RNA id: XM_021568634.2


Basic Information

Item Value
RNA id XM_021568634.2
length 4844
RNA type mRNA
GC content 0.45
exon number 6
gene id otop1
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47365071 ~ 47372581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAATTTTGACTTTACTTATATCCCCctcacataaaaaaaacaatcccCTTAGTGCTCTAGATGTTGCCAAAGACGATTTCATTTCGGGGGGAGGGGGGAATTCTCACTGATGATGAGTCCTCCTACTTAAACAAATCCATTTACAAAAAGGGCCATTGTAAATTCGACCATTGAAATCCGATTCAGTTTTTTTCACTCTTGGAAAGCATAGTTCTTAACCATGACAAGGCAAGTGGAGGTACACGTTAACGGACTATTGGACTGAGGGGCGGTTGGGTACGACCACATTTGGAGTGTTGGGAACACTCTTAGCCCCATACCTCGCCTAAGTGGTTTGACAAATATCGTTTTCTTTTTATCTTACACGGGATAACCCCTCAAAACGGATTTCAGAGACTTGGATAGAAGTGCTAGTTGGCAACGACTATAGAAACGAGGATCCGTTGACGAAAAAGCTTTTGGGGGATTAAGTTATTCCCATGATCACTTATTTTTTAATGTAGATTAAGTGAAAGGTTGGCACTACTAGTCCACCAATTTAGCAAAAAAACGTGTGACAGGTCCAACCGGACCACGGACGGCGGTCACCGATGGCTGAAACTCAATCTATTAATCTGAATTCACACAGCTAGAGGGTATATGATGCGCTATAAAGTAGCCTAATTTCAGCTAAATGGTCCAGGGTGACAATATGTTACATCAAACACACCATGTTTGTGAAACTGGACACTGAAAGCATGCGAAACAATTGAGACCGTCTTTGGATTGAATCAACATGCAATTGGCACAGTTCCTATCCATTTGCGTCCCCGCCTTGTTGCAACAGGTTGCGCGCGTGGCCTTCCACAAATGCACTTATAGCGCACAGTTTTGACTTTGCTCTTACTTTCTGACTCGAATGTTACAGATTTCGGCGCCATGGTTGAGCACGGAGGCCTTGATCTTATGTGTTTAAATAAGTCCTACAGTCACAGTTCCACTACCTCGTCCTCCAGTTCAGAGCGAGAAAAGAAAATATTCACCAAGTTGAAAGTCAGTTTGACTGAGGACTATCCGCAGAAGAACGCGGAGATCCTGAGCGGCCAGTATGGGACTAACTTACTTTTGATCGGCGTGTCGCTGATGCTGGCTATTGCGCACCATGGCGCATCAGTGAAGGAAGAGCACCTGTTGTCGTTTATCACGACCCTCATGATCCTCCAGCTGATATGGATGATATGGTACATCGTGAGCAGAGACAGGCAGAGTAACTTACAGCCTGAAAAGGATGTGCATGCTACTACCTGTTGGATAAGAGGTGGGTTAACTCTTCTTGCGCTCCTCTCGTTGATCATGGATGCCTTCCGAATTGGTTATTTTGTGGGCTATCGATCATGCGTGTCGGCTGTTCTAGGGGTATACCCTATCATCCACGCAACTCACACGATAGCACAGGTTCATTTCCTTTGGTTTCACATCAAGGACGTCATCAAGACCTTCGAGACCTTTGAAAGATTTGGCGTCATCCATGCAGTCTTCACCAACCTGCTACTGTGGTGCAACGGTGTGATGTCTGAGGCTGAGCACTTCCTAAACAACCACAAGAGAAGGCTCTCTTCCCTGGGCTATGTAAACCTCACCATAGTGGATATGGAGCCTCACTGTAATTGCACTACCAGCGCCTGCTCCATGTTCTCCAACAGCCTCTATTACCTATACCCCTTCAACATAGAGTACCACATCTTTGTCTCTGCAATGCTCTTCGTCATGTGGAAGAACATAGGGCGCAGCATTAACCTCCAGTACAACCGGAAAAGGCCGGCTACCAGGACCCAGGGGCTGGTTGTCGGCCCCATCCTGGGTCTTGTCGCCCTGGCCAGCACCATCGGCGTGCTGGTGGTCTATATCATCCACGTGGAAGAGTCGATGGACACCCGGGAGTCGGCCATCGCAATGTTCTACTGCTACGGCATCGTCATGCTGGTGTTCATGTGCTCGGCCGGGGCCACGGGTCTGCTCATATACCGTGCCGACCCTATGCCCATGGACACCACCAAGAACCCCTCGCGGACGCTGGACACAGAGATCCTATTCGGATCGTCGGTGGGCTCCTGGCTCATGTCCTGGTGCAGCGTGGTGGCTGTGGCAGCCTCAAGCAGCAGCCCGAGCTACCGCTGGACCAACCTGATGTACTCGCTGCTCATTGTCCTGGAGAAGTACATCCAGAACCTGTTCATCATAGAGTCCCTCTACCGCCAGCGGGAGGACGGTGAGAGGGAGGACGCTGAGGCGGCGGGGCCTGTGCCGGAGATCTTCTCTGTGACCTCCTCCTTGGCTCCGCCCTACAACGGCATCATCAACCGGGCGTACGAGAACCCAGACAAGGGCTGTGTCACGCTGGAGAACGAGCAGGTGGAGAACGGACAGGTTTACGGAACATTCAGCTCACGGAAACATTCGGCGGTGCCCCTGCACGCCGGGAGCAACGTGGCGGAGACCCCGAGCAAGAAGAGGCAGATTCTGAAGAACATCGCTGTCTTCCTCTTCATGTGCAACATCTCACTCTGGATCCTTCCTGCCTTCGGCTGCAGACCCCAGTATGACAACGGCCTGGAGCAGGAGACGTTTGGCTTCACCATATGGACAACAGTTCTCAATTTTGCCGTGCCCATGAACCTCTTTTACCGCATGCACTCTGTGGCCTCCCTCTTCGAAGTCTTCCGAAGGGTGTGACAAGACAAAGAGGGACCGACGAGATGACGCAACATGCACAAGAACACTTGTCACCAAGGGCTCCATAGAGGAAATTAATAGCAACACAGGTCAACCTTTCAGGAGGAGCTCTTGTCATGTACTTTAGACTTCTAAATAAGCATTGAAACATGTCAGTTTAGGGGGATTATACTAGATGAGATGTCCCTTGTAGCGATGCATCTTCGGAAACATTTTGTAGCACCAGATATAAACAACAAATTACATTGATATCAGACCCTGGATTCAAATAGTATTCggaatctttcaaatactttagctgtgcttgattgagctggCCTGGCACAATGTAACCAATGGAATAGCCCCAAATGTGCAAGAACTGATCCCCCGCCCCCGGAGGCTCACCCAAAACGCCAAAGtctttgaaagatttcaaatagtatttgcttTGTTGTGTGTTGCTGCACTGAAAAGTGAAATTGACATTTGAATTTAGGTCTCTGTTATAACAAGTGTTTGGGTTTGTCTTTTTATGTTCATCAAATTTTTGTTGAATGCGTTATTAAAACGCGTATGTAATAGTTTAGTGTCGAGTTGTCTCTCAGACCTAGTACAGATGTAAGCCAGGCTATGTATGAATGCATCATGAGAGTGGAGCATGATAAGTGATGATACACGATGAAAGTAGATGGTGCAGTGAAACAACTTATATCGAAAAGCCATGCCACATTCATTTTTCAAATCCCGTATCATGGTGAGACTAGTGGGCCTCATCCCCGGTTGTGCTGATATCACACACACCACTGTGTTTGCAGCAGTACTCCAACATCACAGAGAAGCCAAAGAAGCTCTCTCGGTCTCGATTATTCAACGTCACATAAGAACTGTACTATGGATTGTAAAGATGAGGTGCAACTGTAAAAGCCTTaaaggttgtttttttttgtgtgtgtgttgccatttTTATGCATATTTCAAATGCACAGTGTCATGGAGGATGTTCTCAGTGGTCAGAAAAATACACAGGAAACTCAATACTTCTGTGTCCAACACTTGAACTACTTGGCTGGCCACATTCTAGAGTCCTACATGTACTGTAGTATAGGGCGGCGCTAGACTTTGATTGCTCTTCGGTGTAATATTGGACTGTAGTTCTCAGAATCTCCAACAAATGAACACTGGACTGTAGTTCTCACAATCTTTCGCAAACGTCTCATTGTATTGACTGTCCTCAATCATGACTTGTTGACATCATTCCGTGTATATTTGATGACATACACATTCAGTTGAATGCTGTACAGTGTTGACTGATCTTTAATGCTAGTAGCTCTCCTTTTCTTTTAGttatattttttcttcttctaatgAACCTGAAATGTGGTTTccttaaatatatttaacatttcAATAATTGTTATGGAACTCAATTTCACTAAGAAACCGCCTGGGAGTGTGTGAAGCGTGCTCCAATCCACACTGATGTATTCCCTGGACCCATATTAAGCCTAGTTCTGGACTAAAACAaatgctcaatggagaatctccattgaaagtgtCCGTAAACTGGCCACCGTGCCCCATTTGCTCTCCCAATCCATAATGTTGGTGAAGAGACTAAGTATGCACTCTGCATTTTAAAGggacaatctgcagttcaaacaacacCAAAGTGTTCCAccctgccactgttttggtaaacagcagAAGAATAGGGCGGTTATTATGTTATTGAAAAGGGAAACAATACAATATTTGCACAgatcagtatatactgtattgactGACATGCATTTTCCAAAAAGCAAATATGTTGTTTTAAACTGAAACAACCCTGAAACTGAACCAAATATCTTGATTGATGTAGTTTTTGAAAAGTAAGCGTTGACAATAATCTTAACCTGTGATGTTGTTGATCGATTTTGTGATGAATTAGTGAAATGTAGTGCTACTGTATGGTTCATTTTTGGACAACATATTTAGGCTGTAGGGACTATCAGAAAACTGTGAGTTCTACATTGGTGCTAACTACTGTACTTGTTTTCAGTTGTACGTGCCAATCTGTGGTCAATGCTTATTGGTAAACCTGCACCAATACTATATCCTCCCTGTGTACATATCTGAACGTAGATTAAAGTGAATGTACATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1666457 lncRNA upstream 117919 47246876 ~ 47247152 (+) True G1456597
TU1666399 lncRNA upstream 165486 47199377 ~ 47199585 (+) True G1456539
TU1666129 lncRNA upstream 265906 47098965 ~ 47099165 (+) True G1456293
TU1666127 lncRNA upstream 268605 47096244 ~ 47096466 (+) True G1456291
TU1666126 lncRNA upstream 269726 47095139 ~ 47095345 (+) True G1456290
TU1666533 lncRNA downstream 108 47372689 ~ 47372813 (+) True G1456668
TU1666536 lncRNA downstream 4201 47376782 ~ 47378517 (+) False G1456670
TU1666538 lncRNA downstream 5110 47377691 ~ 47378473 (+) False G1456670
TU1666542 lncRNA downstream 5110 47377691 ~ 47378517 (+) True G1456670
TU1666579 lncRNA downstream 42031 47414612 ~ 47415612 (+) True G1456699
XM_021568632.2 mRNA upstream 3285 47352232 ~ 47361786 (+) False LOC110493987
XM_021568630.2 mRNA upstream 3285 47352247 ~ 47361786 (+) True LOC110493987
XM_021568629.2 mRNA upstream 23840 47328302 ~ 47341231 (+) True lyar
XM_021568627.2 mRNA upstream 56882 47286927 ~ 47308189 (+) False LOC110493983
XR_002469224.2 mRNA upstream 56882 47286927 ~ 47308189 (+) True LOC110493983
XM_021568635.2 mRNA downstream 2055 47374636 ~ 47376700 (+) True LOC110493989
XM_021568639.2 mRNA downstream 355843 47728424 ~ 47742589 (+) False idh3b
XM_021568640.2 mRNA downstream 355843 47728424 ~ 47743582 (+) False idh3b
XM_036949991.1 mRNA downstream 355843 47728424 ~ 47743582 (+) True idh3b
XM_021568643.2 mRNA downstream 371775 47744356 ~ 47790013 (+) False LOC110493993
TU1666430 other upstream 136275 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 1506570 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 2028548 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 2105500 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 2294146 45069971 ~ 45070925 (+) True G1453914
TU1666845 other downstream 432777 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 460999 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 658333 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 1016501 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 1320740 48693321 ~ 48721244 (+) False bsnb

Expression Profile