RNA id: NM_001124008.1



Basic Information


Item Value
RNA id NM_001124008.1
length 1157
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC100136222
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47814891 ~ 47818587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GACACGCATCATAAACACACGACCACTCAAGATGACCCCGTTGGCACTGGTATGGACAACGGTGTGCTTGTGGAAAACAGTGTACAGCCTGACACCAACCGAGTCCCACTTTGTCCAGTATCCCCCAATCAACAACACAGAGGTCGTCAGCTGTGAGTGTTCCAGCCGCTCCTGCCAGACAGTCTTTTGGTTCCGCACACACCACAACAACTCCGGCTTCCAGTTCCTTCTCAGCCTCAACAATGCTGAGCGGGCCATCTTCGGACCCGGGGTGGATGAACACGGGTTCAAGGCCAGTAAAAGGGACATGGGGAGCAAGGTGGTTTTCACACTGCGCATCATTAAAATAAAGGCAGAGGACGCAGGGTTGTACTCCTGTATGCTCCAGAACCAGAAAGAGAACGAGTTGTGGAGGCCAGGAGTTCTTCTCAGACCCGGAGAAACTCGCCCAACATTAACCCCTGTCACGAAGCCCAAGCCCAAGCCCCCAGGAATCCCAACCGGCCGTTGCACCAAAAGGAACTATCAAACCCCAGAAGGCTGTGGCTACAAAGTTCTGTGGCCGTTGGTCGGAGTACTCCTCACCCTGGCTGTGGCTTTGATCTACACACTGTACTACTTCAGCCGACTACCCAAAAAGTGTCGACATCAGTTTGCCAAGAAAAGACCAATGAAGTAAGACAGAGAGCCCGCACTGCAGACTCTGAGACAGTGCTGTATGTGTCCTTAGCTCTCCTTCTAGGAATCCAATTCGACTGAATCTGAACACAGTTTTATTAGCATGTCACTTTTCTATTCTTTGTTCATTGCAGCAATGAACTTACCTGAAAATGCAACTGTCTAAAATGAAACTCTTAGGATGCTGTCCACAATGTTACTGCCTCTGGCTCTGGTTTTCTAATTAAGTGGATGTATTTAACAGAAGACATTTTTTATGAACTGGTATTACTCTCATGTGCTAGTATACCACAAATGCAgcttttaataaataaataaaatacattactTGTAAATAGGTGCATACTGTATATCTATTGTTTTGTGTTTGCCATGCATTGCCCATCTGGAAGAACAATACCATGGTTTGCCTATTGATATTTGGCAAAACTGTACTTTCAATTGAGTCAAAGCAATACGAAGCATTGTATTCTGGTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1666814 lncRNA upstream 86856 47727795 ~ 47728035 (+) True G1456920
TU1666775 lncRNA upstream 100144 47713943 ~ 47714747 (+) True G1456883
TU1666780 lncRNA upstream 105125 47707696 ~ 47709766 (+) True G1456888
TU1666781 lncRNA upstream 108966 47704632 ~ 47705925 (+) True G1456889
TU1666810 lncRNA upstream 113317 47701339 ~ 47701574 (+) True G1456916
TU1666953 lncRNA downstream 158347 47976934 ~ 47977139 (+) True G1457051
TU1666995 lncRNA downstream 257779 48076366 ~ 48076682 (+) True G1457091
TU1666998 lncRNA downstream 269018 48087605 ~ 48087822 (+) True G1457093
TU1667050 lncRNA downstream 381454 48200041 ~ 48200356 (+) True G1457137
TU1667066 lncRNA downstream 447377 48265964 ~ 48266185 (+) True G1457153
NM_001124245.1 mRNA upstream 7373 47805512 ~ 47807518 (+) False LOC100135862
XM_021568644.2 mRNA upstream 24878 47744358 ~ 47790013 (+) False LOC110493993
XR_005036992.1 mRNA downstream 10128 47828715 ~ 47833280 (+) True LOC118940470
XM_021568647.2 mRNA downstream 120359 47938946 ~ 47971144 (+) True LOC110493995
XM_021568648.2 mRNA downstream 162394 47980981 ~ 47985604 (+) False LOC110493996
XM_036949993.1 mRNA downstream 162394 47980981 ~ 47985604 (+) True LOC110493996
XM_036949995.1 mRNA downstream 182683 48001270 ~ 48026662 (+) False LOC110493997
TU1666845 other upstream 7410 47805358 ~ 47807481 (+) True LOC100135862
TU1666430 other upstream 586095 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 1956390 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 2478368 45335294 ~ 45336523 (+) True G1454127
TU1663743 other upstream 2555320 45258475 ~ 45259571 (+) True G1454049
TU1666865 other downstream 14993 47833580 ~ 47839370 (+) True G1456969
TU1666965 other downstream 212327 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 570495 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 874734 48693321 ~ 48721244 (+) False bsnb
TU1668190 other downstream 1104220 48922807 ~ 48928262 (+) False erc2

Expression Profile