RNA id: XM_036949996.1


Basic Information

Item Value
RNA id XM_036949996.1
length 4114
RNA type mRNA
GC content 0.49
exon number 7
gene id ubap1
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48103537 ~ 48147244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACCCTGACTGGATCTACATCCCAACTCTAAATGGCTGCGAGGAAGTCTGATACCCACAACAATGGACCCATTAGCTACCTTGATGACGTTCCCTTCAAAATCAACGATAAGTTCCGCTGCCCTGCCAAAGTGGGGCTTCCCGTTGGCATCTCCCTGCCTGACTGTGACACTCTGCTCGCCAATCTGCAGTATGATTTCTCCCTGGAGAGGCGGAGCGTGCGCTGGGGGGCGGAGCTGGCTGAGGCCCGGGCTGCAGAGGTGGCCAGGGCGGAGCTAGAGAGCAGGGAGCACTCGCCCCCTGCCCAGGACCCTGACGGGGGATCGGCCTGCGGGGGGAAGAGACCATGCCCTGCCGAGGAGCAGGACGCTCTCCCGCCCGCAATGAACCCGCTGATGGCCAGCTTGCGCCACAATGCTATTCTCACCCCTCTGCCTGCACCAGCCAGGCAGACCGCTCCCAGCATCCCGACCCCACAGTACCTTAACCTGGCTGACTTTGAGCGCGAGGAGGACCCCTTCGACAAGCTGGAGCTCAAGACACTGGACGATAGGGAGGAGCTGCGCAACATCCTCCAGAGCCAGCCCCAGCCACAGACTCCATCCCCGCCTGAGGCACCCCAACTCAGGCCAGCATCTCGAGGCAGCACCCCTCCACCCCAGCTCCCCGCCACCAGCCTTCCAGCCAAAACGGTCTTTGCCCACAAAGCCAACGGGCTTGTGGTGCTACAGGACATGGACAGGGCCGGGGATCTGGCTCGGGGACAGACAATGGACCCTGACCGGCCCTGCAACATCCGCTCGCTGACCTTCCCCAAGCTGTCAGACCCCGGGGACTCAACCTTTGACTCCTACTGTCTGGCCCCTGTACCACGTAGCCTACCCAACGGCAGCCCGCCGGCACCCCAGCAGAAGAGAGAGGAGCCACCCAGTCATACCCAACAAACCCAAAATGGGGCACCAAAGCAGaTAAATGCAGGTCCTCCCCCTCTCCCGTGCAGCGGGGCACTGCTCAGCCTGTCCCCCAGTGAACGGCAATGTGTGGAGACCATAGTGTCCATGGGCTACTCTTACGAAGGGGTCCTGCGGGCCATGCAGAGGCGAGGCCAGAACGTGGAGCAGGTGCTGGAGTACCTGTTTACTCACGCGCGTCTTTGTGAGCGGGGATTTGATCCTAGTGCCATAGAGGAGTGCTTAGATATGTTCCAGAACTCTGAAGAGAAGGCCTTGGAGTTCCTATCGCTGATGACGCGGTTCTGTGAGATGGGCTTTGAGAAGGACACCATCAAGGAGGTGCTGCTGCTGCACAACAACGACCAGGACAAGGCTCTGGAGGACCTCATGTCCCATGCCTCAGCCAGTTGAGCCCCCCAACCGTCCACCCTCCAGCCCCAGGCTTGCTTCCTCCCAGTACCACCCGCCCCTCCAcccctaaacacacacagtccCCATGCCCCAACCTAGTTACAGCACAGAGGGGAGAACTCCCACCCCACCCAATGTAGCTATGACGTCCGTTCATGACCCCACTCTGGCCCACTCACACACAGTGACTCCAAAAGAGAGACTCCAAGAAATATAGTGAACACATACACTTCCATAAGTGAGAAATAAGACCTTGTGTTCCTAGAGTGTGGggcagtgggcaaatgtacacaAATGAACACCTGCGAATTGAGGGGGTTAGTTTATGCTGACCACATGCCCGTTTTACCTTGTCTGTcgatcactgtgtgtgtgtgcgccatggTGGTTTGAAGGAGGCTTGAACTTCCCATAAGAGCATATAGAGGTGACCCGATGCTGGACAGCACTTTGGTGGTGTGCAGTGACTCTGTGGGTGGGACATGGGGGGGACAAAGGACCAATGGACCCAGAACTGTGAGGAACCACTAGCCAGGCTCTACTTTCTACAGATTAACAGTGAACACTGACACTCCCAGCTAACTAAGCTGCCATCATCTGCTATTTAGAGCAGGCCTACAAaatggtggaggggaggggatgcCAAGCGGCCCATGTGTGACTTACTGACCGACCGGCGGCAGAACCTAAAAACGCAAATAAATGCGCATCATTgcagaacagagaactgactCCAAGAAGTGCCCTATTCCTGCAACTGGCTTTCACAGATCCCATATTTTCTATGCTGTTACTTTGCTTGTTCATTTGTCTCTGTTAGAAAGGACAcacattcattttatttttttcttggtgtcctttttttttgttgagatTCTCTTTCTTTGCTTTCTGTTTTAGGAAGTGCATTAACAGTAGTTAACTGTTCCTACTGCCTCCTGCACTGGAACAGACTGCAAGGCCAGTGGAGAAGAGATTGTCAATTATTTTGCAGGAAATATAAAACATGTCCAAATGCATACAAGCACCCAATGGCACAGAGATGTGACAaactgcacagacacacacactaacattagATATTGACTTATTTAAAAAGTACAGTGATATTTATTAATAATGAGATCAATATGAAGAAAAAATTATAAGCAAGCAAAATTATGGTGCTTTGAAACAGTCCCTATTGGGGTCGGTAGACTGgacagagagacgagagaaaTTGAAATGCTAGTTTTAGGTTGTTCTGCAACCAAAACTTTTGTGCAATAGATGTTTTATGGGACAGATGGGCACCTTTTTCAGACCCAGTGGACTTTTGGCATCCCTGAGCAATGGGCAAATCCCAAAATGACGGATGGCCTTTGCTGGAGACACGCTCACTGGAGGAGGAAATTGGTAGAAGAAAATATTTGATTTTGTTGTTTGCGGTCATTACTCCCCTCATTTATTGGAGTTCGTGTTTCACTATCAACTATGAGTAGTGTTTGTCTGACTCGTCACACATTCATGCTGGTCTGAATGTGTTTTGCCTCCCCCATGTGTCATGCATAGGAATCTTCCAAGAACAGGTCAGAAGATTAAACATCTTACCAGTTAGATATGAACCAAATTCATTATGGTGATATTTTATGTTCTAATTGTACTTCATTGTAGCTATGTTTTCACCTTGCATCGACCCTTTTGACTACTGATCTGTGTGTATGAGTCTACAGGTATTTTTGAAGTGCCATGATGATGCTCTCCATTTCATGTGTGAATCTTGCACCGAAAAGTATCTCTGCCCTTTCCCAACCAAGCAGCCAGTcgatccacgcttcaagattacTTTTTGAAGATGACAAAAGATTTCTTTAAAATACAACAGTCTTGATCGTGCTCTGGTAATTAAGGGGAGATCTCTTTTATAGAATTCAACTGTCTCGATCTCCTCTGTTAATCATGGGGAGATCTCTTTAGAATGCATTCTTGATCTTCGGGTAATCAAGTGGATCTTGTGACATTATGAGATGGACTGAAAAGCAGTACATAGGAACGCGACTGAAAATTGGCACTTCGCTCAGAGGTTGTATCTAGTTCTGCCATCAAGACGTGAATGAACAATTGTTACAGGTTGACAAAAATCACGTCGGCCTATTATAAGAAGAATCTGGCATTGAGGACATATGTAGAGTTTGATCTTTCTATTGATTGTATGTTGCCAATACATATATGACTGTGTGTGCCCCTTAACCCAGAAGGATCCACTTGCCTGCAGATACTAAAACACCCCAGATCCCATTATGCGTTATTAGACTGTGAGCATAGCGTCTAAACGCCAGGCCACCTCCAGACTTTGCTCTGAACTAAAGGTGAACTTCAGCCTCCTGATAACTTGTACATTTCCTTTGAACACGACAGACTTCTTTGGGGAGGGGGGCACAAGAAGCCAAGCCACATAGAACACGTTGGTGGTTGAGAGAACAATAAGTGCtagccttcttttttttttttcattgtggACATGATTGGGTCTAAtcctaactttttttttttacagttttttttgtgaGTCACATGAGAGACTTGGGAAGGGCTGATCTGATATGACGATTCTGGAGTTTGATGTCTTAATGATATGTGGTGTTCCTGGTAGCTCCTGAAAGTTTTTATGtaaagaaataataataatctgtaaCCTCCTGAATCATTTGGCAGTTCTTCAATGTGATTAAACATGCACATCTTTTCAATGGTGTGGCTGTTACTATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1666998 lncRNA upstream 15715 48087605 ~ 48087822 (+) True G1457093
TU1666995 lncRNA upstream 26855 48076366 ~ 48076682 (+) True G1457091
TU1666953 lncRNA upstream 126398 47976934 ~ 47977139 (+) True G1457051
TU1666814 lncRNA upstream 375502 47727795 ~ 47728035 (+) True G1456920
TU1666775 lncRNA upstream 388790 47713943 ~ 47714747 (+) True G1456883
TU1667050 lncRNA downstream 52797 48200041 ~ 48200356 (+) True G1457137
TU1667066 lncRNA downstream 118720 48265964 ~ 48266185 (+) True G1457153
TU1667067 lncRNA downstream 119302 48266546 ~ 48266927 (+) True G1457154
TU1667068 lncRNA downstream 120176 48267420 ~ 48267733 (+) True G1457155
TU1667069 lncRNA downstream 120632 48267876 ~ 48268092 (+) True G1457156
XM_021568651.2 mRNA upstream 66952 48030892 ~ 48036585 (+) False glrx
XM_036949995.1 mRNA upstream 76875 48001270 ~ 48026662 (+) False LOC110493997
XM_036949994.1 mRNA upstream 76875 48001274 ~ 48026662 (+) True LOC110493997
XM_021568648.2 mRNA upstream 117933 47980981 ~ 47985604 (+) False LOC110493996
XM_036949993.1 mRNA upstream 117933 47980981 ~ 47985604 (+) True LOC110493996
XM_036949997.1 mRNA downstream 5738 48152982 ~ 48174562 (+) False dcaf12
XM_021568664.2 mRNA downstream 5738 48152982 ~ 48179263 (+) False dcaf12
XM_021568663.2 mRNA downstream 5739 48152983 ~ 48179263 (+) True dcaf12
XM_036949998.1 mRNA downstream 47748 48194992 ~ 48235191 (+) False ubap2a
XM_036949999.1 mRNA downstream 47748 48194992 ~ 48235191 (+) True ubap2a
TU1666965 other upstream 66954 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 264167 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 296056 47805358 ~ 47807481 (+) True LOC100135862
TU1666430 other upstream 874741 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 2245036 45856249 ~ 45858501 (+) True G1454824
TU1667106 other downstream 241838 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 546077 48693321 ~ 48721244 (+) False bsnb
TU1668190 other downstream 775563 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 781103 48928347 ~ 48938022 (+) False erc2
TU1668186 other downstream 781103 48928347 ~ 48938022 (+) False erc2

Expression Profile