RNA id: XM_021568644.2


Basic Information

Item Value
RNA id XM_021568644.2
length 3601
RNA type mRNA
GC content 0.54
exon number 22
gene id LOC110493993
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47744356 ~ 47790013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgatatttttcagatctgattggtcaatataccaattagtgaaaattatctatatccgaaatgggctgcctgtgtaaacgcagcctatgtGATAGACATGACCAGATGGCGGACTCCTGCTCTTCTGCATAGGGCTGCTGTTGTTGACTCGGTTTCGTGACGATGTCACAGATTCACCGCCAGATGTCGCACCGGCgctatggatggagggagaggaggggccaGGACTGGGAATTCTCTGCTTCCCATCCCTCCTTAATGCAGACAACATGGCGGACTAAAAGATACGGCTGACCCGCCCGGATACAGCGAATAAACAGTGGGATTCACGCCCCCTATGCTCAACGAAGACGGAGAGACACCAATTTGTTAGAAACACCCTCGGGAACATTGAGGAATTTTTGGGACCGTTCTAGTCATTCGTTAACATAAACATACTTGCGATCTGTTGCCTCCAAATTGGCGGTCTGTCCCAGTTCGTTCATATCACCCAGGCCCCccaccccacatacacacactattGGTTCCTGGGGTGTGAAGACAGGGGCTGGGGTTAAGAACGTGGAAAAAAGGAAGAAAGGAATTGCACAACTGTAAATATTCAGGATTGTGCAAAACCAAACGGAAGTCGTGGACCACACTGTGCGAATGAGTGATTGATGCCAAATTCGCTCCTTAAGGGCAGTATGGGTGTGTGTCCCCTGCTCCTGCTGCTCAGTGTGGCCCTCGGGGTCTCTGTCTCAGCCCAGGAACCATCTCTCACCCCCACAGAAGGTCCAGTCTCCACTGCCAAACCCACGGATTCCCCAGCCACCACCCTCCACAATGTTCCAGTGGCAACAACCACCACCCCTCCAACAGCCGCAACGACACTGACAACAACCAGCACCGCAGAGGGGAACATATTGACTGCAGGCCCCAGTGTCACCCAGGTGCCCatcccccctccaccaccccctgGCCCCACCATAGCCCCCCAAGTCCCCACGGGTGCAACCACTGCCCCGCAACCACCCCCTGCTCCGACCACGGTCAGTCGGGGTGGGGAGAATGGGACCACACCCTCTGTTCCGGACAGTCGCACAGATCCCTCGCTGGAGACCACCATAGAACCTACGGTGGAAGCCACGTCGCCCGACACTACTAGTGATACTACaacagACCAAAATACGCAATCAGATGACACGCCCATCATTGCGGTGATGGTGGCTCTGTCATCCCTGCTCGTCAtcgtcttcatcatcatcatcctctatATGCTCAGGTTTAAGAAGTACAAGCAGGCCGGCAGCCATTCCAACTCCTTCAGGCTGACCAACGGTAGATCAGATGATACAgAGCTCCAGAGTGTGCCGCTATTGGCCCGCTCGCCTAGCACCAACAGGAAGTACCCACCCCTTGTTGTTGACAAGCTGGAGGAGGATATGAATCGTCGCATGGCTGATGACAACAAGCTCTTCCGGGAGGAGTTCAATgCGCTGCCGGTGTGTCCCATCCAGGCGTCATGCGACGCAGCCTCTAAGGAGGAGAACAAGGAGAAGAACCGATACGTCAACATCCTGCCATatgaCCACTCCAGGGTGCATCTGTTGTCTCTAGAGGGAGTTCCAGACTCTGACTTCATCAATGCGTCCTTCATCAACGGTTACCAAGAGAAGAACAAGTTCATTGCAGCTCAAGGGCCAAAGGAGGAGACGGTAAACGACTTCTGGAGAATGATCTGGGAACAGAACACCGCCACCATCGTCATGGTGACCAACctgaaggagagaaaagagAAATCCATACAGCGgcaatctctctgtgtgtctcagtgtAAGTGTGCCCAGTACTGGCCTGACCAGGGCTGCTGGACCTACGGCAACATCCGGGTCTCTGTGGAAGACATGATGGTGCTGGTGGACTACACCATCCGCAAGTTCTGCATCCAACAGgTAGGGGATGTGGGGGGTAAGAAGCCCCAGCGGCTGGTGACCCAGTTCCACTTCACCAGCTGGCCAGACTTTGGCGTTCCCTTCACACCCATCGGCATGCTTAAGTTCCTCAAGAAGGTCAAGACCTGCAACCCCCAGTACTCCGGCCCCATCGTGGTCCACtgcagTGCGGGGGTGGGGAGGACAGGTACCTTCATAGTGATAGACGCCATGTTGGATATGATGAACACCGAGAGGAAGGTGGACGTCTTTGGCTTCGTCACTCGCATCAGAGCCCAGCGCTGCCAAATGGTCCAGACCGACATGCAATACGTGTTCATCTTCCAGGCCATGCTGGAGCACTACCTGTACGGAGACACAGAGCTGGAGGTGACCTCCCTGGAGTCCCACCTGGCCAAGCTCTACGCCCCCTCCGCCGCCGGCTGTGGGGGCATGGAAGCAGAGTTCAAGAAGCTGACCTCCATCAAGATCCAGAACGACAAGATGAGGACGGGCAACCTGCCGGCAAACATGAAGAAGAACCGAGTTCTCCAGATCATCCCATACGAGTTCAACAGAGTGATCAATCCAGtcaagagaggggaggagagcacGGATTATGTCAACGCTTCCTTCATTGATGGCTACCGTCAGAAGGACTCGTACATGGCCAGTCAGGGCCCCCTGCAGCACACCATCGAAGACTTCTGGAGGAtgatctgggagtggaggagctGCTCCATAGTCATGCTCActgagctggaggagagaggacagGAAAAGTGTGCTCAGTATTGGCCCAGTGATGGGGTGATGGTGTGTGGTGACCTCTCCATCGAgctgaagagggaggaggagagtgagagctACACTGTTAGAGACCTTCTAGTCACCAACAACCGGGAGAACAAGGCTCGTGCGGTGAGGCAGTTCCATTTTCATGGCTGGCCGGAGGTGGGCATCCCCAGCGACGGAAAGGGGATGATCAACATCATCGCCGCGGTCCAGAAGCAGCAGCAACAATCTGGCAACCACCCCATCACTGTCCACTGCAGtgcgGGCGCGGGGCGGACGGGGACCTTCTGTGCCCTGAGCACGGTCCTGGAGCGGGTGAAGGCTGAGGCCATCCTGGATGTCTTTCAGACTGTCAAGAGCCTCCGGCTGCAGAGGCCCCACATGGTGCAGACACTGGAGCAGTACGAGTTCTGCTACAAAGTGGTCCAGGAGTATATCGATGCCTTTTCTGACTACGCCAACTTCAAGTAGGGACCCACACGGGACGGACATCCGTACACAGTCATAAACACACACCAAACCCACACGTACCCGACGGAAAGAAACAAACTGGGCAGCCTGCGTGCACAGAGGAAAAGGGAATTGAAGTTTTGTGACGGATCCAAGTGCAGCGCTGCAGTGTACCGGAGGGAGTGAATATCAGAGATGCCTTCTTGAATATTTTGTCATATTGAGCTTGTTAATACGGGCCCCTTGTCCCTGTTCCCCCCACATCGACACTCCCCAATCCACCCAATGTACATATACTGTACTTTACCCTGTCACATTTGGGGGTTTTGTTTTTAGGTTAAGTTTAAGTTTGGCTGCATTTTTAGGGTGACATAATGTGTTTtatgggtatgtgtgtgtacatagaccgtgccagtcaaaggtttggacacatttactcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1666814 lncRNA upstream 16323 47727795 ~ 47728035 (+) True G1456920
TU1666775 lncRNA upstream 29611 47713943 ~ 47714747 (+) True G1456883
TU1666780 lncRNA upstream 34592 47707696 ~ 47709766 (+) True G1456888
TU1666781 lncRNA upstream 38433 47704632 ~ 47705925 (+) True G1456889
TU1666810 lncRNA upstream 42784 47701339 ~ 47701574 (+) True G1456916
TU1666953 lncRNA downstream 186921 47976934 ~ 47977139 (+) True G1457051
TU1666995 lncRNA downstream 286353 48076366 ~ 48076682 (+) True G1457091
TU1666998 lncRNA downstream 297592 48087605 ~ 48087822 (+) True G1457093
TU1667050 lncRNA downstream 410028 48200041 ~ 48200356 (+) True G1457137
TU1667066 lncRNA downstream 475951 48265964 ~ 48266185 (+) True G1457153
XM_021568640.2 mRNA upstream 776 47728424 ~ 47743582 (+) False idh3b
XM_036949991.1 mRNA upstream 776 47728424 ~ 47743582 (+) True idh3b
XM_021568639.2 mRNA upstream 1769 47728424 ~ 47742589 (+) False idh3b
XM_021568635.2 mRNA upstream 367658 47374636 ~ 47376700 (+) True LOC110493989
XM_021568634.2 mRNA upstream 371777 47365071 ~ 47372581 (+) False otop1
NM_001124245.1 mRNA downstream 15499 47805512 ~ 47807518 (+) False LOC100135862
NM_001124008.1 mRNA downstream 24878 47814891 ~ 47818587 (+) True LOC100136222
XR_005036992.1 mRNA downstream 38702 47828715 ~ 47833280 (+) True LOC118940470
XM_021568647.2 mRNA downstream 148933 47938946 ~ 47971144 (+) True LOC110493995
XM_021568648.2 mRNA downstream 190968 47980981 ~ 47985604 (+) False LOC110493996
TU1666430 other upstream 515562 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 1885857 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 2407835 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 2484787 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 2673433 45069971 ~ 45070925 (+) True G1453914
TU1666845 other downstream 15345 47805358 ~ 47807481 (+) True LOC100135862
TU1666865 other downstream 43567 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 240901 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 599069 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 903308 48693321 ~ 48721244 (+) False bsnb

Expression Profile