RNA id: TCONS_00046272


Basic Information

Item Value
RNA id TCONS_00046272
length 1667
RNA type transcribed_unprocessed_pseudogene
GC content 0.44
exon number 10
gene id XLOC_023397
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 20032331 ~ 20054257 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCTGGATCCTCCGACAGGCTCCAAACCTCACCGAGGAAAAGCAGCTGAACCTCACCGTCCCGCTGGACAGCAAAGGACAGTATGAGAGCTGTAGGATGTTCACACCTGTAGAGATGGATATTGAGGATATTGAACATTATGGAATAAACACAACTACATCTTGTATTGATGGATGGGTTTATAAGACACCgaaaagcagcagcagcacactTATAACTGAGTTTGACCTGGTGTGTGAAAATAAGGTTTATAGTGAGGCCTCTCAGTCCATCTACATGGCTGGTCTTCTTGTTGGAGCCCTATTGTTTGGTCCAATGGCAGACAAGTATGGCCGGCGGTTTGCCACACTGCTGTCCTTGCTCCTGCTGTTTTTGTCTGGAGTGGGAGTTGCATTTTCCCCTAACATCTATGTCTACATGGTCCTTCGTTTTGTTGTTGGCACCACAATATCTGGGATCTCTATCAACACATTTGTTCTGGGTACTGAGTGGTGTGGTTCAGCCAAACGGGCCCTTTTCACCATATTATCGCACTGCTTTATTGCCCTTGGTCAAATGTTGCTGTCTGGGGTGGCCTATGGGATTTGAAACTGGAGGGTTTTACAACTGGTTTTATCAGCGCCAGTTGGGCTTTTCTTTGTCTATTACTGGATTCTCCCTGAGTCTGCGAGATGGCTTCTGACTCAAGGCAAACTAGACAGTGCCAAGAAAGAGATCCTCAAAGCTGCCCGAATTAATGGCAGGAAGGTGTCTATAAATCTGCTTGACAAgATGGAAGCAGAGAACACAGCCAAATCAAGCACCATGATAGACCTGTTCCGAGTGGCTTACCTGAGAAAGAGAGCTCTCATCATGTGCTATATGTGGTTTGTGACATCACTAGTTTACTATGGTGTCAGCTTGAATGTGGGGAACTTCGGCCTGGACATTTACCTGACTCAACTCATCTTTGGCATGGCAGAGTTTCCTGCACGGCTGTCCTGCTTTCCTCTCATTCAGCGCTTTGGACGGAGAATTTGCCAGAGTGTCTTTCTGCTACTTGGAGGCACAGCCTGCCTGATTATTCCTGCTATTCCAGCGAAATATCCTATAATTGTGACTGTAACCGCAGTGTTTGGGAAGTTTTCAATTTCTGCGGCCTTCTCCATTGTATACGTGTACACCGCTGAGCTCTACCCAACAGTTGTGAGGCAGAATGGGGTGGGCCTGAACTCCATGTGTGCCCGTGTGGCTGGTATTCTGGCTCCTCTGATTGGCTTGTTGGACGTTTATCATCATGCCATTCCTATGATCATATACGGCTCGCTGCCTTTTGTTGGAGGAGCTCTGACCTTCCTGCTTCCAGAAACACTGAACACTGACCTGCAGGACCACACAGATATCCCTGCGGATGAGAGCATGGGATTAAATAAAGCCAGCATTGAAAAAGGACTGAATAAGGAGCAAGGACTGGTTCTCAAGAGCACAAAATTTTGAGATTTGTACTGCTGTTTGAAACAATAGCTGTTTATGAAATTGATAGATTTTATAAATAAGTAAACTTGGTTTATTTATCAGGTTTACTTTTCTTGCTGCATCATGTTTGTAaagttttagtaatttaaaataaatttgtacttttttatcTTTTCAATGAAAGAAAGTAAACATCTGTGATATATTTATG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000150840

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046271 lncRNA downstream 20299 20010582 ~ 20012032 (-) True XLOC_023396
TCONS_00046853 lncRNA downstream 69449 19958916 ~ 19962882 (-) False XLOC_023395
TCONS_00046854 lncRNA downstream 69449 19960872 ~ 19962882 (-) True XLOC_023395
TCONS_00046267 lncRNA downstream 323284 19708535 ~ 19709047 (-) False XLOC_023394
TCONS_00046254 lncRNA downstream 1463845 18560253 ~ 18568486 (-) False XLOC_023389
TCONS_00046275 lncRNA upstream 6434 20060691 ~ 20062056 (-) False XLOC_023398
TCONS_00046274 lncRNA upstream 6434 20060691 ~ 20063050 (-) True XLOC_023398
TCONS_00047174 lncRNA upstream 127740 20181997 ~ 20185025 (-) True XLOC_023400
TCONS_00047175 lncRNA upstream 395770 20450027 ~ 20501301 (-) False XLOC_023407
TCONS_00046288 lncRNA upstream 396358 20450615 ~ 20470991 (-) False XLOC_023407
TCONS_00046269 mRNA downstream 15514 20006711 ~ 20016817 (-) False XLOC_023396
TCONS_00046270 mRNA downstream 15514 20010052 ~ 20016817 (-) False XLOC_023396
TCONS_00046268 mRNA downstream 313091 19708869 ~ 19719240 (-) True XLOC_023394
TCONS_00046265 mRNA downstream 314254 19707609 ~ 19718077 (-) False XLOC_023394
TCONS_00046266 mRNA downstream 314254 19707612 ~ 19718077 (-) False XLOC_023394
TCONS_00046276 mRNA upstream 9831 20064088 ~ 20152965 (-) True XLOC_023399
TCONS_00046278 mRNA upstream 134657 20188914 ~ 20192996 (-) True XLOC_023402
TCONS_00046279 mRNA upstream 139765 20194022 ~ 20208474 (-) True XLOC_023403
TCONS_00046280 mRNA upstream 160161 20214418 ~ 20321012 (-) False XLOC_023404
TCONS_00046281 mRNA upstream 174983 20229240 ~ 20320480 (-) True XLOC_023404
TCONS_00046264 other downstream 743563 19288654 ~ 19288768 (-) True XLOC_023393
TCONS_00046263 other downstream 1112774 18910017 ~ 18919557 (-) True XLOC_023392
TCONS_00046256 other downstream 1406964 18625252 ~ 18625367 (-) True XLOC_023390
TCONS_00046255 other downstream 1433690 18560430 ~ 18598641 (-) True XLOC_023389
TCONS_00046245 other downstream 1546840 18470166 ~ 18485491 (-) False XLOC_023387
TCONS_00046277 other upstream 133059 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046286 other upstream 395770 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other upstream 416697 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046297 other upstream 593218 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046316 other upstream 1085065 21139322 ~ 21144300 (-) True XLOC_023418

Expression Profile

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