAAGAGCgggaagaaagaaaagaaagccCTGGAGAACGGTAGCACCGAGGAGGAGGAAGCAAGCGCAGGCAAACGAAAGGACAAGAAAAGGAAGAGGAGTTCTGAGGAAGATGGGGAGCAAAAAGGCCACGATGCTGGAGGAGAGGTGACCACCAAGAAACGGAAGACCAGTAAAAAGGACAGTTCCGAAGATGACCAAAACACAGAGGCGGCTGAGGAGGAAGCAGAGGGTGCTGCAGGAGAAGCAAGTTCCAAAGGCAAGTTCAATTGGAAAGGAACGATAAAGGCAGTCTTAAAACAATCTCCTGAAGAAGGACTTGCGGTGAAAAAACTCAGGAAGAAGGTTTTGTCAGCTTACTACTCATTCAGCGGAGAGGGGAATTTCAAATCGGAAGAGGAGCTGCTTGCACTCTTCAACAAGAAGATTAAAGGCAACCCCAAGTTTAGAGAATTAAAAGACAAAGTTAGACTTGTGAAGTAGATCATGAATTCCAGCATGGCTGTTTTAACAACTCACCGTTGTCTTCAGTGGTATGCGTGTCATCTGAAAgattaaatcatttttcaacACCAAG

Function

GO: NA

KEGG:

id description
K15263 LYER; cell growth-regulating nucleolar protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1666457 lncRNA upstream 81150 47246876 ~ 47247152 (+) True G1456597
TU1666399 lncRNA upstream 128717 47199377 ~ 47199585 (+) True G1456539
TU1666129 lncRNA upstream 229137 47098965 ~ 47099165 (+) True G1456293
TU1666127 lncRNA upstream 231836 47096244 ~ 47096466 (+) True G1456291
TU1666126 lncRNA upstream 232957 47095139 ~ 47095345 (+) True G1456290
TU1666532 lncRNA downstream 30202 47371433 ~ 47372541 (+) True otop1
TU1666533 lncRNA downstream 31458 47372689 ~ 47372813 (+) True G1456668
TU1666536 lncRNA downstream 35551 47376782 ~ 47378517 (+) False G1456670
TU1666538 lncRNA downstream 36460 47377691 ~ 47378473 (+) False G1456670
TU1666542 lncRNA downstream 36460 47377691 ~ 47378517 (+) True G1456670
XM_021568627.2 mRNA upstream 20113 47286927 ~ 47308189 (+) False LOC110493983
XR_002469224.2 mRNA upstream 20113 47286927 ~ 47308189 (+) True LOC110493983
XM_021568624.2 mRNA upstream 191432 47135164 ~ 47136870 (+) True LOC110493981
XM_021568621.2 mRNA upstream 193717 47109723 ~ 47134585 (+) False LOC110493980
XM_021568622.2 mRNA upstream 193717 47109723 ~ 47134585 (+) False LOC110493980
XM_021568632.2 mRNA downstream 11001 47352232 ~ 47361786 (+) False LOC110493987
XM_021568630.2 mRNA downstream 11016 47352247 ~ 47361786 (+) True LOC110493987
XM_021568634.2 mRNA downstream 23840 47365071 ~ 47372581 (+) False otop1
XM_021568635.2 mRNA downstream 33405 47374636 ~ 47376700 (+) True LOC110493989
XM_021568639.2 mRNA downstream 387193 47728424 ~ 47742589 (+) False idh3b
TU1666430 other upstream 99506 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 1469801 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 1991779 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 2068731 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 2257377 45069971 ~ 45070925 (+) True G1453914
TU1666845 other downstream 464127 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 492349 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 689683 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 1047851 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 1352090 48693321 ~ 48721244 (+) False bsnb

Expression Profile