RNA id: XM_036949995.1


Basic Information

Item Value
RNA id XM_036949995.1
length 4909
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110493997
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48001270 ~ 48026662 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTAGAGCTGCTATATGCTCGGACGTCAGAGGGACGATGGTGGAGGGCTGGTAAAGATGGCGGCGCTCTCCGAGGATGGGAGGTATGGACTGAATTGTGGCCGACGGAATGCAGATCGAGTCACCGTATTGCACGTAAAATTGACAGAGACAGCTTTCAGAGCAATAGAGAGCCACCAAACCTGTAAGAATGTACCGTCCTCGCGGCCAACAATACAATTCAAGGGACTCCAAGGGCGCATTAAGATCCCAAGGACTGACTCTCTGGATGGCTCTCAGAACTTTGACTTCTATCTGTCCAACGTGGGCAAGGACAACCCTCAGGGAAGCTTTGAGTGCATCCAACAATATGTGTCCAGCTCAGGGACCCCGCACCTGGTGTCCTTGGGGACGGTTCAGGACAAAGTCACGGTGTGTGCCACCAACGACTCCTACCAGGTGACCCGGGAGCGCATGGCGCAGGCCGAGGAGGACAGTCGCAAACGGGGGACCAAGGTCCTCAAGCCTGTGGGCCAGTTCAGAGGTAAGAAAGTCCAGATCCGCAAGCCAGCGCCGTCAGGCTCCGAACCAGTTGCGGAGCGCAAACGCTCCACCCCCATCAACCCAGCCAACACCATCCGCAAGTGCCTTGCCAACAACCCGGTGTCCCAGCGGCCCTACCGCGACCGCCTCGTCCACCTGCTGGCTCTGCGCTCTTACAAGAAGCTGGAGCTACTGGCCAGGTTGCAACGGGACGGGGTCAGCCAGAAGGACCGCAGCTCTCTGGGGAGCACCCTGCAACAAGTGGCCAACCTGAACCCCAAAGATAACTCTTACTCTCTGAAGGACTTTGTGTACCGCGATGTGCAGAGGGACTGGCCGGGCTACTCCGAGGATGACCGCGTTCAGGTCAACGGGATCTTGGTTCGgAAACTGGGCCTTCCCACTGAGACACTTTCCTCCAGCAGTCCTCTTAAAGACGGCCTCCCGGCTTCCCCACAGAAGTGCCAGCCCGAGTTGCCGGTTCACTTCACCGACCCCCTGATGCCGAAGAAGCCCCGCATCTCCCATGTCACCAGCCAAGGGCCCCCTGCCGCCCCAACCCCCATCCCCACCTCGTCCTCTAGAGAGCGCCGCGCCCCCCCGAAGGAGGACGACAGCCACCACAGCGCTGCTGCCACCACTAACACAAAGCGCTCGTCTCTCCCAGCCAGTACCACCACCACTGCTGGCCCGCCCCTCAACCACCAAcaccttccccctccctcccagctCCAGGTTTCTCAACGCCCTCCCCCGTCGCATCAGTCTGGCCCGGGCTCCAACTCCAACTCGCCCAGCACGCCCGAGGGCCGTGGCACCCAGGACCTGCCCCTGGACCAGAGCTCCACCTGCCTGGAACCCCCCTCACCGATAGCCACCTCCAGCCCCCCGAGCAGGACCACTGACCGTTATGGCCCCTGCATGCCGCCACCAGCCAGCTCCAGTCCCCAAAGCCACCCAGCCCTCACCAtctcttcttcatcctcctcatcctctaccATTATCCCCCCTCCCTCGCCAAGCAGTAGCAAGAAGTCCAAGAAAAAGTCAAAGAAGCACAAAGAGAAGGACCGCGAGAAGGAGAGGCGCAAGGATGTGCGAAGCAGTAAAGGCGATGGCCCTGGTGTCAGCCCCCGAGGGGTGCCGGTTGTGGACGCTCAGAGGCCCAGGAAGAGACACCGCACCAAGGCGGAGGAGAAACAAACGCCAGTCATCCCCGCCAAGAGCCCAGTCTGCCTGGACGAAGACACTAAAGAGAGGCCAGTCCACTCGTCAGACCTATCCTCCACCACTGTGATGCCAGATTACATAAGTAAGTACACGGCAGTGGTGTCTATGGACCAGAGGCAGAGCTACAAGGACGAATTCAATGCCGAGTATGAGGAGTACCGCGTCCTGCATACCCGTGTGGAGAACATCACCCGCCGCTTCCACCATCTAGACAACGAGTCCAGGAGGCTGCCTCCCGGCACCAAAGAGTACCAGGAAGTACATGAAGAAGTGTTGCAGGAGTACAATAAAATGAGACAACACAGCCCAAACTACCAGGTGGAGAAGCAGCGCTGCGAGTACCTGCACAACAAGCTGGCCCACATCAAGCGCCTCATCGCTGACTTTGACCAGCGCAGGGCCCAGTCCTGGCGCTAGAGCACCAGCTTCAAGACCACAGTGTTGAGGTGGTTTAAGGGGTGGGCAGAGCAAGGGGAGTCCAACTGGcttttatttattcagacccctctGCCACCGCTTCCTTCCTTTACCCTTTCTACCTTTTGATTCCACAGGCTGCAGGAGGCTACAGTACACCATCTTAAAATTCTTattcactgccccccccccccctacctttTCTCGTATTGGTTTCTCCTGGACCTCCTCTCTCTTACTACAACACTGGTCTAGAGGAAGGGAGTGGTAGTGAGGGGGTGGTAGGGCAAAAATACTTAACGCTTCTTACCTTTTGAAGGACTTATCCCTAAAAATGAACAACAAAAATTAAACTTATTTTTGAAAGCAGAGAAAATATTATACTTACACTTGTATTTAAGTAAATAAAGAGGGAGATCTATTTATTTTGGACTGTTATGATGGAGGAGCGGTCCACAGATGATTTATTGTTTAAAAAGTTTATATTTTCCAAAAgcaatgcaaaaaaacatggGCCTTATGTGTTTGACTTTATGAAGCCATTTTGCACGTGAGAGGAGATCCCATGCTGCATCCCAGTGGTCCAAAGTGGCTCATCTTCATTGTAAAGTAGGGGGCTCAAGGAAAGGAATCCACTTGAGCAATTGAGATGTAACaccaatgtgtgtgtgcatgggttaTAAATGGCTTATAATGGGGGTGGGATGGGTAAATTAGGAGTATCCGTCCCCTGACAGCAGGGGCGTGCTACCCTGAGCACCACCAGTGTTTCTGCCCTCAGTGCAAAAGGGTGCCTTAACGTGTTTAGTTTACACTGCAATGTCGAGTCGCTGAGACTTCTAGGGTCCCCGAGACACAGTAAAGAATATGTCTGAGGTTAGGTGGTACCTTTTTGAGAGGTGAGGGAGTATCAAGAGGGGCTACAAAGGTCAGGGTggtttgtgtgtgcgtgagtgtgacCTGTGTATGGGTGGGCGCCAATGTTAAACGGGGGGGGGGATTAACGGGTTGGGGCGAAAACACAAGTGGGGaaagaaaaaagtaaaaaaaagcTGCTTTAGTCTTTGTTTGAAGAGCCAGAGCCCTCAGGATCAACCTGGCTAAAGTTACATGTTCTTAATTGGGAGGCTGTTCTAGAGTAGCAAATCTCTAGGACTACAGCGTTGCCTCGCCAGCTTATTTAAAGGAAAACAGGCTGTGTTCTGTTTGacgaggaaaaaaaaaaaaaaagaatgcatCCACCTGAAGACAAATCTGTATTACGatgaaaaatgtattattttcttCTCGATTCCAGTTTTGGCAGTGCAGCAGAACTATGGAAGAACGACGATTTAGCGTTTCTGTTTTAGGTTTTTGAATTAAACTCATGCTGATTTAGTTTGATGGATGGGTTATGAAAATCAACTTTTGAGTCTTTATTTCATGATCTCGTTAATTAACAAGCTCCTTTGAGCTCAAGGGAAACATTATGTTTACAAACCTGTGTTAGAATGTTTGCCCAAAAATGTGCTGTTCTGGTATTCCAGTGGGGCATCTACCTACCAGTTGTCACACTGATACCAGAGACAGGATATGAAATGTATTCCCTGGAAAattgcttctttttttttgttcttttttggggggtggaGATATTCTAATACTTCTTCATTTGAACTTTTTTTCTGTttcaggggggtggggggtataaaaaaaatataattatatataattgtaAGAAGCTGAAGATGCAAACTTGCTGCAGTATGGTGTAATGTAAGtctgtgatagagctcatatcaACTGTCGTGAAATGATTGGGGCTTCCTTTGAATGGGCCAGTCTCTGCAGCAGACCGACTCTTTCCAGAGGTAGTGTCACTTTTTAAAACAGGAGCTTGGCTCTCTCCAGTCACAAAAGCCAACTATATTTCAGTGTTGCTGTATTTCAATTTAATAGTCAAACTCCTATCAGGACCATGAGCTCAACATGCTTAAGAGGGATTTGTAGACGTGAAAAATACTTATTTGCAGATCCTGAATAATTGTGACACTCGTGAGTCCCAAGAGGAGTACTGAAGTACAGGGTCCATTCCCAGGAAAGTGGGTACTTGGTCGGAGCCTCACTCAAATAACTTGTGTGATGGGctgcttttattttattttttcccctTTTCCCATAACTATTGCAGTCGTTTCCCAGAATTTGTGAGTCACCCAAGGTTGACCCAATAGCCAAAATGTACGCTAGGCTGCACACAACTCCCAAGGTCTAGTCTGtctcactgcccccccccctccctccttttttAAAGACAGCTCTGTAACATAGCTGCATTGCTGCTAAGCCCCACTCCCTTCCAGCCCCTCTGAAGCAGTAAGCCACTCTGCTAATCGCTAATCGTTCTCATACTGCGGCTCAGGGAGAGGCTGTCCTCGCCGCGACCCCGCAGGCTAATGCCCAGCTAAAGGAGCGTCCGCCAGGAGATGGGTCAGAGGACATTTAGCGGGGTCTTAACATGGCAGGCCGCTAAGTGACTCATCAGTACTGCGGGAAGCAAGGAGGAGGGCTGAGAGCGCAAAAGTAGAGGAGTTGTTTTTGTTATGTTGGGGGAGGAGGGGTCAAGTTTTAAGGAGAAAGggcaaacaagtgttaaacaccATTTCAAAACTGTATGAATTGTGAAGGAGTGGTAAACCTGCCCACCTGAAAATGCATTAAATCAGTACAATAAAAGCCAACTTGGTTCTACATTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1666953 lncRNA upstream 24131 47976934 ~ 47977139 (+) True G1457051
TU1666814 lncRNA upstream 273235 47727795 ~ 47728035 (+) True G1456920
TU1666775 lncRNA upstream 286523 47713943 ~ 47714747 (+) True G1456883
TU1666780 lncRNA upstream 291504 47707696 ~ 47709766 (+) True G1456888
TU1666781 lncRNA upstream 295345 47704632 ~ 47705925 (+) True G1456889
TU1666995 lncRNA downstream 49704 48076366 ~ 48076682 (+) True G1457091
TU1666998 lncRNA downstream 60943 48087605 ~ 48087822 (+) True G1457093
TU1667050 lncRNA downstream 173379 48200041 ~ 48200356 (+) True G1457137
TU1667066 lncRNA downstream 239302 48265964 ~ 48266185 (+) True G1457153
TU1667067 lncRNA downstream 239884 48266546 ~ 48266927 (+) True G1457154
XM_021568648.2 mRNA upstream 15666 47980981 ~ 47985604 (+) False LOC110493996
XM_036949993.1 mRNA upstream 15666 47980981 ~ 47985604 (+) True LOC110493996
XM_021568647.2 mRNA upstream 30126 47938946 ~ 47971144 (+) True LOC110493995
XR_005036992.1 mRNA upstream 167990 47828715 ~ 47833280 (+) True LOC118940470
NM_001124008.1 mRNA upstream 182683 47814891 ~ 47818587 (+) True LOC100136222
XM_021568651.2 mRNA downstream 4230 48030892 ~ 48036585 (+) False glrx
XM_036949996.1 mRNA downstream 76875 48103537 ~ 48147244 (+) False ubap1
XM_021568661.2 mRNA downstream 80910 48107572 ~ 48147244 (+) False ubap1
XM_021568662.2 mRNA downstream 80913 48107575 ~ 48137126 (+) True ubap1
XM_036949997.1 mRNA downstream 126320 48152982 ~ 48174562 (+) False dcaf12
TU1666865 other upstream 161900 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 193789 47805358 ~ 47807481 (+) True LOC100135862
TU1666430 other upstream 772474 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 2142769 45856249 ~ 45858501 (+) True G1454824
TU1663824 other upstream 2664747 45335294 ~ 45336523 (+) True G1454127
TU1666965 other downstream 4252 48030914 ~ 48036583 (+) True glrx
TU1667106 other downstream 362420 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 666659 48693321 ~ 48721244 (+) False bsnb
TU1668190 other downstream 896145 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 901685 48928347 ~ 48938022 (+) False erc2

Expression Profile