RNA id: XM_021568635.2


Basic Information

Item Value
RNA id XM_021568635.2
length 2065
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC110493989
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47374636 ~ 47376700 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGCGAGGTAATAACATGCGGTCGCCAACGCGCTTCAATCTTTTGGCGCACCGAACACCCAGTTCGGTTCAGCGTGGATGCAACACATTTGTTGCAAATTCACTAAGCAATCTCAAATCCTTTGTTTGTATATTTATTTCAAATAGAATGGCTGACGAAGGGACGACAGAGCACCGTGAGTTGGTTAGTACTGCGTCCTCAGACGCGCATGGCGCTATGGACTGGCTTTCCACCTGAGAGGACACAGAGAACCCTGCGAAATACAACTCAGTGCATAAGAACCACTCCGTTCCGTTATCTCTTGGGGAGATTATGTGGAACTCGACCGAATCGGAGGGAACATCCGACGGTGGAAAGGAACTGGTCATCCGGACAGTGACGGGCTGTTTGCTCTCACTGCTCATCCTATGGACACTGCTGGGAAACCTTATGGTGTGCTCTGCCGTGCTACGAATTCGGCAATTACGAAGTAAAGTGACCAACATTTTCATCGTTTCTTTGGCTGTGTCGGATTTATTCGTTGCAATTCTGGTGATGCCATGGAAAGCTGTGGCTGAGGTGGCGGGGTATTGGCCATTTGGCACTTTTTGTAATTACTGGGTGGCGTTTGACATTATGTGCTCAACTGCGTCTATCCTCAACCTCTGCATTATCAGCGTGGATAGATACTGGGCCATATCAAGTCCGTTCCGCTACGAGAGAAAAATGACCCAACGAGTTGCCTTTGTGATGATAAGCGTCACGTGGACTTTGTCTGTTCTCATTTCATTCATACCCGTCCAACTGAACTGGCACAAAGCCAGCGAAGACGAAAGAGTCAGAGCGCATAACGCCTCCCTGGGTCAAGTAGAGGAAAACTGTGACTCTAGCCTCAACAGAGAATACGCCATATCGTCATCTTTAATAAGTTTCTACATACCCGTAGCAATTATGATTGTGACGTACACGAGAATCTATCGGATTGCTCAGATCCAAATCAGGACTATAGCGTCCCTAGAGCGCGCGGCAGAGCACGCCACAAGTTGCAGGACCAACAGACTCGAGTGCCAACACCACAATACATTGAAAACGTCTATTAAAAGGGAAACCAAAGTTTTAAAAACGTTATCGATCATTATGGGTGTTTTTGTGTGTTGTTGGTtacctttttttattttgaacTGCATAGTTCCATTCTGTGACAAACCACAGACTGACCAAGATGCAAGTCTCCCGTGCGTCAGCGAGACAACATTTGACGTCTTTGTGTGGTTTGGCTGGACTAATTCATCCATGAATCCTATTATTTACGCTTTTAACGCAGAGTTCAGAAAAGCATTTGCCAGTCTGCTGGGTTGTCGTAATTTCTGCTCCAGCACACCAGTTGAAACTGTGAATATTAGCAACGAGTTGGTCTCCTACAACCAGGACACACTTGTCCATAAAGAAATCGTGAACGCCTACGTCAATATGATCCCCAACGTAGTGGAATGCATTGAGCACGAGGACACGTTTGACAGGATATCACAGCTAACTCACAACAATGAAAATGGCACCGACTCCGTTTGTGACTTGGACGACTGTGAGGAAGAGATTAGCATCGACAGGATGACACCATTTACCCCCAATGGTTTACATTGAATTCACTTGTCTCACCTCGTGCGTAAGAGGATGTATTGCTTCAATCAGATATGTGAGATGTGGTGTTGTTGTCCCATGCTGAAAAGTGACGTACATTTGTGTCTTATAAGAGAAGATACCAGTCTTTGTTTATTCATATGATCTCTAAAAGTTCTAGCTTCTATGTATTTGGAGCAGCAGATGTATTGAAACCAGTTGCTCCAATTGGTACAAGTTACCCTAGATGGTATTCAGAAATGACTGCTTATCATAATCCGATCAATGACAGTGGGACTACCGTCCTACATACTATGGAAAATATGGTAAACCTTACAGGTGCAGTGTAGCCACATGCAGTTGTGTAAATGCCTTATTTATTCTGGGAAAGAGTGCAATATAATTTTTAAAACAAGGGGAATGTTAAAGGATTACAAAATGTTTAATTTACATGAGGCCAACATTAAA

Function

GO:

id name namespace
GO:0007212 dopamine receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004952 dopamine neurotransmitter receptor activity molecular_function

KEGG:

id description
K05840 DRD5; dopamine receptor D5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1666533 lncRNA upstream 1823 47372689 ~ 47372813 (+) True G1456668
TU1666532 lncRNA upstream 2095 47371433 ~ 47372541 (+) True otop1
TU1666457 lncRNA upstream 127484 47246876 ~ 47247152 (+) True G1456597
TU1666399 lncRNA upstream 175051 47199377 ~ 47199585 (+) True G1456539
TU1666129 lncRNA upstream 275471 47098965 ~ 47099165 (+) True G1456293
TU1666536 lncRNA downstream 82 47376782 ~ 47378517 (+) False G1456670
TU1666538 lncRNA downstream 991 47377691 ~ 47378473 (+) False G1456670
TU1666542 lncRNA downstream 991 47377691 ~ 47378517 (+) True G1456670
TU1666579 lncRNA downstream 37912 47414612 ~ 47415612 (+) True G1456699
TU1666590 lncRNA downstream 49555 47426255 ~ 47478036 (+) True G1456708
XM_021568634.2 mRNA upstream 2055 47365071 ~ 47372581 (+) False otop1
XM_021568632.2 mRNA upstream 12850 47352232 ~ 47361786 (+) False LOC110493987
XM_021568630.2 mRNA upstream 12850 47352247 ~ 47361786 (+) True LOC110493987
XM_021568629.2 mRNA upstream 33405 47328302 ~ 47341231 (+) True lyar
XM_021568627.2 mRNA upstream 66447 47286927 ~ 47308189 (+) False LOC110493983
XM_021568639.2 mRNA downstream 351724 47728424 ~ 47742589 (+) False idh3b
XM_021568640.2 mRNA downstream 351724 47728424 ~ 47743582 (+) False idh3b
XM_036949991.1 mRNA downstream 351724 47728424 ~ 47743582 (+) True idh3b
XM_021568643.2 mRNA downstream 367656 47744356 ~ 47790013 (+) False LOC110493993
XM_021568644.2 mRNA downstream 367658 47744358 ~ 47790013 (+) False LOC110493993
TU1666430 other upstream 145840 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 1516135 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 2038113 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 2115065 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 2303711 45069971 ~ 45070925 (+) True G1453914
TU1666845 other downstream 428658 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 456880 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 654214 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 1012382 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 1316621 48693321 ~ 48721244 (+) False bsnb

Expression Profile