RNA id: NM_001124245.1



Basic Information


Item Value
RNA id NM_001124245.1
length 543
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC100135862
representative False

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47805358 ~ 47807518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCGAACTAAGGGTCTAAGATCCAGTGATGGTGAGTGTGGCTAGACTGGTGTTTATGCTGGGGCTGCTGCTGTGTCTGGGAGCCCAGCTGTCTTCCTCCCAGCACTGGTCCCATGGCTGGTACCCTGGAGGCAAGAGGGAGCTGGACTCATTTACCACCTCTGAGattTCAGAGGAGATTAAACTCTGTGAGGCAGGAGAATGCAGCTACCTGAGACCCCAGCGAAGGAACATCCTTAAAAACGTTATTTTGGATGCCCTGGCCAGAGAATTTCAGAAGCGAAAATAACCTTAGACAACCTATCAACCGTGGCTGATTTAAATCcttccttgtctctgtctgtttccttcaTGACCTCTATTCTAATCTCATGTGATTTGGTCCAATTTTGTGGTTCATCCACTTTGATAATCATATAGCATCACTCTTTACCATTGCATTCTCCTTCTGTCCCCTTTTTGCTGCTGTAGACTATCAATTACAGATGCAACATCGTGCACATGCCATTTCCTTTAATAAAGTATCTATTTTGTTATTAATGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1666814 lncRNA upstream 77477 47727795 ~ 47728035 (+) True G1456920
TU1666775 lncRNA upstream 90765 47713943 ~ 47714747 (+) True G1456883
TU1666780 lncRNA upstream 95746 47707696 ~ 47709766 (+) True G1456888
TU1666781 lncRNA upstream 99587 47704632 ~ 47705925 (+) True G1456889
TU1666810 lncRNA upstream 103938 47701339 ~ 47701574 (+) True G1456916
TU1666953 lncRNA downstream 169416 47976934 ~ 47977139 (+) True G1457051
TU1666995 lncRNA downstream 268848 48076366 ~ 48076682 (+) True G1457091
TU1666998 lncRNA downstream 280087 48087605 ~ 48087822 (+) True G1457093
TU1667050 lncRNA downstream 392523 48200041 ~ 48200356 (+) True G1457137
TU1667066 lncRNA downstream 458446 48265964 ~ 48266185 (+) True G1457153
XM_021568643.2 mRNA upstream 15499 47744356 ~ 47790013 (+) False LOC110493993
XM_021568644.2 mRNA upstream 15499 47744358 ~ 47790013 (+) False LOC110493993
XM_021568641.2 mRNA upstream 15499 47744360 ~ 47790013 (+) False LOC110493993
XM_021568645.2 mRNA upstream 15499 47744360 ~ 47790013 (+) False LOC110493993
XM_021568642.2 mRNA upstream 15499 47760598 ~ 47790013 (+) False LOC110493993
NM_001124008.1 mRNA downstream 7373 47814891 ~ 47818587 (+) True LOC100136222
XR_005036992.1 mRNA downstream 21197 47828715 ~ 47833280 (+) True LOC118940470
XM_021568647.2 mRNA downstream 131428 47938946 ~ 47971144 (+) True LOC110493995
XM_021568648.2 mRNA downstream 173463 47980981 ~ 47985604 (+) False LOC110493996
XM_036949993.1 mRNA downstream 173463 47980981 ~ 47985604 (+) True LOC110493996
TU1666430 other upstream 576716 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 1947011 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 2468989 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 2545941 45258475 ~ 45259571 (+) True G1454049
TU1663604 other upstream 2734587 45069971 ~ 45070925 (+) True G1453914
TU1666865 other downstream 26062 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 223396 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 581564 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 885803 48693321 ~ 48721244 (+) False bsnb
TU1668190 other downstream 1115289 48922807 ~ 48928262 (+) False erc2

Expression Profile