RNA id: XM_021568664.2


Basic Information

Item Value
RNA id XM_021568664.2
length 4758
RNA type mRNA
GC content 0.48
exon number 9
gene id dcaf12
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48152982 ~ 48179263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCGACGTTTTTGTTGCTGTTGAATTGTACTGCAGTTGCGCGCGGCACAATATTGTTACCGTTGGTGACGCTATttgtaaagaaagaaagaaggatggAGAAAATataaaaagagagatggaggagagcctTGCATTTAGCCTCCACTTAAGCAAATTTTATTCGGTTAAAAGCTAACCTACGCGCGTAGCTATAGTTTTAGTTTTGGAACCCGGAGGGtagactaacgttagctagtcaaCATCACCCTATGTGATCTTCCTTCCCCGCCGCATGCTGCTACAGTCAGAGCCAGACAACAAAATAGCTAATCGCCATTATATGACCCAGTACCTAGCGTCAGTATTGCCCTCCATGTGGGTGAGAGGCTTGTGTGTGTCAGATTATGGCGAGAAAAACAGTTAACAGGAAAAGGAAGGCAGGGGAGTCCAAGGACCAACAACAGgtgGGCTGGTGCCAGTCTGCATACAAGCGGGCACGCGTGTCTTCCTCGTCCCggcatgcccagcagtggtggcGTAGTCTGCGCTCGGTGGTGTACGCACTCCAGGGCCGTGAGATCCGGCCTCAGCAGCAGCATGAGTGGCGTCTCCAGCGTAGCTTGCGGGGCTTTGCTGCCGGCCGCCTCCCGGGCATCCTGAAGGAGCGGGAGTTCTCCCTGGGCCGCCTCAACAAGGTGTTCGCCTCGCAGTGGCTCAATCACCGCCAGGTGGTGTGTGGAACCAAGTGCAATACGCTATTTGTGGCAGATGTTCTGACAGGGAAGATTACACGCATCCCCATGCTGAAGGACCGGCAGGGCCAAGGAGGTGGCTCCGGGGGTGTTGGGGGGACAATAGGGGCCCCCTTCCTCGGAAGTGGCTCAGTGTCCGGGCTGGATCAGCAAGGCTGTGGGATCCACGCCATCGAGCTTAACCCCTCAGGCACTCTACTGGCCACGGGCGGAGACAACCCCAACAGCCTGGCTGTCTACCGTCTGCCCACCCTGGACCCCGTCTGCGTGGGAGATGATGGCCATAATGACTGGATCTTCTCCATTGCATGGATCAGCGACAGCATGGCGGTGTCTGGGTCCCGGGACGGTTCCATGGGACTGTGGGAGGTGTCCGAGGGGGTGCTGAGCCAGGCTATGAGACAGCAGGATGAGGAGGGGGTCCCTTGCTACTCTCATATCTCCCACCGTGCCCTGGAGGACATCCCCAAGGAATACACTAACCCGTACAACTGCAAAGTGAGGGCCCTGGCCTTCAACAACAACCACAAGGAGCTTGGGGCAGTGTCCCTGGATGGCTATTTTCACCTTTGGAAGGCAGAGCAAAACTTGAGCAAGCTGCTGTCAACGAAGCTGCCTCACTGCAAAGAGAATGTGTGTCTGGCGTATGGTCAGGACTGGTCGGTGTACGCAGTGGGCTCTCAGGCCCATGTGTCCTTCCTGGACCCCCGCCAGCCCACTCACAACATCAAATCAGTCAGTTCCCGGGAGAGAGGAAGCGGCATCCGCTCTGTGAGTTTCTATGAGCACATAGTGACAGTGGGCACGGGACAGGGCTCCCTGCTGTTCTATGATATTAGAGCCCAGAGGTTTTTGGAGGACCCTTCCAGCCCGGCCGGCGGGTTCCGGCAGCGCCCAGGAGAGGGCATTCTTAAACTCACCACAGGGAAGGGCTGGCTGaaTCACGACGAGACGTGGAGGAGCTACTTCTCGGACATTAACTCGTTCCCCAACGCTGTGTACACACACTGCTACGACGATTCTGGCACCAAGCTGTTTGTGGCCGGCGGACCGCTGTGCTCGGGCCTTCACGGCAACTACGCAGGACTCTGGAGCTAGCCTTCTCTCGTGTCTCGCCATCTCTCCTTACCCCACCCCAGTCCCCCTCTTTGCTCCTCCTTTCGGTGTTACACTCACTGTCATCCCTTCagtgttgtccctccctcccctcaccaACATGTATCTCATCACCATCTCTTTGTtgcatccctccatcctcccttgCACTTTGTCCTGTCTTCTTTCAGTTCCCTAGTCTCTGCTCCccttttgttttatatatatatattgatgattAACCAGTGATGTTGTAGCGAGCTGGGAGGTCTGCCTCTGAGAAACTCAAATGAAAGTGTAACGTTTTATTACAATTTTCAACCGTCACATACACTCCATGGATTggacttttttttctttttttttccctAAGGAAAGTTGTTTCCTTTGCTTGACAGTTTCCTTGCGTGGACATTCGGGAGacttttccccttctctctctccataaaaAAAATTGTGTGATAAAAGAGTTATAAGTTCTTAAGGATGGAACAAACAGGAGAATACTTACACTTTTctaagaaacttagagaggacaTGCTCATTGGCTGGTACGGGGCCACCCTGTGCCATGGCAACTAAAGAGCCGTAGCGATGGAAAAACTATCCAATCAGACGTAAGGTGAGAAGAAGCAGTGGATGAGTACAACCAATCATATAGCGCCGGCCACTTCTTTTTTTGACTGATGTGAAGGAGGGATGACTGTAGATTCTAAATGCCACATGGGTGTTCTGCTCTGAATAATCATGGAGACTGCTTATTTTATTTAGATTCTGACTGATTTGAAAAACTTAGTTGTTGTTATTGCTATTAGCTTTATtatttattcccccccccccctctcacaatCACCCTTAGCTATGGTCTTAGGCAGGGGTATTCAACACCAGTCCCGTGCGGAACGCAGTGTCTTCTGGTTCTTCCCCCAGTTAGGGGTCTGGTCATGGCAGTGGTTGTCCAGGGATTCCCTTTGACTTTTGATAGGCCACGTGGAGTTGTTGGCCTTTTTCTGAGACATTCCCAATAGTAACGggtctgggcccggtttccccaATGTATCTTAAGGCTTGGTTCGTTGTTTGAACCTACGTAGGAGCATCTTTAAATGTCCGacctgtttcccaaaaccatcgttACTGAAGTTGCACAAGAAAAGGGTAGTTATTTAACGACCACTCATAGAACAGAAAAGTGcgtctttttaaatgttttttttgcccTTCCGCGTCACTTCTTTATACACAGATCTCCGCTCAACACAAAATCAAGATGTTTATCTGTCTttctgttaccactgataactTCAAAACGAAtgtgactacaaatacaaagctgccaatgtctttgcaattgttACCAACAAGTGAAGAATATAAGATTCTTCAAACGAAAACCGAGATGTCTGAATTAAATGATAAATACATTAGGCTATATAGGCCTATATATTGAAGTACATTTCTTATCAATTGAGTTTAGCTATTTATATGCTACTTTACATCTTTTGCCTCAATAGATTTAATGTGTAGTCTACATTAGCGCAATGATTTCTAAGTATTTTATTTTTGGTacctttacccctttttctcccccaatttcatgatatccaattggtagttagtcttgcaccatcgctgcaactcccactACGGACTCGTGAGAGActaaggtcgagagccatgcgtcctccgaaacgcgaccctgccaagccgcactgcttcttgacacactgctcgcttaacccggaagccaaccgcaccaatatgtcggaggaaacaccgttcagcTGACGACCGAAGTCGGCTTGCAGGCGCctagcccaccacaaggagtcgatagagtgcgatgggacaaggaaatcccgtccggcctaaccctaccctaccccggacgatactgggccaattgtgcgccacctcatgggtctcccggtcacggccggctgtgacacagcctgggatcaaacccgggtctgtagtgttgccgcaagcactgcgatgcagtgctttagaccactgcaccacttgggaggcccatGATTTCAAATCTTAATTTAGTGCATTATagggtaagcattagaataagcctCCTCAATGTTTGTAGCCATAGGTGATCTCTAATAGGAGCTCATCCAttgtcagtattgtggaataatttgAATGGTATGATTTGAAAGGGAGAACGCTGATCCGAGAACAGCGCTGTCTTTATTTAGATCATATCCGTATCAACACATGCCTCAACGACGCACTTGGCGAATGTTCTCTGCTTGGTGTTTTGGGAAACTCATGTTACATCTTTGGCTGTTTTGTAGGAAAGCTGCATCGTTAAAACATGTTCCATTGGCCCTGGACAAGTGCTTAGGGATTAGGGGTTAGAGTTGATTACCTCTAGAGGCACCATCGTTTTTGTCAGTTGTTTCTATACTTTGTTTTTGTATGTATCAAGGGATGAGTGTAGCTTCTCTTTCCCTTGTGTGAAGGACAGGGTAGATTTGAGTTAATTTGTTGCCTTTCTCTAGTCTTTCTGTGAAAGACTGTTGCATGCTGACATtatttagcttttttacatggaacTTTTCTTAAGTGTTCATGATCATGCGAGAACAAAAACGAGACCCCAATTACGACTATAAGTTGAACAAATAAATAACCATCACTTTTAAAGAGTGTTTGagatataaatgtgtgtgtgaaatgCATAGGTCAAATGCATACATTTTTATGTATATGTTTGAGGTGTGTGGACTGACCTTTGCCTTTACTTTGGTGGTGACCTATTTTATACACACCTCatgaatgtttttttgttttttttttacaaatgactAAACCTGAGGATATTGTATGATATCAACAGCCAAAACACCATATTAAATCTTCAAAGAAAATAATGATACAAATAAAGTATATTGATGTAATATTTATCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1666998 lncRNA upstream 65160 48087605 ~ 48087822 (+) True G1457093
TU1666995 lncRNA upstream 76300 48076366 ~ 48076682 (+) True G1457091
TU1666953 lncRNA upstream 175843 47976934 ~ 47977139 (+) True G1457051
TU1666814 lncRNA upstream 424947 47727795 ~ 47728035 (+) True G1456920
TU1666775 lncRNA upstream 438235 47713943 ~ 47714747 (+) True G1456883
TU1667050 lncRNA downstream 20778 48200041 ~ 48200356 (+) True G1457137
TU1667066 lncRNA downstream 86701 48265964 ~ 48266185 (+) True G1457153
TU1667067 lncRNA downstream 87283 48266546 ~ 48266927 (+) True G1457154
TU1667068 lncRNA downstream 88157 48267420 ~ 48267733 (+) True G1457155
TU1667069 lncRNA downstream 88613 48267876 ~ 48268092 (+) True G1457156
XM_036949996.1 mRNA upstream 5738 48103537 ~ 48147244 (+) False ubap1
XM_021568661.2 mRNA upstream 5738 48107572 ~ 48147244 (+) False ubap1
XM_021568662.2 mRNA upstream 15856 48107575 ~ 48137126 (+) True ubap1
XM_021568651.2 mRNA upstream 116397 48030892 ~ 48036585 (+) False glrx
XM_036949995.1 mRNA upstream 126320 48001270 ~ 48026662 (+) False LOC110493997
XM_036949998.1 mRNA downstream 15729 48194992 ~ 48235191 (+) False ubap2a
XM_036949999.1 mRNA downstream 15729 48194992 ~ 48235191 (+) True ubap2a
XM_036950004.1 mRNA downstream 128562 48307825 ~ 48328975 (+) False LOC110494009
XM_021568668.2 mRNA downstream 128562 48307825 ~ 48329446 (+) True LOC110494009
XM_021568673.2 mRNA downstream 169702 48348965 ~ 48354058 (+) False tpgs2
TU1666965 other upstream 116399 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 313612 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 345501 47805358 ~ 47807481 (+) True LOC100135862
TU1666430 other upstream 924186 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 2294481 45856249 ~ 45858501 (+) True G1454824
TU1667106 other downstream 209819 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 514058 48693321 ~ 48721244 (+) False bsnb
TU1668190 other downstream 743544 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 749084 48928347 ~ 48938022 (+) False erc2
TU1668186 other downstream 749084 48928347 ~ 48938022 (+) False erc2

Expression Profile