RNA id: XM_036949999.1


Basic Information

Item Value
RNA id XM_036949999.1
length 4036
RNA type mRNA
GC content 0.60
exon number 27
gene id ubap2a
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48194992 ~ 48235191 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAGGAGGAAACACGCGCGTCTGCGCAGTTGTCTCTCACGACCACAGAGGAGAGCGACTACAGCAACGCCGTATATCACGTGACCTTGTGCTGGCTGAGTGAATCGTGTTAGCAGATTTTTCTATTTTGTACATACATtgttttgtatatactgtatatgatgaCATCGTTGGGCGGCGACAAAGCCCGGGGCACTCGGGACAAAGCGCTGCCTGCTGCCACACACGCAACTCAACCACAGAAACAGCTCCAGGCGACTGCAGAACAGATCCGACTCGCCCAGATGATCTATGACAAGAATGATGCTGAGTTTGAGGACAAAGTGAACCAGCTGATGGAGGTGACAGGAAAGATCCAGGATGAATGCATGGTAGCGCTCCACGACTGCAACGAGGATGTCAACAGAGCCATCAACTTCCTCCTTGAGAGCACCTCTGATACGacctCATGGGAGACAGTTGGGAAGAAGAAACCCCTAGCGAAGGACGGCCCGACGGAGGGCAAGGAGAAccgggagaagagaggaggagagcgagagggcaGCAGGGGCCGCGGAGGAAGCAATCGGAGAGGCAGGGGGGCCAGCAACCGCAGCCGCCAGGTTGAGAGAGTGCGGCCAGAGGAAAATGGTGTGGAGGCGGTCCCTGGCCCTTTGGACAGAGTGTCAGAGCGAGGTCGCAGGGGGGGAAGAGGGGGTAGAGTCGGATCTGGAGGCAGAGGAAGGGGCAGGGCACCAGCGGGTAGCAGGTTCTCAGCCCAGGGAATGGGgaccTTTAACCCAGCAGACTACACCCCAGAACAGGGGACAGGGACCACACAAGGTGACACTTGGGAGTCAGGGGCCAGCAACAGCACAGACGGGACAGTGGCCTGGAGGAGTACTCTGGAAGACTGGGCTGCTGAGGACTGGagcgaagagatgagtctCTCCGAGACCAAAGTGTTCACCGCCTCAAGTGCACCTGCACCTCAGAACCACCTCACACCTGGGCAAAGTCTGGACCTGCCCTCTCTGCTGCAGAAGCCAgtgggagaaggaagaggaggaggaggggatgccCCCTCTACACAGAGCCTGGTTTTCACCAACTCCCACCATCACCCCCCCCGCAACGGGTCGGCCATTGGCACAGGCAGCACCAGCTATGCACACGCCGCCCTGTCGTCAGTGCTAGGGGCAGGTTTCGGGGACCTGGGCCAGTCTAAGAGGAGTCAGTCCAGTCCGGGGGCCCAGATCTTGGAGCAGCTGAAGGGCCCGGGCCTgggtcctctcccatcctcccaggcAGCCCCCCCTCCCAGCACTCAGGGGGCCAGTAACACCTCTCTGGGGAGTAGACTCCCAGGGGTAGGAGGAGCCGCTCCTGTTCTCCCACCGCCTTCCACTTCAAGCTGGGATATCAAGATCCCAGAGCCCAGCGCCACATCCTCCTCACACACCTCCCACTTCAGCCGGGACTTTAAGCTGCAGCCTGAGCCATCCCTGGTGCTGAGCCAGCTGGCCCAGAAACACGGCGCCCCCTCTCTGCCCATTGCtcgccagcccagcccagcccaatctccctcccccatccagggACCCCCCCTGGCCACCATCGGTGCCAAGCCTGCCCACAGCGCCGGGCCGGACACTCAAGGCAGCAACTCGCTGCAGCAGCACCGCGTTCCACAGCTAAAGGCCCAGAAACGAAGGATACCTCCCACCTCTAAGATCCCCTCGTCGGCGGTGGAAATGCCTGGCACTGCCGACGTCCCCGGTCTTAACGTTCAGTTTGGAGCACTGGACTTTGGCTCGGAGGCAGCCCTGCCGGACTTTGGCCCCGTGGAGACGTGTGTCACCGGGGGCTCCAGGGAGTCCACCCCGGCCCCACAGAGCCAGACCAACCTCTATTCCAATCACCTCAGTGAATCTATGAGCACCCCTCTTTCcgtcaccctccctctctcatcctctgagCCTGTCTACCACTCCCCGTCGGTGCCCATGCCCAGCCTGACCACCTCCTCTATGGGTACAGTCAGCTCCTCcactccatcctcctccatctcctcctcggtgccctcctcctcttccacgtCTCCCTTTGTCTCAGTGGGGAGCGGTTATGACTGTGGGCCTGTGGCCCCTCACTCACACCTGGCCTTCTCCCAGAGCAAAGAGGCACCCGGGCCAATCATGAACGGTCTGAACGGTGTGAGGACGTCTGCTATGGACCctTCATCAGCCTCCTCTACGCCAAAGCCGGAGTCTCCCTCTCTGAGCATCAGTACCAGCAGTGCCCCTGCCCCCTCTGCCCTCATGCCCTCCTCCATACCCTCCCACAGCTCGGCACTCCCCAGTCTGCCACACGACATGCCCTCTGCCAGCCTGGCACCACTCAGCAGCCATGGCAGCAGTAGTCATTCCTCTCTCACTtataccagtgtagacagtagtgtgagCTCTCTGGCACCCTCGTCTGGCTCCTACTCCTCTGCCCAGGCCCCAGCCCAGTCACTCCACCAGGTCAACAGCGGCATGGCTCACATCATGGGCACCATGAGCCACATGAACAGCATGGTCAGTAGCATGGGTGGCAGCGGGCATCACGCCAGCCAAGCACTGGGGCTCAGTGCCAACGGGACCACGGCCCAAGCGAACCTCTCCTCGGCCCCCAGGACCGCACCGCTGCTCTCCTCCTCAACTgGTAAAGCTCCTCCTAACCTGTCTCAGGGGGTTCCCCCACTACTGCCCAACCAGTACATCATGGGCCCAGGAGGCCTGCTGCCTGCCTACCCGCAGATCTACGGCTATGAGGACCTCCACATGCTACAGTCCAGACTGCCTATGCCCTCTTTGCAGGATTACTACGGAATCACATTCCCTGGTCCTGCAGCACTCTCTGGCAGAGATGGGAGCCTCACCAATAACCCCTACTCAGGTGAAGTCACAAAGTTTGGCAGGGGTGACTCCACCTCCCCTGCGCCTAGCAGCTTGTCGGCCCAACAGCAGCCCCAACAGGGCCAGAGCCAAGGGCAGAACCAGGCCCAGCCACAAcccccccagccccagcctcaagGCCAACCCCAGGGCCACCACAACAGCCAGCAGCAGCAGGCCTTCCTCCCGCCAGGCTACAGCTACACAGGCCTGCCCTACTACCCCGGGATGCCTGGCGCTGCCTTCCAGTACGGCCACACCATGTTCATGCCCCAGGGACAGGGGCCAGCCAAGCAGCACGGTGTGGGTTTGGGAAACCCCTCAGCCAGCCCCTTCCAGCAGCAGCAGCCCAGTGGCTACGGCCAGCACACCTTCAGCTCAGGGTATGAGGACCTGACCCAGGGCCAAGCAGGAGTAGACTATAGCAAGGGATATAGCAACTCCTCCCAGAGCCAGGCCAAATCTGCTACCACAGGCCCCGGTAAAGGCGGCATCTCTGTGACGTCAGGCAACTCCGGGGTCCCAGAAATCAGTGGAAGTGTTTACAACAAGACCCAGTCCTTTGATAAGCAGGGATTCCATGCGGGGACTCCCCCTCCTTTCAACCTGCCTTCGGCTATGGGGGGTCCTGGAGGGGCCCCGGGTGGCTACGCTCCCGCCCCCTTCCTCCACATCCTGCAGCCTGCCCACCAGCAACCCCACTCCCAGATGCTGCACCATCATCTGGCCCAGGACGGACAGGGAGGTCCTAGCCAGCGAGGCCAGTCTAGCAGCATGCAGCAGAAGAGCCAGGTCAACAAGTCCAGCTACGGCAGCTCCCCATACTGGGGCAActgacagggctgtgtgtgtacacactgcATCATGCCCTATCAgaccagagggggggggggacaaagtaTTTTACAACACCAGGctaaaacacacactaacacccccctccccactcatTATTCCCCTTTAAAAATGTATGGCTGttgtatgtaaaatatatttatgtatgtatttatacagtatatatgtattaGTAGGACATGAAATTTGGTTTAGATTTTTTTGAAGGATGATAGGAGTCAAATATCATGAAGTTGGTGAATATACAGTACTTGAACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1666998 lncRNA upstream 107170 48087605 ~ 48087822 (+) True G1457093
TU1666995 lncRNA upstream 118310 48076366 ~ 48076682 (+) True G1457091
TU1666953 lncRNA upstream 217853 47976934 ~ 47977139 (+) True G1457051
TU1666814 lncRNA upstream 466957 47727795 ~ 47728035 (+) True G1456920
TU1666775 lncRNA upstream 480245 47713943 ~ 47714747 (+) True G1456883
TU1667066 lncRNA downstream 30773 48265964 ~ 48266185 (+) True G1457153
TU1667067 lncRNA downstream 31355 48266546 ~ 48266927 (+) True G1457154
TU1667068 lncRNA downstream 32229 48267420 ~ 48267733 (+) True G1457155
TU1667069 lncRNA downstream 32685 48267876 ~ 48268092 (+) True G1457156
TU1667070 lncRNA downstream 33431 48268622 ~ 48268881 (+) True G1457157
XM_021568664.2 mRNA upstream 15729 48152982 ~ 48179263 (+) False dcaf12
XM_021568663.2 mRNA upstream 15729 48152983 ~ 48179263 (+) True dcaf12
XM_036949997.1 mRNA upstream 20430 48152982 ~ 48174562 (+) False dcaf12
XM_021568661.2 mRNA upstream 47748 48107572 ~ 48147244 (+) False ubap1
XM_036950004.1 mRNA downstream 72634 48307825 ~ 48328975 (+) False LOC110494009
XM_021568668.2 mRNA downstream 72634 48307825 ~ 48329446 (+) True LOC110494009
XM_021568673.2 mRNA downstream 113774 48348965 ~ 48354058 (+) False tpgs2
XM_021568671.2 mRNA downstream 113795 48348986 ~ 48354058 (+) False tpgs2
XM_021568672.2 mRNA downstream 113817 48349008 ~ 48354058 (+) True tpgs2
TU1666965 other upstream 158409 48030914 ~ 48036583 (+) True glrx
TU1666865 other upstream 355622 47833580 ~ 47839370 (+) True G1456969
TU1666845 other upstream 387511 47805358 ~ 47807481 (+) True LOC100135862
TU1666430 other upstream 966196 47228219 ~ 47228796 (+) True G1456570
TU1664577 other upstream 2336491 45856249 ~ 45858501 (+) True G1454824
TU1667106 other downstream 153891 48389082 ~ 48424405 (+) False LOC110494013
TU1668086 other downstream 458130 48693321 ~ 48721244 (+) False bsnb
TU1668190 other downstream 687616 48922807 ~ 48928262 (+) False erc2
TU1668185 other downstream 693156 48928347 ~ 48938022 (+) False erc2
TU1668186 other downstream 693156 48928347 ~ 48938022 (+) False erc2

Expression Profile