RNA id: XM_021568648.2


Basic Information

Item Value
RNA id XM_021568648.2
length 1510
RNA type mRNA
GC content 0.58
exon number 3
gene id LOC110493996
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47980981 ~ 47985604 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGAAAGagtgaaaagagagggggagaaaagaaagagaggaggaaagacaaGGGAGTGGGATATGAGAGAGGAAAACACAACGGAGAAAGACGACTGAGAAAGACAATATTGATATCTTAAAAAGTGCTAGACGtagagaaagagatatatatatatatagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagcgagacagaataGGAGTATCCTGGCAGCTATCCAGGCCTCAGCCCAAAGCCAGGTCCTGCTGCCGCTTCTTGTCTGTCCAGAACATGGTGCTGTTCCCACTCTGCAAACTGCTCTCAGGGTCAGTCAGAGTGACCAAGAAGCAGCTGGTCCTGTACTGTCTGCTCCTATCTCTGCTCGTATACTTTTTCAGATGGAGGAGAGCAGTGCTCAAGGTGGACACGcaccctcttcctctttctctggaGGCGGAATCAGTAAGTGTGGTCAGAGACATAGTGGTGGGCAGTGTGGAGGAACAGCAACAGCGCCTCCCGCTGGAGACATCCTGGGGCGCTCCTCTGGTGTGGGGCGACTCTGACGGCTCAGCGTGGCGGAGGGCCGAGTTTGCCCACCGCAGCGTCCGCACAGGCCTGCTGACGCTCGCCGTGGGGCCCTACGGCCACTTCCTACGCCGCTTCCTCTCCTCGGCCGAGCTCTACTTCCTGCCCGGTAACACCGTGGTCTACTACGTCCTTACGGACAGCCCTCGCGCCCTGGATCCCCCGACCCCGCTGGGCCCTGGCAGAGAGCTGAGGGTGGTCCCGGTGGCAGAGATGCCCGGCTGGGAGCGTCTGGCCCAGGGCCGCATGGCCCTGCTGGCGGCCGCCATTAAAGAGCCAGTTAGGCACGAGGTGGAGTACATCTTCTGCATGGACGTGGACCAGGAGCTGGTGGCCCCGGTGGGAACTGAGATCCTGGGGGAGCTGGTGGCTGCGCTGCACCCGGAGCTCTACGGCATGCCCCGCCACACCTTCCCGTACGAGCATGAGCCCGCCTCGCTGGCCCACGTGGAGGAGGACGAGGGCGACTACTACTACACGTCGGAGCTGTACGGGGGTCTGTGCGCTGATGTGTACGCCATGGCCCAGGCCTGCTCCCAGCTCATCCTCCAGGACCAGGAAAAGGGGCTGTGGGCTCGTGGACTGGAGGAGAGCTACCTCAACCGCTACCTGATCAACCGCAGGCCCACCTGTGTCCTCTCGCCCGAGTACAGCTGGTGGGACTCAGCCCTGGCCGCCGACGTGCCCACAAGAAGGGTGGTGTCCCTGGGGAGGCAGTGTGACTCCCTGGAGCCACAAAAGAGACAGGAGCAGGACTGCTGAGAGGGTTATTTCTTTGCTTTGTCATAGAATTAGAACAACCATAAAATGTAGACAAATTCAAAAAGCAATTTTAAGGCAAACACAAGGATCCCTAGGAATCTGTTGATGTGTCAGTAAATAAACTAATGGCAGCAGACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1666953 lncRNA upstream 3842 47976934 ~ 47977139 (+) True G1457051
TU1666814 lncRNA upstream 252946 47727795 ~ 47728035 (+) True G1456920
TU1666775 lncRNA upstream 266234 47713943 ~ 47714747 (+) True G1456883
TU1666780 lncRNA upstream 271215 47707696 ~ 47709766 (+) True G1456888
TU1666781 lncRNA upstream 275056 47704632 ~ 47705925 (+) True G1456889
TU1666995 lncRNA downstream 90762 48076366 ~ 48076682 (+) True G1457091
TU1666998 lncRNA downstream 102001 48087605 ~ 48087822 (+) True G1457093
TU1667050 lncRNA downstream 214437 48200041 ~ 48200356 (+) True G1457137
TU1667066 lncRNA downstream 280360 48265964 ~ 48266185 (+) True G1457153
TU1667067 lncRNA downstream 280942 48266546 ~ 48266927 (+) True G1457154
XM_021568647.2 mRNA upstream 9837 47938946 ~ 47971144 (+) True LOC110493995
XR_005036992.1 mRNA upstream 147701 47828715 ~ 47833280 (+) True LOC118940470
NM_001124008.1 mRNA upstream 162394 47814891 ~ 47818587 (+) True LOC100136222
NM_001124245.1 mRNA upstream 173463 47805512 ~ 47807518 (+) False LOC100135862
XM_021568642.2 mRNA upstream 190968 47760598 ~ 47790013 (+) False LOC110493993
XM_036949995.1 mRNA downstream 15666 48001270 ~ 48026662 (+) False LOC110493997
XM_036949994.1 mRNA downstream 15670 48001274 ~ 48026662 (+) True LOC110493997
XM_021568651.2 mRNA downstream 45288 48030892 ~ 48036585 (+) False glrx
XM_036949996.1 mRNA downstream 117933 48103537 ~ 48147244 (+) False ubap1
XM_021568661.2 mRNA downstream 121968 48107572 ~ 48147244 (+) False ubap1
TU1666865 other upstream 141611 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 173500 47805358 ~ 47807481 (+) True LOC100135862
TU1666430 other upstream 752185 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 2122480 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 2644458 45335294 ~ 45336523 (+) True G1454127
TU1666965 other downstream 45310 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 403478 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 707717 48693321 ~ 48721244 (+) False bsnb
TU1668190 other downstream 937203 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 942743 48928347 ~ 48938022 (+) False erc2

Expression Profile